BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0042.2
(173 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC82070 weakly similar to PIR|G96589|G96589 T22H22.18 [imported]... 150 3e-37
AL384305 60 4e-10
TC88231 similar to GP|21553612|gb|AAM62705.1 unknown {Arabidopsi... 30 0.64
TC77925 similar to GP|18700163|gb|AAL77693.1 AT4g02720/T10P11_1 ... 29 1.1
BQ751661 weakly similar to PIR|T39572|T39 probable proteinase su... 28 1.4
BG648985 weakly similar to PIR|T07780|T07 remorin - potato, part... 28 2.4
BQ137325 27 3.2
TC81174 27 3.2
TC79466 similar to PIR|T00839|T00839 hypothetical protein At2g17... 27 4.1
AW691018 weakly similar to GP|2462935|em open reading frame 1 {B... 27 5.4
TC85412 homologue to GP|15450763|gb|AAK96653.1 elongation factor... 27 5.4
TC87326 similar to SP|Q02166|TRPD_ARATH Anthranilate phosphoribo... 27 5.4
AW697223 similar to GP|9757890|dbj phosphoribosylanthranilate tr... 27 5.4
AJ500986 26 7.0
AW697233 similar to PIR|T46230|T462 NAC2-like protein - Arabidop... 26 7.0
TC89567 similar to GP|12328581|dbj|BAB21240. Putative protein ki... 26 7.0
BQ141699 similar to GP|334068|gb|A ORF2 {Pseudorabies virus}, pa... 26 9.2
TC83414 weakly similar to GP|17381206|gb|AAL36415.1 unknown prot... 26 9.2
AW692379 26 9.2
TC89557 weakly similar to GP|10178211|dbj|BAB11635. TMV resistan... 26 9.2
>TC82070 weakly similar to PIR|G96589|G96589 T22H22.18 [imported] -
Arabidopsis thaliana, partial (27%)
Length = 571
Score = 150 bits (378), Expect = 3e-37
Identities = 71/102 (69%), Positives = 83/102 (80%)
Frame = +3
Query: 35 DGSHSTSQAESSTITLWKHNSELVHALFVPPNEPTKLNKLLREQVKDTTGRIWFDMPAQT 94
D SH+TSQ ++ + T+WK NSELV+ LFVPPN+P KLNKLL++QVKDT G+ WFDMPA T
Sbjct: 171 DPSHTTSQTKTPSSTIWKPNSELVNGLFVPPNDPRKLNKLLKQQVKDTAGKQWFDMPAPT 350
Query: 95 INPELQKDETSLQLRAAIDPKRHYKKGNSKSKALPKYFQASS 136
I PEL+KD LQLR AIDPKRHYKK SKSKALPKYFQ +
Sbjct: 351 ITPELKKDLKLLQLRDAIDPKRHYKKSGSKSKALPKYFQVGT 476
>AL384305
Length = 455
Score = 60.1 bits (144), Expect = 4e-10
Identities = 26/35 (74%), Positives = 31/35 (88%)
Frame = +3
Query: 139 RKVREIEEQNQPAGNEKWKVKGGNSRKRAKERRNY 173
RKVREIEE +PAGNEKWK++G ++RKRAKERR Y
Sbjct: 30 RKVREIEEHRRPAGNEKWKIQGKSTRKRAKERRKY 134
>TC88231 similar to GP|21553612|gb|AAM62705.1 unknown {Arabidopsis
thaliana}, partial (11%)
Length = 765
Score = 29.6 bits (65), Expect = 0.64
Identities = 15/45 (33%), Positives = 23/45 (50%)
Frame = +2
Query: 104 TSLQLRAAIDPKRHYKKGNSKSKALPKYFQASSGARKVREIEEQN 148
T + + A P+R YKKG S S KY + S R + ++ +N
Sbjct: 272 TGVFIPQATQPRRRYKKGRSNS--FSKYQKQSQDTRMISQVPNKN 400
>TC77925 similar to GP|18700163|gb|AAL77693.1 AT4g02720/T10P11_1
{Arabidopsis thaliana}, partial (47%)
Length = 1538
Score = 28.9 bits (63), Expect = 1.1
Identities = 20/73 (27%), Positives = 33/73 (44%), Gaps = 5/73 (6%)
Frame = +3
Query: 104 TSLQLRAAIDPK----RHYKKGNSKSKALPKYF-QASSGARKVREIEEQNQPAGNEKWKV 158
T R +I P+ RH+ GNS LPK F ++G+ R +N+ +E+ K
Sbjct: 177 TDRHRRRSISPENRNPRHHDNGNSNGNHLPKKFGHRNNGSYLDRNDSRRNESESDEELKG 356
Query: 159 KGGNSRKRAKERR 171
+R K ++
Sbjct: 357 LSYEEYRRLKRQK 395
>BQ751661 weakly similar to PIR|T39572|T39 probable proteinase subunit -
fission yeast (Schizosaccharomyces pombe), partial (22%)
Length = 708
Score = 28.5 bits (62), Expect = 1.4
Identities = 19/71 (26%), Positives = 32/71 (44%), Gaps = 3/71 (4%)
Frame = +3
Query: 2 RKQRTERIRLRSENPTKLRWSQRRH---FCAVLCRDDGSHSTSQAESSTITLWKHNSELV 58
R++RT RL S ++ + RR+ F S + SS++T W+ S ++
Sbjct: 126 RRRRTRPPRLVSSRRGRMPRTSRRNLSPFAKSTFPKSSEASRFTSPSSSLTSWRSASRML 305
Query: 59 HALFVPPNEPT 69
L P +PT
Sbjct: 306 PTLATTPRQPT 338
>BG648985 weakly similar to PIR|T07780|T07 remorin - potato, partial (58%)
Length = 793
Score = 27.7 bits (60), Expect = 2.4
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 122 NSKSKALPKYFQASSGARKVREIEEQNQPAGNEKWKVKGGNSRKRAKERRN 172
NSK AL + RK+ E E+ + EK K KGG K+A+E+++
Sbjct: 623 NSKKAAL------EAQLRKIEEQLEKKKAEYGEKIKNKGGMVHKQAEEKKS 757
>BQ137325
Length = 884
Score = 27.3 bits (59), Expect = 3.2
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +2
Query: 69 TKLNKLLREQVKDTTGRIWFDMPA----QTINPELQKDETSLQLR 109
T LN EQVK+ +W +PA TI PE Q LQLR
Sbjct: 26 TSLNFAGNEQVKEYERIVWSPLPAISARSTILPEDQPHFLRLQLR 160
>TC81174
Length = 1058
Score = 27.3 bits (59), Expect = 3.2
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +1
Query: 16 PTKLRWSQRRHFCAVLCRDDGSHSTSQAESSTITLWKHNSELVHALFVPPNEPTKLNKLL 75
P + R V+C G S + ++ + K + +++HAL + N KLN++L
Sbjct: 67 PLNSTTNNRSKATTVVC---GLRSCKNKKPPSMVISKESVQVIHALKLAKNSEEKLNQVL 237
Query: 76 REQV 79
+ ++
Sbjct: 238 KSKL 249
>TC79466 similar to PIR|T00839|T00839 hypothetical protein At2g17850
[imported] - Arabidopsis thaliana, partial (56%)
Length = 652
Score = 26.9 bits (58), Expect = 4.1
Identities = 20/67 (29%), Positives = 28/67 (40%)
Frame = -1
Query: 41 SQAESSTITLWKHNSELVHALFVPPNEPTKLNKLLREQVKDTTGRIWFDMPAQTINPELQ 100
S++ S ++ NS L H+ PP T LN R T P + LQ
Sbjct: 460 SKSSYSVTCIFTGNSFLTHSR*PPPMLYTSLNPSARRSAVAYTDLTPLWQPTMR*SSLLQ 281
Query: 101 KDETSLQ 107
+DETS +
Sbjct: 280 RDETSFR 260
>AW691018 weakly similar to GP|2462935|em open reading frame 1 {Brassica
oleracea}, partial (12%)
Length = 639
Score = 26.6 bits (57), Expect = 5.4
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +2
Query: 35 DGSHSTSQAESSTITLWKHNSELVHALFVPPNEPTKLNKLLREQVKDTTGRIWFDM 90
DG+ A+ + LWK ++LV + EP ++ DT +W D+
Sbjct: 287 DGTVKAPSADDPKLPLWKRCNDLVLTWILHSIEPDIARSVI---FSDTAAAVWSDL 445
>TC85412 homologue to GP|15450763|gb|AAK96653.1 elongation factor EF-2
{Arabidopsis thaliana}, complete
Length = 3229
Score = 26.6 bits (57), Expect = 5.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 21 WSQRRHFCAVLCRDDGSHSTSQAESSTITLWKH 53
WS R+H +L G + +A ST+++W H
Sbjct: 670 WSSRKHLSILLTVRTGLILSPRACRSTVSVWTH 572
>TC87326 similar to SP|Q02166|TRPD_ARATH Anthranilate
phosphoribosyltransferase chloroplast precursor (EC
2.4.2.18). [Mouse-ear cress], partial (56%)
Length = 1047
Score = 26.6 bits (57), Expect = 5.4
Identities = 15/41 (36%), Positives = 19/41 (45%), Gaps = 3/41 (7%)
Frame = -3
Query: 48 ITLWKH---NSELVHALFVPPNEPTKLNKLLREQVKDTTGR 85
+ LW H NS+ +HALF P N V +TGR
Sbjct: 706 VILW*HHKSNSDFIHALFNPLRTQVNNNSQFF*HVSTSTGR 584
>AW697223 similar to GP|9757890|dbj phosphoribosylanthranilate
transferase-like protein {Arabidopsis thaliana}, partial
(5%)
Length = 778
Score = 26.6 bits (57), Expect = 5.4
Identities = 19/55 (34%), Positives = 25/55 (44%)
Frame = -1
Query: 15 NPTKLRWSQRRHFCAVLCRDDGSHSTSQAESSTITLWKHNSELVHALFVPPNEPT 69
+PT LR R + C RD S STS +ST T + N V ++PT
Sbjct: 697 SPTALREHSRTYSC----RDVSSASTSVFSASTTTQMRSNLRTVVHEIASVSDPT 545
>AJ500986
Length = 349
Score = 26.2 bits (56), Expect = 7.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 153 NEKWKVKGGNSRKRAKER 170
+EKW VK GN + KER
Sbjct: 55 SEKWFVKSGNGEREEKER 2
>AW697233 similar to PIR|T46230|T462 NAC2-like protein - Arabidopsis
thaliana, partial (4%)
Length = 851
Score = 26.2 bits (56), Expect = 7.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 12 RSENPTKLRWSQRRHFCAVLCRDDGSHSTS 41
R+ NPT +S+R C DG HST+
Sbjct: 138 RNRNPTGSLFSERTCHAPPACCGDGKHSTT 49
>TC89567 similar to GP|12328581|dbj|BAB21240. Putative protein kinase {Oryza
sativa (japonica cultivar-group)}, partial (21%)
Length = 1003
Score = 26.2 bits (56), Expect = 7.0
Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = +1
Query: 36 GSHSTSQAESS--TITLWKHNS 55
GSHS S ESS T+T++KH+S
Sbjct: 769 GSHSQSGEESSSGTVTVYKHSS 834
>BQ141699 similar to GP|334068|gb|A ORF2 {Pseudorabies virus}, partial (1%)
Length = 1217
Score = 25.8 bits (55), Expect = 9.2
Identities = 13/39 (33%), Positives = 20/39 (50%)
Frame = -2
Query: 133 QASSGARKVREIEEQNQPAGNEKWKVKGGNSRKRAKERR 171
Q +G +K R + QPA +++ +GG KR RR
Sbjct: 136 QRKTGHKKKRATGKPRQPARDDRQGRRGGRREKRKGGRR 20
>TC83414 weakly similar to GP|17381206|gb|AAL36415.1 unknown protein
{Arabidopsis thaliana}, partial (28%)
Length = 1088
Score = 25.8 bits (55), Expect = 9.2
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +2
Query: 35 DGSHSTSQAESSTITLWKHNSE 56
DG H S +E S + +W H +
Sbjct: 851 DGKHIVSLSEGSNVCIWNHTGQ 916
>AW692379
Length = 383
Score = 25.8 bits (55), Expect = 9.2
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -3
Query: 97 PELQKDETSLQLRAAIDPKRHYKKGNSKSKALPKYFQASSGARKVREIEE 146
P+L E +LQ+ I PK HY+ ++ + + S R + ++E
Sbjct: 213 PDLSL*ERNLQVN*KILPKIHYRGITKRNDIIEVFIDLLSNERLITSVDE 64
>TC89557 weakly similar to GP|10178211|dbj|BAB11635. TMV resistance protein
N {Arabidopsis thaliana}, partial (8%)
Length = 1567
Score = 25.8 bits (55), Expect = 9.2
Identities = 23/89 (25%), Positives = 37/89 (40%)
Frame = -3
Query: 8 RIRLRSENPTKLRWSQRRHFCAVLCRDDGSHSTSQAESSTITLWKHNSELVHALFVPPNE 67
RI R+ + T L W Q +H H T Q L +L+H V N
Sbjct: 242 RICRRTRSCTSLSW-QTKHLI---------HRTKQ-------LIHRTKQLIHCPLV*YNF 114
Query: 68 PTKLNKLLREQVKDTTGRIWFDMPAQTIN 96
P L++ + + D+ G I F+M + ++
Sbjct: 113 P*SLSQEIASKCNDSNGVILFEMKKRQVD 27
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.313 0.128 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,729,450
Number of Sequences: 36976
Number of extensions: 78631
Number of successful extensions: 363
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of query: 173
length of database: 9,014,727
effective HSP length: 89
effective length of query: 84
effective length of database: 5,723,863
effective search space: 480804492
effective search space used: 480804492
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0042.2