BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0042.15
(352 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC79214 similar to GP|15706274|emb|CAC69997. HMG I/Y like protei... 211 4e-55
TC79213 similar to GP|15706274|emb|CAC69997. HMG I/Y like protei... 140 6e-34
TC80856 similar to GP|15706274|emb|CAC69997. HMG I/Y like protei... 128 4e-30
AW587067 similar to PIR|T09584|T09 high mobility group protein H... 103 1e-22
TC77788 similar to PIR|S57948|S57948 HMGI/Y protein - garden pea... 102 2e-22
TC78344 similar to GP|13540405|gb|AAK29456.1 histone H1 {Lens cu... 85 5e-17
TC85720 similar to SP|P08283|H1_PEA Histone H1. [Garden pea] {Pi... 80 9e-16
TC85721 similar to SP|P08283|H1_PEA Histone H1. [Garden pea] {Pi... 78 6e-15
TC85722 similar to SP|P08283|H1_PEA Histone H1. [Garden pea] {Pi... 75 4e-14
TC77010 similar to PIR|S59560|S59560 histone H1.41 - garden pea,... 74 8e-14
TC89413 weakly similar to GP|8778473|gb|AAF79481.1| F1L3.23 {Ara... 53 2e-07
BQ151174 similar to GP|11036868|gb| PxORF73 peptide {Plutella xy... 50 1e-06
TC78495 homologue to PIR|S53504|S53504 extensin-like protein S3 ... 41 8e-04
BQ141681 weakly similar to GP|15145793|gb| basic proline-rich pr... 41 8e-04
TC88557 weakly similar to GP|17065320|gb|AAL32814.1 Unknown prot... 41 8e-04
TC86848 similar to GP|10177413|dbj|BAB10544. fibrillarin-like {A... 39 0.004
BQ144482 similar to GP|6523547|emb| hydroxyproline-rich glycopro... 38 0.007
TC91646 weakly similar to GP|6523547|emb|CAB62280.1 hydroxyproli... 37 0.009
BQ144502 weakly similar to GP|6523547|emb hydroxyproline-rich gl... 37 0.009
BQ141932 weakly similar to GP|6523547|emb hydroxyproline-rich gl... 37 0.015
>TC79214 similar to GP|15706274|emb|CAC69997. HMG I/Y like protein {Glycine
max}, partial (24%)
Length = 911
Score = 211 bits (536), Expect = 4e-55
Identities = 145/310 (46%), Positives = 163/310 (51%), Gaps = 60/310 (19%)
Frame = +3
Query: 8 PPPPPPTAVP-FTQEAINHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAI 66
PPPPPPT VP FT A HPPYAEMIY+AIEALKEKDGSSK AI
Sbjct: 57 PPPPPPTTVPSFTHHV----------------APHPPYAEMIYKAIEALKEKDGSSKRAI 188
Query: 67 AKYIEEAYTD-LPPAHSTLLTHHLKRLKDTGLLIMLKKSYKLPSSLPSDITQNAAQPVR- 124
KYIE Y LPP HSTLLT HL LK GLLIM KKSYKLPSSLP T N +
Sbjct: 189 GKYIEHVYKQVLPPEHSTLLTQHLNHLKSAGLLIMFKKSYKLPSSLPPPPTLNRSDHSEA 368
Query: 125 -----------RGRPPRS----------------------------GIPKRRGRPP---- 141
RGRPP+ + + RGRPP
Sbjct: 369 HLPFTPLTQRGRGRPPKHKPILIPNAQPVFVSLDPPPPTTAVEPVLSVKRGRGRPPGTFR 548
Query: 142 -----KPKSLSNGLKR---RPPKHQLQ-ATVIPFA---DPSLA--QPPVPVGSPRPRGRP 187
KPKS+SNGLKR RPPK Q TVIPFA PS+ + V V S RPRGRP
Sbjct: 549 SKSIKKPKSVSNGLKRRPGRPPKTQSHPTTVIPFAAAPAPSVVSDEANVSVRSTRPRGRP 728
Query: 188 RKNAAALPPPHAVGGVDSSLMVPGRPQKLAVRGRPKNPAGRPVGRPKGTTSANIAQRIAN 247
+K + + P + GRP+KLAV GRPKNP+GRP+GRPKG ++ N
Sbjct: 729 KKYSDTVVP-------GAGATRRGRPKKLAVVGRPKNPSGRPIGRPKGAK----GKKFVN 875
Query: 248 ENLRRKLEYF 257
E+LRRKL F
Sbjct: 876 EDLRRKLNTF 905
>TC79213 similar to GP|15706274|emb|CAC69997. HMG I/Y like protein {Glycine
max}, partial (16%)
Length = 811
Score = 140 bits (354), Expect = 6e-34
Identities = 86/178 (48%), Positives = 104/178 (58%), Gaps = 36/178 (20%)
Frame = +1
Query: 211 GRPQKLAVRGRPKNPAGRPVGRPKGTTSANIAQRIANENLRRKLEYFQSKVKESLDVLKP 270
GRP+KL V PK P+GRP+GRPKG ++ NE+LRRKLE+FQSKVKESLD+LKP
Sbjct: 22 GRPKKLPVVAGPKIPSGRPIGRPKGAKG----KKFVNEDLRRKLEHFQSKVKESLDILKP 189
Query: 271 YFDHASPVPAIAAIQELEIVATSDLKAPLRD--VPSQKIPEQLPLQEHL---------LP 319
FDH SP A+AAIQELE++AT DLKAPLRD + Q+ PE PLQ+ L +P
Sbjct: 190 LFDHQSPATAVAAIQELEMLATLDLKAPLRDETLQPQQFPEPQPLQQELPSQQLHPQPVP 369
Query: 320 QPLPEPQI-----------------------TYQQQHLQTQLHQLFQ--FQPHASFPS 352
Q LP Q+ Y+QQ+ Q L Q Q FQPH PS
Sbjct: 370 QALPSQQLHPQPVPQAPPSQQLHPQQVSQAQNYEQQYRQMPLQQQVQQLFQPHNLAPS 543
>TC80856 similar to GP|15706274|emb|CAC69997. HMG I/Y like protein {Glycine
max}, partial (35%)
Length = 1552
Score = 128 bits (321), Expect = 4e-30
Identities = 113/265 (42%), Positives = 135/265 (50%), Gaps = 57/265 (21%)
Frame = +2
Query: 125 RGRPPRSGIPKRR--GRPPK--PKSLSNGL---------KRRP---PKHQLQ-ATVIPFA 167
RGRPP S +R GRPPK P++L +G KRRP PK+Q Q TVIPFA
Sbjct: 749 RGRPPGSKAKSKRRPGRPPKIQPETLVSGATVGVVLGGSKRRPGRPPKNQQQNPTVIPFA 928
Query: 168 DP------SLAQPPVPVGSPRPRGRPRKN--AAALPPPHAV-------------GGVDSS 206
P V V +PR R RPRKN A A P AV GGV
Sbjct: 929 APVQEGTVQAGVEGVAVLTPRSRRRPRKNVNAVAAVPVAAVAATGRGRGRGRGRGGVAGR 1108
Query: 207 LMVPGRPQKLAVRGRPK------NPAGRPVGRPKGTTSANIAQRIAN----ENLRRKLEY 256
GR RGRP+ + RPVGRPK T+ A N ++L+RKLE+
Sbjct: 1109 GRGGGRG-----RGRPRLNLLAQSFGKRPVGRPKKRTTPATASAPENAAKEDDLKRKLEH 1273
Query: 257 FQSKVKESLDVLKPYFDHASPVPAIAAIQELEIVATSDLKAPLRD--VPSQK-IPEQLPL 313
FQ KVKESL L+P+F+H SPV AIAAIQELEI+ DL PL+D +P Q+ + Q
Sbjct: 1274 FQGKVKESLAALRPHFNHESPVTAIAAIQELEILVAMDLSEPLKDETLPQQQNLSAQDQP 1453
Query: 314 QEHLLPQP------LPEPQITYQQQ 332
Q+ LPQP LP PQI Q
Sbjct: 1454 QQQQLPQPPPPQQQLPPPQIVAHPQ 1528
Score = 125 bits (315), Expect = 2e-29
Identities = 74/134 (55%), Positives = 82/134 (60%), Gaps = 8/134 (5%)
Frame = +3
Query: 9 PPPPPTAVPFTQEAINHA---PDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTA 65
P PPP VPF E NH P +P SS NHPPYAEMIY AIEALKEKDGSSK A
Sbjct: 15 PAPPPNTVPFAVEPNNHPLPPPPQQLPAPSSF--NHPPYAEMIYTAIEALKEKDGSSKRA 188
Query: 66 IAKYIEEAYTDLPP---AHSTLLTHHLKRLKDTGLLIMLKKSYKLP--SSLPSDITQNAA 120
I+KYIE Y D P +H LLTHHLKRLK GLL M+K SY +P +SLP T +
Sbjct: 189 ISKYIEHVYRDQLPNSESHQNLLTHHLKRLKSEGLLQMIKNSYIIPRSTSLPPPPTTASP 368
Query: 121 QPVRRGRPPRSGIP 134
RGRP + P
Sbjct: 369 SSRPRGRPRKVQTP 410
>AW587067 similar to PIR|T09584|T09 high mobility group protein HMGI/Y-1 -
sword bean, partial (71%)
Length = 604
Score = 103 bits (257), Expect = 1e-22
Identities = 80/208 (38%), Positives = 101/208 (48%), Gaps = 4/208 (1%)
Frame = +3
Query: 38 PANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGL 97
P + P Y EMI +AIE L E++GS+K++I+KYIE Y LP H LL HL R++D+G
Sbjct: 75 PLSIPSYREMILKAIEGLNEENGSNKSSISKYIESTYGGLPQGHKVLLNLHLARMRDSGE 254
Query: 98 LIMLKKSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPKRRGRPPKPK-SLSNGLKRRPPK 156
L+ K +Y + NA PPR G RGRPPK K S S+G PK
Sbjct: 255 LVFWKNNY-------TKRDPNA--------PPRRG----RGRPPKAKESFSSGAMFSQPK 377
Query: 157 HQLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNAAALPPPHAVGGVDSSLMVPGRPQKL 216
+ P P Q PVG+ RPRGRP K + P A G P L
Sbjct: 378 PRGSPPKDPNGPPKSPQMKAPVGTGRPRGRPTKMSR---PTGAFDG----------PLPL 518
Query: 217 AVRGRPKNPAGRPVGRP---KGTTSANI 241
A+ +GRP GRP K T A+I
Sbjct: 519 AL---GTGSSGRPKGRPP*IKSTIVADI 593
>TC77788 similar to PIR|S57948|S57948 HMGI/Y protein - garden pea, partial
(87%)
Length = 981
Score = 102 bits (255), Expect = 2e-22
Identities = 73/193 (37%), Positives = 93/193 (47%), Gaps = 3/193 (1%)
Frame = +3
Query: 38 PANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGL 97
P + PPY EMI +A+EAL E +GS+K++I+ YIE Y +LP HS +L +HL ++KD G
Sbjct: 132 PLSLPPYPEMIMKALEALNEPNGSNKSSISNYIESIYGELPEGHSIVLANHLNQMKDNGD 311
Query: 98 LIMLKKSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPKRRGRPPKPKSLSNGLKRRPPKH 157
L+ K +Y P PP+ G RGRPPKPK
Sbjct: 312 LVFAKNNYMKPDP---------------NAPPKRG----RGRPPKPK------------- 395
Query: 158 QLQATVIPFADPSLAQPPVPVGSP-RPRGRPRKNAAALP--PPHAVGGVDSSLMVPGRPQ 214
DP LA PP V SP RPRGRP K+ A P P A G GRP+
Sbjct: 396 ----------DP-LAPPPAAVLSPPRPRGRPPKDPNAPPKTPKPASSGRGR-----GRPK 527
Query: 215 KLAVRGRPKNPAG 227
K+ NP+G
Sbjct: 528 KVQRTENVSNPSG 566
>TC78344 similar to GP|13540405|gb|AAK29456.1 histone H1 {Lens culinaris},
partial (86%)
Length = 1215
Score = 84.7 bits (208), Expect = 5e-17
Identities = 65/214 (30%), Positives = 99/214 (45%), Gaps = 8/214 (3%)
Frame = +2
Query: 41 HPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIM 100
HP Y EM+ AI LKEK+GSS+ A+AK+IEE + +LP +L +K+L +G L+
Sbjct: 263 HPTYEEMVTDAIVTLKEKNGSSQYALAKFIEEKHKNLPANFKKILLVQIKKLVASGKLVK 442
Query: 101 LKKSYKLPSSLPSDITQNAA---QPVRRGRPPRSGIP----KRRGRPPKPKSLSNGLKRR 153
+K SYKLP+ + + AA +P + + P + P K + P K K+ + K
Sbjct: 443 VKGSYKLPAKSAAPAKKPAAAKPKPKPKAKAPVAKAPAAKSKAKAAPAKAKAKAKA-KAA 619
Query: 154 PPKHQLQATVIPFADPSLAQPPVPVGSPRPRGR-PRKNAAALPPPHAVGGVDSSLMVPGR 212
P K + A P A A PV +P+ + P A A+P + +
Sbjct: 620 PAKAKPAAKAKPAAKAKPAAKAKPVAKAKPKAKAPVAKANAVP-----------VAAKAK 766
Query: 213 PQKLAVRGRPKNPAGRPVGRPKGTTSANIAQRIA 246
P A PA RP + +T + +R A
Sbjct: 767 PAAKAKPAAKAKPAARPAKASRTSTRTSPGKRAA 868
>TC85720 similar to SP|P08283|H1_PEA Histone H1. [Garden pea] {Pisum
sativum}, partial (73%)
Length = 968
Score = 80.5 bits (197), Expect = 9e-16
Identities = 60/170 (35%), Positives = 88/170 (51%), Gaps = 5/170 (2%)
Frame = +3
Query: 28 DSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTH 87
D ++ +S P+ HP Y EMI AI LKE+ GSS+ AIAK+IEE + LP LL H
Sbjct: 87 DISMATKASKPS-HPTYEEMIKDAIVTLKERTGSSQFAIAKFIEEKHKQLPSNFKKLLLH 263
Query: 88 HLKRLKDTGLLIMLKKSYKL-PSSLPS-DITQNAAQPVRRGRPPRSGIPKRRGRPPKPKS 145
+LK+ +G LI +K S+KL P++ PS + AA+P + + + + G PK K+
Sbjct: 264 NLKKNVASGKLIKVKGSFKLSPATKPSAEKKPAAAKPKTKAVAKVTAVKAKPGPKPKAKA 443
Query: 146 LSNGLKRRPPKHQLQATVIPFA---DPSLAQPPVPVGSPRPRGRPRKNAA 192
+ K ++ A P A P+ A+P P P+ K AA
Sbjct: 444 V--------VKTKVAAKAKPVAAKPKPAAAKPKAPAAKPKAAAAKAKPAA 569
>TC85721 similar to SP|P08283|H1_PEA Histone H1. [Garden pea] {Pisum
sativum}, partial (60%)
Length = 995
Score = 77.8 bits (190), Expect = 6e-15
Identities = 56/159 (35%), Positives = 80/159 (50%)
Frame = +1
Query: 38 PANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGL 97
PA+HP Y EMI AI +LKE+ GSS+ AIAK+IEE + LP LL +LK+ +G
Sbjct: 274 PASHPTYEEMIKDAIVSLKERTGSSQYAIAKFIEEKHKQLPSNFKKLLLQNLKKNVASGK 453
Query: 98 LIMLKKSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPKRRGRPPKPKSLSNGLKRRPPKH 157
L+ +K S+KL SS + A+P + + PK + KPK+ + K +P
Sbjct: 454 LVKVKGSFKL-SSATKPAAKVKAKPAAKPKAKAVVKPKTKSVTAKPKAAA-ATKPKPAAT 627
Query: 158 QLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNAAALPP 196
+ +A + A+P V R P K AA P
Sbjct: 628 KSKA-ASKAKTAAKAKPNAKVAKTTARTSPGKKVAAAKP 741
>TC85722 similar to SP|P08283|H1_PEA Histone H1. [Garden pea] {Pisum
sativum}, partial (61%)
Length = 897
Score = 75.1 bits (183), Expect = 4e-14
Identities = 53/159 (33%), Positives = 78/159 (48%)
Frame = +3
Query: 38 PANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGL 97
PA+HP Y EMI AI +LKE+ GSS+ AIAK+IEE + LP LL +LK+ +G
Sbjct: 240 PASHPTYEEMIKDAIVSLKERTGSSQYAIAKFIEEKHKQLPSNFKKLLLQNLKKNVASGK 419
Query: 98 LIMLKKSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPKRRGRPPKPKSLSNGLKRRPPKH 157
L+ +K S+KL SS + A+P + + P+ + KPK+ + K +
Sbjct: 420 LVKVKGSFKL-SSATKPAAKVKAKPAAKPKAKAVVKPRTKSVTAKPKAAA--AKPKSAAT 590
Query: 158 QLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNAAALPP 196
+ +A V + +P V R P K A P
Sbjct: 591 KPKAAVGKAKTAAKVKPNAKVAKTTTRTSPGKKVATAKP 707
>TC77010 similar to PIR|S59560|S59560 histone H1.41 - garden pea, partial
(82%)
Length = 1535
Score = 73.9 bits (180), Expect = 8e-14
Identities = 50/144 (34%), Positives = 71/144 (48%), Gaps = 7/144 (4%)
Frame = +2
Query: 38 PANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGL 97
P +HP YAEMI AI +LKE+ GSS+ AI K+IEE + DL P L+ HLK+ +G
Sbjct: 137 PLSHPTYAEMITEAIVSLKERTGSSQHAITKFIEEKHKDLSPTFRKLILLHLKKSVASGK 316
Query: 98 LIMLKKSYKLPSSLPSDITQNA-------AQPVRRGRPPRSGIPKRRGRPPKPKSLSNGL 150
L+ +K S+K+ ++ A A+ V + + PK + KPK+ +
Sbjct: 317 LVKVKNSFKIAPAVAKTAPVKAAIAPAKKAKAVTKPAAKAATKPKAKAAAVKPKAAAKPK 496
Query: 151 KRRPPKHQLQATVIPFADPSLAQP 174
PK A V P A A P
Sbjct: 497 AAAKPK----AVVKPKAKSVKATP 556
>TC89413 weakly similar to GP|8778473|gb|AAF79481.1| F1L3.23 {Arabidopsis
thaliana}, partial (47%)
Length = 749
Score = 53.1 bits (126), Expect = 2e-07
Identities = 41/140 (29%), Positives = 65/140 (46%)
Frame = +1
Query: 6 VPPPPPPPTAVPFTQEAINHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTA 65
VPPPPPPP + Q+ + + N P Y MIY A+ LK+ +GS A
Sbjct: 355 VPPPPPPPLQIE--QDVVKN--------------NTPRYDVMIYEALSTLKDTNGSDVIA 486
Query: 66 IAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSYKLPSSLPSDITQNAAQPVRR 125
IA +IE+ + +P L L+ L G L + +K+ +L + ++ + +
Sbjct: 487 IASFIEQKH-QVPQNFKKSLKARLRMLVGHGKLEKEQNCFKIKEAL--SVKKSPSPKQKE 657
Query: 126 GRPPRSGIPKRRGRPPKPKS 145
+P S PKR+ PK +S
Sbjct: 658 AKPSPS--PKRKMVRPKRQS 711
>BQ151174 similar to GP|11036868|gb| PxORF73 peptide {Plutella xylostella
granulovirus}, partial (42%)
Length = 909
Score = 50.1 bits (118), Expect = 1e-06
Identities = 68/245 (27%), Positives = 85/245 (33%), Gaps = 22/245 (8%)
Frame = +2
Query: 7 PPPPPPPTAVPFTQEAINHAPDSNI---PINSSAP--ANHPPYAEMIYRAIEALKEKDGS 61
PP PP P + P N P P A+HPP R + + D
Sbjct: 26 PPSDPPKKRTPKPETPNRKKPQKNKKEPPKKRKTPPEASHPPPRPRPPRPPQPNHQHDKP 205
Query: 62 SKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSYKLPSSLPSDITQNAAQ 121
KT + +T P H + T +S P + P D +
Sbjct: 206 QKTT---HPHHPHTPPPTPHPPNPPPNHPNHPTT-------RSAHGPRNHPGDAPHRRRR 355
Query: 122 PVRRGRPPRSG-------------IPK-RRGRPPKPKSLSNGLKRRPPKHQLQATVIPFA 167
P + G PPR G PK R GR PKP S R P + AT P
Sbjct: 356 PNKPGPPPRRGGGQGGRAPAPPPPPPKAREGRTPKPDPGSKENHNRTPGKEGPATHGP-- 529
Query: 168 DPSLAQPPVPVGSPRPRGRPRKNA--AALPPPH-AVGGVDSSLMVPGRPQKLAVRGRPKN 224
P PP +P+ RG+ K A PPPH GG P P+K + RG
Sbjct: 530 -PEKKTPP---PTPKRRGKHTKRAPGGGPPPPHPGRGGGGPGGPPPPPPKKNSERGGRAA 697
Query: 225 PAGRP 229
P GRP
Sbjct: 698 PRGRP 712
Score = 37.0 bits (84), Expect = 0.011
Identities = 62/259 (23%), Positives = 75/259 (28%), Gaps = 28/259 (10%)
Frame = +1
Query: 7 PPPPPPPTAVPFTQEAINHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAI 66
PPPPPPP P T+ P +N P P + PP
Sbjct: 145 PPPPPPPPQAPPTKPPTRQTPKNNTP---PPPPHTPP----------------------- 246
Query: 67 AKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSYKLPSSLPSDITQNAAQPVRRG 126
+ PP HH KR + P + R
Sbjct: 247 -----DPTPPQPPPQPPKPPHHEKRPRTPEPPGGRPPPPTTPKQARPTTQERGGARGARP 411
Query: 127 RPPRS-----GIPKRRGRPPK-------PKSLSNGLKRRP-----PKHQLQATVIPFADP 169
RPP + G + RP K P+ G R P P H + P
Sbjct: 412 RPPPAPPQGTGGEDTKTRPGKQREPQQNPRERGTGHARTPGKKNTPPHTKKKGETHKKSP 591
Query: 170 SLAQPPVPVGSPRPRGRPRKNAAALPP--PHAVGGVDSSLMVPGRPQKLAV--------R 219
PP +PRP G + A A PP GG PG +K R
Sbjct: 592 GGRTPPP---TPRPGGGGARGAPAPPPQKKQREGGKSGPPRAPGHEEKKPAATSRKRPPR 762
Query: 220 G-RPKNPAGRPVGRPKGTT 237
G R KNPA R K T
Sbjct: 763 GAREKNPAAHAREREKKKT 819
Score = 29.6 bits (65), Expect = 1.8
Identities = 55/214 (25%), Positives = 64/214 (29%), Gaps = 24/214 (11%)
Frame = +3
Query: 7 PPPPPPPTAVPFTQEAINHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAI 66
P P PPT P TQ P P + PP A+ + A +G K
Sbjct: 243 PRPHTPPTPPPTTQTT----PPREAPTDPGTTRGTPPTADDAQTS-PAHHPGEGGGKGGA 407
Query: 67 AKYIEEAYTDLPPAHST----LLTHHLKRL-------KDTGLLIMLKKSYKLPSSLPSDI 115
PP H T KR +D KK + P
Sbjct: 408 PPPPPRP----PPRHGRGGHQNQTREAKRTTTEPQGKRDRPRTDPRKKKHPPPHQKEGGN 575
Query: 116 TQNAAQPVRRGRPPRSGIPKRRG------RPPKPKSLSNGLKRRPPKHQLQATVIPFADP 169
TQ RG P P G RPP PK + G + RPP D
Sbjct: 576 TQKEP----RGEDPPPHTPAGGGGGPGGPRPPPPKKTARGGEERPPAGARARREKTRGD- 740
Query: 170 SLAQPPVPVGSPR--PRGR-----PRKNAAALPP 196
Q P G PR PRG +KN PP
Sbjct: 741 --QQEAAPAGRPRKKPRGAREREGKKKNPQKKPP 836
Score = 29.6 bits (65), Expect = 1.8
Identities = 33/127 (25%), Positives = 44/127 (33%), Gaps = 7/127 (5%)
Frame = +1
Query: 112 PSDITQNAAQ-PVRRGRPPRSGIPKRRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADPS 170
P + T+ + P ++ PPR G P PP P +PP Q P P
Sbjct: 76 PEEATKKQKRAPEKKKNPPR-GQP-----PPPPPPPPQAPPTKPPTRQTPKNNTPPPPPH 237
Query: 171 LAQPPVPVGSPRPRGRPRKNAAALPPPHAVGGVDSSLMVP--GRP---QKLAVRG-RPKN 224
P P P +P + P GG P RP ++ RG RP+
Sbjct: 238 TPPDPTPPQPPPQPPKPPHHEKRPRTPEPPGGRPPPPTTPKQARPTTQERGGARGARPRP 417
Query: 225 PAGRPVG 231
P P G
Sbjct: 418 PPAPPQG 438
Score = 29.3 bits (64), Expect = 2.4
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Frame = +3
Query: 128 PPRSGIPKRRGRPPK--PKSLSNGLKRRPPKHQLQATVIPFADPSLAQPPVPVGSPRPRG 185
P P+R+G P + P S+ ++ P+ + + P P PP P
Sbjct: 21 PSPQATPQRKGHPSQKPPTGRSHKKTKKSPRKKEKPPPRPATPPPAPAPPGPPNQTTNTT 200
Query: 186 RPRKNAAALPPPH 198
P+K P H
Sbjct: 201 NPKKQHTPTTPTH 239
>TC78495 homologue to PIR|S53504|S53504 extensin-like protein S3 - alfalfa,
partial (97%)
Length = 1049
Score = 40.8 bits (94), Expect = 8e-04
Identities = 25/91 (27%), Positives = 35/91 (37%), Gaps = 1/91 (1%)
Frame = +3
Query: 108 PSSLPSDITQNAAQPVRRGRPP-RSGIPKRRGRPPKPKSLSNGLKRRPPKHQLQATVIPF 166
P++ P Q + PV+ PP +S P + PP +S ++ PP Q P
Sbjct: 285 PANTPPTTPQASPPPVQSSPPPVQSSPPPLQSSPPPAQSTPPPVQSSPPPVQQSPPPTPL 464
Query: 167 ADPSLAQPPVPVGSPRPRGRPRKNAAALPPP 197
P + P P P P A PPP
Sbjct: 465 TPPPVQSTPPPASPPPASPPPFSPPPATPPP 557
>BQ141681 weakly similar to GP|15145793|gb| basic proline-rich protein {Sus
scrofa}, partial (9%)
Length = 516
Score = 40.8 bits (94), Expect = 8e-04
Identities = 44/138 (31%), Positives = 54/138 (38%), Gaps = 12/138 (8%)
Frame = +1
Query: 121 QPVRRGRP--PRSGIPKRRG--RPPKPKSLSNGLKRRPPKHQLQATVIPFADPSLAQP-- 174
+P RG+P + PK RG + PKPK +N K P K + A A +P
Sbjct: 124 KPKTRGQPNQKQEHRPKTRGPNKGPKPKGKNNPQKNGPRKRRRTARRRSSARGRRGKPGE 303
Query: 175 ---PVPVGSPRPRGR--PRKNAAALPPPHAVGGVDSSLMVPGRPQKLAVR-GRPKNPAGR 228
P P G+ PR R P+ A PP GG P RP A R P P
Sbjct: 304 SGTPTPPGTAAPRKRPPPQGRAPRRAPPGGPGG-------PARPPPDAARPPPPAGPGAN 462
Query: 229 PVGRPKGTTSANIAQRIA 246
P R A A+R A
Sbjct: 463 PARRAGRRGPAPRARRAA 516
Score = 33.1 bits (74), Expect = 0.17
Identities = 24/81 (29%), Positives = 31/81 (37%), Gaps = 5/81 (6%)
Frame = +1
Query: 117 QNAAQPVRRGRPPRSGIPKRRGRP-----PKPKSLSNGLKRRPPKHQLQATVIPFADPSL 171
+N + RR RS RRG+P P P + KR PP+ + P
Sbjct: 226 KNGPRKRRRTARRRSSARGRRGKPGESGTPTPPGTAAPRKRPPPQGRAPRRAPPGGPGGP 405
Query: 172 AQPPVPVGSPRPRGRPRKNAA 192
A+PP P P P N A
Sbjct: 406 ARPPPDAARPPPPAGPGANPA 468
Score = 31.6 bits (70), Expect = 0.48
Identities = 22/56 (39%), Positives = 26/56 (46%)
Frame = -1
Query: 180 SPRPRGRPRKNAAALPPPHAVGGVDSSLMVPGRPQKLAVRGRPKNPAGRPVGRPKG 235
SPR R RP PPP A GGV + G P++ VRG P+G G G
Sbjct: 510 SPRARRRP-------PPPRAPGGVRARARGGGGPRR--VRGGAGRPSGSAGGGAAG 370
Score = 30.8 bits (68), Expect = 0.82
Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 1/100 (1%)
Frame = +3
Query: 103 KSYKLPSS-LPSDITQNAAQPVRRGRPPRSGIPKRRGRPPKPKSLSNGLKRRPPKHQLQA 161
K K P+ P++ +N + +R R R KR PP + K+ PP
Sbjct: 204 KGQKQPTKERPAEKEKNRQKAKQRARATRKTGRKRDPNPPGDRGAP---KKTPP------ 356
Query: 162 TVIPFADPSLAQPPVPVGSPRPRGRPRKNAAALPPPHAVG 201
P + PP P R G P A PPP G
Sbjct: 357 -------PGPSPPPRPPRRTRRAGPPPPGRGAAPPPRGPG 455
>TC88557 weakly similar to GP|17065320|gb|AAL32814.1 Unknown protein
{Arabidopsis thaliana}, partial (38%)
Length = 673
Score = 40.8 bits (94), Expect = 8e-04
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Frame = +2
Query: 47 MIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSYK 106
+I+ +I LKE GS AIA YIE+ Y PP LL+ LK + +G L+ + Y+
Sbjct: 14 LIFDSIVKLKEPKGSDIAAIAAYIEDQYRS-PPNLIKLLSTKLKHMVASGKLVKVNHKYR 190
Query: 107 LP--SSLPSDITQNAAQPVRRGRPPRS 131
+ S+ S+ + ++ + GRP S
Sbjct: 191 IATNSTKTSEKRRCSSLLLLEGRPKDS 271
>TC86848 similar to GP|10177413|dbj|BAB10544. fibrillarin-like {Arabidopsis
thaliana}, partial (92%)
Length = 1250
Score = 38.5 bits (88), Expect = 0.004
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = -2
Query: 169 PSLAQPPVPVGSPRPRGRPRKNAAALPPPHAVGGVDSSLMVPGR---PQKLAVRGRPKNP 225
P PP+P PRP RP LPPP A+ GV S +P + P L P P
Sbjct: 271 PPFMPPPLP--PPRPPPRPPLPPPPLPPPLALNGVPLSPPLPPKPPLPPPLPPLSPPLPP 98
Query: 226 AGRPVGRPKGTTSANIAQRIANE 248
P RP+ + + +R+ +
Sbjct: 97 LNPPPPRPRTGGAIAVVERLRRD 29
Score = 27.3 bits (59), Expect = 9.1
Identities = 20/58 (34%), Positives = 24/58 (40%), Gaps = 1/58 (1%)
Frame = -2
Query: 128 PPRSGIPKRRGRPPKPKSLS-NGLKRRPPKHQLQATVIPFADPSLAQPPVPVGSPRPR 184
PPR +P PP P L+ NG+ PP P S PP+ PRPR
Sbjct: 232 PPRPPLPP----PPLPPPLALNGVPLSPPLPPKPPLPPPLPPLSPPLPPLNPPPPRPR 71
>BQ144482 similar to GP|6523547|emb| hydroxyproline-rich glycoprotein DZ-HRGP
{Volvox carteri f. nagariensis}, partial (16%)
Length = 993
Score = 37.7 bits (86), Expect = 0.007
Identities = 32/112 (28%), Positives = 38/112 (33%), Gaps = 2/112 (1%)
Frame = +1
Query: 125 RGRPPRSGIPKRRGRP--PKPKSLSNGLKRRPPKHQLQATVIPFADPSLAQPPVPVGSPR 182
RG P G +RRG P+P PP + A P L +PP P P
Sbjct: 103 RGEGPAGGRARRRGPATGPRPPKSPRAHLFPPPSPSISAPPPPLPPLPLFRPPPPPPPPP 282
Query: 183 PRGRPRKNAAALPPPHAVGGVDSSLMVPGRPQKLAVRGRPKNPAGRPVGRPK 234
P A A P P P P + R RP P GRP+
Sbjct: 283 PLSLSLAPAFAPPAPGPPR--------PPPPPRPPARPRPARVLAGPAGRPR 414
Score = 36.2 bits (82), Expect = 0.020
Identities = 38/119 (31%), Positives = 46/119 (37%), Gaps = 3/119 (2%)
Frame = +3
Query: 119 AAQPVRRGRPPRS--GIPKRRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADPSLAQPPV 176
AA RG P R + R RPP PK + RPP P P +PP
Sbjct: 87 AAGGAARGGPGRGPGAAARPRDRPPPPK-----VAPRPP--------FPPPLPFYLRPPS 227
Query: 177 PVGSPRPRGRPRKNAAALPPPHAVG-GVDSSLMVPGRPQKLAVRGRPKNPAGRPVGRPK 234
P SP P P + PP +G G+ P P A RP P+ VGRP+
Sbjct: 228 PSPSPPPLSPPSPSPPPPPPQPLLGPGLRPPGPRPPAPPPPAPAPRPA-PSRPSVGRPR 401
Score = 33.1 bits (74), Expect = 0.17
Identities = 32/108 (29%), Positives = 37/108 (33%), Gaps = 1/108 (0%)
Frame = +1
Query: 128 PPRSGIPKRRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADPSLAQPPVPVGSPRPRGRP 187
PP P RPP P PP L ++ P P PP P PRP RP
Sbjct: 220 PPPPLPPLPLFRPPPPP---------PPPPPLSLSLAPAFAPPAPGPPRPPPPPRPPARP 372
Query: 188 RKNAAALPPPHAVGGVDSSLMVPGRPQKLAVRGRPKNPA-GRPVGRPK 234
R P + G GRP+ R P RP GR +
Sbjct: 373 R-------PARVLAG------PAGRPRHWRASRRRVTPTPARPGGRKR 477
Score = 31.2 bits (69), Expect = 0.63
Identities = 34/121 (28%), Positives = 45/121 (37%), Gaps = 16/121 (13%)
Frame = -1
Query: 135 KRRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADP------------SLAQPPVPVGSPR 182
++RG P P G +R PP+ I +A P +L+ P P G+PR
Sbjct: 660 RKRGPGPHP---GRGGERPPPE------AIFWASPPLLKGGGGGFFKTLSPPSPPGGAPR 508
Query: 183 PRGRPRKNAAALPPPHAVGG----VDSSLMVPGRPQKLAVRGRPKNPAGRPVGRPKGTTS 238
+ +K +LPPP A G V G P P G P GR G
Sbjct: 507 SPLKKKKGGRSLPPPRASRGRRYAAARCAPVTGPPGGAGQHSGGTGPGGGP-GRGGGARG 331
Query: 239 A 239
A
Sbjct: 330 A 328
Score = 27.3 bits (59), Expect = 9.1
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 8 PPPPPPTAVPFTQEAINHAPDSNIPINSSAPANHP 42
PPPPPP+A P+ + + P P P P
Sbjct: 269 PPPPPPSASPWPRPSPPRPPAPRAPPPRPGPPPGP 373
>TC91646 weakly similar to GP|6523547|emb|CAB62280.1 hydroxyproline-rich
glycoprotein DZ-HRGP {Volvox carteri f. nagariensis},
partial (15%)
Length = 984
Score = 37.4 bits (85), Expect = 0.009
Identities = 34/108 (31%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Frame = +1
Query: 108 PSSLPSDITQNAAQPVRRG-RPPRSGIPKRRGRPPKPKSLSNGLKRRPPKHQLQATVIP- 165
P SL + + A+ P R RPP P++ PP+P S R P + T P
Sbjct: 319 PPSLTTSPSPTASPPPRSPPRPPPRSPPRQLMSPPRPLPRSPSPPPRNPPELSRTTPTPR 498
Query: 166 ---FADPSLAQPPV---PVGSPRPRGRPRKNAAALPPPHAVGGVDSSL 207
PS PP PV P PR R+ LPPP + SS+
Sbjct: 499 PPMSPSPSPTSPPAATPPVSRPPPRPALRR---LLPPPPLPPTLPSSM 633
Score = 33.9 bits (76), Expect = 0.097
Identities = 27/89 (30%), Positives = 32/89 (35%)
Frame = +1
Query: 137 RGRPPKPKSLSNGLKRRPPKHQLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNAAALPP 196
R +P P L RP L P P L PP SP P P + PP
Sbjct: 211 RQQP*LPSPLMEAPSPRPSPSPLSPLRFPSRLP-LTTPPSLTTSPSPTASPPPRSPPRPP 387
Query: 197 PHAVGGVDSSLMVPGRPQKLAVRGRPKNP 225
P + LM P RP + P+NP
Sbjct: 388 PRS---PPRQLMSPPRPLPRSPSPPPRNP 465
>BQ144502 weakly similar to GP|6523547|emb hydroxyproline-rich glycoprotein
DZ-HRGP {Volvox carteri f. nagariensis}, partial (39%)
Length = 1358
Score = 37.4 bits (85), Expect = 0.009
Identities = 48/202 (23%), Positives = 63/202 (30%), Gaps = 10/202 (4%)
Frame = -1
Query: 6 VPPPPPPPTAVPFTQEAINHAPDSN--------IPINSSAPANHPPYAEMIYRAIEALKE 57
VPPPP PP A P ++ A P P ++ PA HP +
Sbjct: 545 VPPPPSPPRAPPQSEAAPPPPPPPRGARPRAPLRPPSAPDPAGHPRAPRQGVAVVPG--P 372
Query: 58 KDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSYKLPSSLPSDITQ 117
+ G+S A + E PP + P + P
Sbjct: 371 RSGNSPRAAHRGPEPRPLPRPPPPTR------------------------PPAAPGPGPP 264
Query: 118 NAAQPVRRGRPPRS-GIPKRRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADPSLAQPP- 175
A P +PP + GIP PP+ + L RPP P A P PP
Sbjct: 263 PAPGPTPLSKPPAAEGIPPATAPPPRARRL------RPPSAPAPPPTPPAAAPPAPTPPH 102
Query: 176 VPVGSPRPRGRPRKNAAALPPP 197
P +P P PPP
Sbjct: 101 APA*APHLPPPPPAPRPPRPPP 36
Score = 37.4 bits (85), Expect = 0.009
Identities = 44/158 (27%), Positives = 55/158 (33%), Gaps = 28/158 (17%)
Frame = -3
Query: 106 KLPSSLPSDITQNAAQPVRRGR-----PPRSGI-------PKRRGR------PPKPKSLS 147
++P S + AA+ VR R PPR + P R R PP P S
Sbjct: 840 QIPPLRRSIVRARAARAVRPPRTAQRHPPRRTLRASAAQHPSRAPRRHPPPPPPPPPSSP 661
Query: 148 NGLKRRPPKHQLQATVIPFADPS---------LAQPPVPVGSPRPRGRPRKNAAALPPPH 198
G+ RP + P A PS + PP +P P P PPP
Sbjct: 660 PGMGTRPSCQENWWAAPPGARPSRPSRYIPPPTSPPPASPPAPVPPQSPSTIRGRAPPP- 484
Query: 199 AVGGVDSSLMVPGRPQKLAVRGRPKNPAGR-PVGRPKG 235
P RP R RP+ P R P GR +G
Sbjct: 483 ----APPPRRPPARPPPAPQRPRPRRPPARPPSGRRRG 382
Score = 34.7 bits (78), Expect = 0.057
Identities = 32/111 (28%), Positives = 39/111 (34%)
Frame = -1
Query: 127 RPPRSGIPKRRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADPSLAQPPVPVGSPRPRGR 186
RPPR P PP P PP+ Q+ P PP P RPR
Sbjct: 569 RPPRPPPPV----PPPPS---------PPRAPPQSEAAP-------PPPPPPRGARPRAP 450
Query: 187 PRKNAAALPPPHAVGGVDSSLMVPGRPQKLAVRGRPKNPAGRPVGRPKGTT 237
R +A P H +VPG + R + P RP+ RP T
Sbjct: 449 LRPPSAPDPAGHPRAPRQGVAVVPGPRSGNSPRAAHRGPEPRPLPRPPPPT 297
Score = 34.3 bits (77), Expect = 0.074
Identities = 52/200 (26%), Positives = 64/200 (32%), Gaps = 3/200 (1%)
Frame = -3
Query: 3 SIWVPPPPPPPTAVPFTQEAINHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSS 62
S ++PPP PP A P P S I AP PP R A +
Sbjct: 585 SRYIPPPTSPPPASPPAPVP----PQSPSTIRGRAPPPAPPPRRPPARPPPAPQRPRPRR 418
Query: 63 KTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSYKLPSSLPSDITQNAAQP 122
PPA R K L + PS P T A +
Sbjct: 417 ---------------PPARPPSGRRRGARAKVRKLPKGGTPGSRAPSPAPPSPTHPAPRR 283
Query: 123 VRRGRPPRSGIPKRRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADPSLAQPPVPV---G 179
G PPR RP P + G + PP+H+ P P +PP G
Sbjct: 282 PWTGPPPRP-------RPHSP*QAACG-RGHPPRHRPPPPGPPPPPPLGPRPPPHPPRSG 127
Query: 180 SPRPRGRPRKNAAALPPPHA 199
PRP R + + PPP A
Sbjct: 126 PPRPHPPTRTSLSPPPPPPA 67
>BQ141932 weakly similar to GP|6523547|emb hydroxyproline-rich glycoprotein
DZ-HRGP {Volvox carteri f. nagariensis}, partial (30%)
Length = 1338
Score = 36.6 bits (83), Expect = 0.015
Identities = 61/229 (26%), Positives = 79/229 (33%), Gaps = 36/229 (15%)
Frame = -1
Query: 6 VPPPP---------PPPTAVPFTQEAINHAPDSNIPINSSAPA---NHPPYAEMIYRAIE 53
VP PP P PTA T+ + P++ AP N PP R+ +
Sbjct: 1008 VPRPPRAAVSILHLPLPTATTHTRHTHTPLSPRSAPLHLLAPTFTTNTPPLIATRPRSTD 829
Query: 54 ALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSYKLPSSLPS 113
G T Y P + RL+D +++K +++ P P
Sbjct: 828 ITPTLRGQPPTP------RPYPQ--PLRTRAHVGAYPRLRDAAHAVLVK-AHRSPR--PP 682
Query: 114 DITQNAAQPVRRGRPPR---------------SGIPKRRGRPPKPKSLSNGLKRRPPKHQ 158
+ + A P R RP R S P P P S S RP H
Sbjct: 681 HVGPSLAHPARP-RPGRVLLVMQYPTSFLGTGSAPPAIHHHPNPPASQSPATLNRPTSHT 505
Query: 159 LQATVIPFADP------SLAQPPVP---VGSPRPRGRPRKNAAALPPPH 198
A P P SL+ PP P PRP GRPR + A PPPH
Sbjct: 504 -PACPPPSRPPPHPRAPSLSPPPPPHPPTSPPRP-GRPRSSTLA-PPPH 367
Score = 31.2 bits (69), Expect = 0.63
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = -2
Query: 139 RPPKPKSLSNGLKRRPPKHQLQATVIPFADPSLAQPPVPVGSPRP--RGRPRKNAAALPP 196
RPP P +++G + PP+ +T P P PP P P P P ++L P
Sbjct: 425 RPPPPAPVAHGHRPSPPRRIGSSTPPPPFVPIAGFPPPPSPPPPPPLPLHPPPQLSSL-P 249
Query: 197 PHAVGGVDSSLMVP 210
PHA SS ++P
Sbjct: 248 PHA----PSSFLLP 219
Score = 30.0 bits (66), Expect = 1.4
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Frame = -1
Query: 8 PPPPPPTAVPFTQEAINHAPDSNI----PINSSAPANHPP 43
PPPPPPT P + A+ P P N +P+ PP
Sbjct: 306 PPPPPPTPPPSSPPALVSPPPRPFLFPPPPNQPSPSPSPP 187
Score = 29.6 bits (65), Expect = 1.8
Identities = 11/23 (47%), Positives = 13/23 (55%)
Frame = -3
Query: 7 PPPPPPPTAVPFTQEAINHAPDS 29
PPPPP PT P A + P+S
Sbjct: 178 PPPPPAPTTTPI*APAAGYTPES 110
Score = 28.9 bits (63), Expect = 3.1
Identities = 32/112 (28%), Positives = 34/112 (29%), Gaps = 20/112 (17%)
Frame = -1
Query: 106 KLPSSLPSDITQNAAQPVRRGRPPRS--------------------GIPKRRGRPPKPKS 145
+ PS P P R GRP S GIP PP P +
Sbjct: 465 RAPSLSPPPPPHPPTSPPRPGRPRSSTLAPPPHRQFHSPSALCTHCGIPPPAVPPPPPPT 286
Query: 146 LSNGLKRRPPKHQLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNAAALPPP 197
PP A V P P L PP SP P P LPPP
Sbjct: 285 --------PPPSSPPALVSPPPRPFLFPPPPNQPSPSPSPPP---PPPLPPP 163
Score = 28.9 bits (63), Expect = 3.1
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Frame = -2
Query: 7 PPPPPPPTAVPF-----TQEAINHAPDS-NIPINSSAPANHPPY 44
PP PPPP +P HAP S +P+ S P PP+
Sbjct: 314 PPSPPPPPPLPLHPPPQLSSLPPHAPSSFLLPLTSPPPPPPPPH 183
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.314 0.133 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,842,900
Number of Sequences: 36976
Number of extensions: 232588
Number of successful extensions: 6021
Number of sequences better than 10.0: 241
Number of HSP's better than 10.0 without gapping: 2636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4680
length of query: 352
length of database: 9,014,727
effective HSP length: 97
effective length of query: 255
effective length of database: 5,428,055
effective search space: 1384154025
effective search space used: 1384154025
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0042.15