BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0042.10
(217 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG585169 similar to GP|1370152|emb RAB11F {Lotus japonicus}, par... 310 3e-85
TC88814 homologue to PIR|T06447|T06447 GTP-binding protein - gar... 234 2e-62
TC87342 PIR|S41431|S41431 GTP-binding protein ras-like - fava b... 233 6e-62
TC77922 homologue to PIR|T06448|T06448 GTP-binding protein - gar... 228 2e-60
TC86480 homologue to SP|Q40193|R11C_LOTJA Ras-related protein Ra... 226 5e-60
TC87022 homologue to SP|O04486|RB1C_ARATH Ras-related protein Ra... 216 4e-57
TC86724 homologue to PIR|T06445|T06445 GTP-binding protein - gar... 207 2e-54
TC82103 similar to GP|1370144|emb|CAA98178.1 RAB11B {Lotus japon... 205 9e-54
TC82393 homologue to PIR|T06447|T06447 GTP-binding protein - gar... 185 1e-51
TC88069 homologue to GP|1370154|emb|CAA98183.1 RAB11G {Lotus jap... 194 2e-50
TC81677 homologue to PIR|T06446|T06446 GTP-binding protein - gar... 191 2e-49
BE205479 homologue to PIR|T06443|T06 GTP-binding protein - garde... 176 6e-45
TC77446 homologue to GP|303750|dbj|BAA02116.1| GTP-binding prote... 173 5e-44
TC82639 homologue to GP|9294115|dbj|BAB01966.1 GTP-binding prote... 171 2e-43
AL375304 homologue to PIR|T06445|T06 GTP-binding protein - garde... 171 2e-43
TC79203 homologue to PIR|S41430|S41430 GTP-binding protein ras-... 170 3e-43
TC85959 homologue to PIR|S57471|S57471 GTP-binding protein GTP6 ... 169 6e-43
TC77453 homologue to GP|303732|dbj|BAA02117.1| GTP-binding prote... 168 2e-42
TC77618 homologue to PIR|S57478|S57478 GTP-binding protein GTP13... 167 2e-42
TC85957 homologue to PIR|S57471|S57471 GTP-binding protein GTP6 ... 166 6e-42
>BG585169 similar to GP|1370152|emb RAB11F {Lotus japonicus}, partial (83%)
Length = 668
Score = 310 bits (794), Expect = 3e-85
Identities = 154/183 (84%), Positives = 165/183 (90%)
Frame = +3
Query: 2 MADAFDEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKL 61
MAD FDE+CDYLFKTVLIGDSGVGKSNL+SRF KDEFRLDSKPTIGVEF Y NIKVRDKL
Sbjct: 120 MADTFDEQCDYLFKTVLIGDSGVGKSNLISRFTKDEFRLDSKPTIGVEFGYKNIKVRDKL 299
Query: 62 IKAQIWDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVV 121
IKAQIWDTAGQERFRAITSSYYRGALGAM+VYDITR ++ N++ WL ELREFG EDMV+
Sbjct: 300 IKAQIWDTAGQERFRAITSSYYRGALGAMLVYDITRIITFVNIKKWLHELREFGNEDMVI 479
Query: 122 ILVGNKSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQR 181
ILV NKSDL QSREVEKEEGKGFAE EGLCFMETSAL+NLNVE+ FLEMITKI DI +
Sbjct: 480 ILVANKSDLSQSREVEKEEGKGFAEKEGLCFMETSALQNLNVEDAFLEMITKIHDIISHK 659
Query: 182 SLE 184
SLE
Sbjct: 660 SLE 668
>TC88814 homologue to PIR|T06447|T06447 GTP-binding protein - garden pea,
complete
Length = 1183
Score = 234 bits (596), Expect = 2e-62
Identities = 117/210 (55%), Positives = 156/210 (73%)
Frame = +3
Query: 7 DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
D++ DYLFK VLIGDSGVGKSNLLSRF K+EF L+SK TIGVEFA +I+V DK++KAQI
Sbjct: 303 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQI 482
Query: 67 WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
WDTAGQER+RAITS+YYRGA+GA++VYD+TR ++ENV WL ELR+ ++VV+LVGN
Sbjct: 483 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVVMLVGN 662
Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAK 186
K+DL R V E+ FAE E FMETSAL+++NVE F E++T+I + +++LE
Sbjct: 663 KADLRHLRAVSTEDSTAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSKKALEIG 842
Query: 187 VDEKPINVFSGKEIHLVDEVTATKQATCCS 216
D + ++ D+V+A K++ CCS
Sbjct: 843 DDPTALPKGQTIDVGSRDDVSAVKKSGCCS 932
>TC87342 PIR|S41431|S41431 GTP-binding protein ras-like - fava bean,
complete
Length = 995
Score = 233 bits (593), Expect = 6e-62
Identities = 118/211 (55%), Positives = 155/211 (72%)
Frame = +3
Query: 7 DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
D++ DYLFK VLIGDSGVGKSNLLSRF K+EF L+SK TIGVEFA + V K+IKAQI
Sbjct: 93 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSKVIKAQI 272
Query: 67 WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
WDTAGQER+RAITS+YYRGA+GA++VYD+TR +++ENV WL ELR ++VV+LVGN
Sbjct: 273 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELRNHTDSNIVVMLVGN 452
Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAK 186
K+DL V E+GK +AE E L FMETSAL+ NVE F E++T+I I ++++E
Sbjct: 453 KADLRHLVAVSTEDGKSYAEKESLYFMETSALEATNVENAFAEVLTQIYRIVSKKAVEGA 632
Query: 187 VDEKPINVFSGKEIHLVDEVTATKQATCCST 217
+ G++I L ++V+A K+ CCS+
Sbjct: 633 ENGNASVPAKGEKIDLKNDVSALKRVGCCSS 725
>TC77922 homologue to PIR|T06448|T06448 GTP-binding protein - garden pea,
complete
Length = 1182
Score = 228 bits (580), Expect = 2e-60
Identities = 118/211 (55%), Positives = 157/211 (73%), Gaps = 1/211 (0%)
Frame = +2
Query: 7 DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
D+E DYLFK VLIGDSGVGKSNLLSRF ++EF L+SK TIGVEFA ++ V K+IKAQI
Sbjct: 182 DDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLTVDAKVIKAQI 361
Query: 67 WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
WDTAGQER+RAITS+YYRGA+GA++VYD+TRR+++EN WL ELR+ ++VV+L+GN
Sbjct: 362 WDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGN 541
Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAK 186
KSDL V E+GK FAE E L FMETSAL+ NVE F E++++I I ++++EA
Sbjct: 542 KSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKKAVEAG 721
Query: 187 VDEKPINVFS-GKEIHLVDEVTATKQATCCS 216
+V S G+ I++ ++ + K+ CCS
Sbjct: 722 EGGSSSSVPSVGQTINVKEDSSVLKRFGCCS 814
>TC86480 homologue to SP|Q40193|R11C_LOTJA Ras-related protein Rab11C.
{Lotus japonicus}, complete
Length = 1173
Score = 226 bits (576), Expect = 5e-60
Identities = 114/216 (52%), Positives = 154/216 (70%)
Frame = +3
Query: 2 MADAFDEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKL 61
MA D E DYLFK VLIGDSGVGKSN+LSRF ++EF L+SK TIGVEFA ++V K
Sbjct: 195 MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKT 374
Query: 62 IKAQIWDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVV 121
+KAQIWDTAGQER+RAITS+YYRGA+GA++VYDIT+R +++NV WL ELR+ ++V+
Sbjct: 375 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVNRWLRELRDHADSNIVI 554
Query: 122 ILVGNKSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQR 181
++ GNKSDL R V +++G+ AE EGL F+ETSAL+ N+E+ F ++T+I I ++
Sbjct: 555 MMAGNKSDLNHLRAVSEDDGQALAEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKK 734
Query: 182 SLEAKVDEKPINVFSGKEIHLVDEVTATKQATCCST 217
+L A+ G I++ D TK+ CCST
Sbjct: 735 ALAAQEAAGTSLPGQGTTINVADSSANTKRG-CCST 839
>TC87022 homologue to SP|O04486|RB1C_ARATH Ras-related protein Rab11C.
[Mouse-ear cress] {Arabidopsis thaliana}, partial (81%)
Length = 1014
Score = 216 bits (551), Expect = 4e-57
Identities = 110/212 (51%), Positives = 149/212 (69%), Gaps = 1/212 (0%)
Frame = +2
Query: 7 DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
+EE DYLFK VLIGDSGVGKSNLLSRF ++EF L+SK TIGVEFA ++V + +KAQI
Sbjct: 68 EEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQI 247
Query: 67 WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
WDTAGQER+RAITS+YYRGALGA++VYD+T+ ++++NV WL ELR+ ++V++L+GN
Sbjct: 248 WDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFDNVTRWLKELRDHADANIVIMLIGN 427
Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLE-A 185
K+DL R V E+ + +AE EGL F+ETSAL+ NVE+ F + +I I ++SL A
Sbjct: 428 KTDLKHLRAVATEDAQSYAEKEGLSFIETSALEATNVEKAFQTTLGEIYRIISKKSLSTA 607
Query: 186 KVDEKPINVFSGKEIHLVDEVTATKQATCCST 217
N+ GK I + T CC++
Sbjct: 608 NEPAAAANIKEGKTIAIGGSETTNTNKPCCTS 703
>TC86724 homologue to PIR|T06445|T06445 GTP-binding protein - garden pea,
complete
Length = 1037
Score = 207 bits (528), Expect = 2e-54
Identities = 109/216 (50%), Positives = 153/216 (70%), Gaps = 5/216 (2%)
Frame = +3
Query: 7 DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
++ DY+FK VLIGDS VGKS +L+RF+++EF LDSK TIGVEF + + K +KAQI
Sbjct: 204 NQRIDYVFKVVLIGDSAVGKSQILARFSRNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQI 383
Query: 67 WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
WDTAGQER+RA+TS+YYRGA+GAM+VYDIT+R +++++ WL ELR +++V+ILVGN
Sbjct: 384 WDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILVGN 563
Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAK 186
KSDL R+V E+ K FAE EGL F+ETSAL+ NVE F+ ++T+I +I +++L A
Sbjct: 564 KSDLENQRDVPTEDAKEFAEKEGLFFLETSALQATNVEASFMTVLTEIYNIVNKKNLAAD 743
Query: 187 VDEKPINVFS--GKEIHL---VDEVTATKQATCCST 217
+ N S G++I + E+ A K CC +
Sbjct: 744 ESQGNGNSASLLGQKIIIPGPAQEIPA-KSNMCCQS 848
>TC82103 similar to GP|1370144|emb|CAA98178.1 RAB11B {Lotus japonicus},
partial (80%)
Length = 1513
Score = 205 bits (522), Expect = 9e-54
Identities = 106/216 (49%), Positives = 148/216 (68%), Gaps = 6/216 (2%)
Frame = +1
Query: 7 DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
+E+ DY+FK V+IGDS VGK+ +LSRF+K+EF DSK TIGVEF + + K+IKAQI
Sbjct: 196 EEKIDYVFKVVVIGDSAVGKTQILSRFSKNEFCFDSKSTIGVEFQTRTVTINGKVIKAQI 375
Query: 67 WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
WDTAGQER+RA+TS+YYRGALGAM+VYDIT+R S+++V W+ ELR +V++LVGN
Sbjct: 376 WDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVAKWVEELRAHADNSIVIMLVGN 555
Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEA- 185
K DL R V E+ FAE +GL F ETSAL +NVE F++++ +I + +++LE
Sbjct: 556 KGDLVDLRMVPTEDAVEFAEDQGLFFSETSALTGVNVEGAFMKLLEEINSVVSKKALECG 735
Query: 186 -----KVDEKPINVFSGKEIHLVDEVTATKQATCCS 216
+ I+V SG E+ E++ K+ + CS
Sbjct: 736 NVKGIALKGSKIDVISGAEL----EISQIKKLSSCS 831
>TC82393 homologue to PIR|T06447|T06447 GTP-binding protein - garden pea,
partial (77%)
Length = 690
Score = 185 bits (470), Expect(2) = 1e-51
Identities = 89/138 (64%), Positives = 112/138 (80%)
Frame = +3
Query: 7 DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
D++ DYLFK VLIGDSGVGKSNLLSRF K+EF L+SK TIGVEFA +I V DK++KAQI
Sbjct: 183 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIHVDDKIVKAQI 362
Query: 67 WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
WDTAGQER+RAITS+YYRGA+GA++VYD+TR ++ENV WL ELR+ ++V++LVGN
Sbjct: 363 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMLVGN 542
Query: 127 KSDLGQSREVEKEEGKGF 144
K+DL R V ++ K F
Sbjct: 543 KADLRHLRAVSTDDAKAF 596
Score = 35.0 bits (79), Expect(2) = 1e-51
Identities = 19/34 (55%), Positives = 26/34 (75%), Gaps = 1/34 (2%)
Frame = +1
Query: 142 KGFAETEGLCFMETSALKNLNV-EEVFLEMITKI 174
K FAE E FMETSAL++LNV + +F E++T+I
Sbjct: 589 KHFAERENTFFMETSALESLNV*QFLFTEVLTQI 690
>TC88069 homologue to GP|1370154|emb|CAA98183.1 RAB11G {Lotus japonicus},
partial (79%)
Length = 606
Score = 194 bits (493), Expect = 2e-50
Identities = 96/164 (58%), Positives = 127/164 (76%)
Frame = +2
Query: 11 DYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQIWDTA 70
+YLFK V+IGDS VGKSNLLSR+A++EF L SK TIGVEF ++++ K +KAQIWDTA
Sbjct: 101 EYLFKVVIIGDSAVGKSNLLSRYARNEFNLHSKATIGVEFQTQSLEIDSKEVKAQIWDTA 280
Query: 71 GQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGNKSDL 130
GQERFRA+TS+YYRGA+GA++VYDI+RR+++++V WL EL+ + ++LVGNK DL
Sbjct: 281 GQERFRAVTSAYYRGAVGALIVYDISRRTTFDSVGRWLDELKTHCDTTVAMMLVGNKCDL 460
Query: 131 GQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKI 174
R+V EEGK AE+EGL FMETSAL + NV+ F +I +I
Sbjct: 461 DNIRDVSIEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREI 592
>TC81677 homologue to PIR|T06446|T06446 GTP-binding protein - garden pea,
partial (68%)
Length = 667
Score = 191 bits (485), Expect = 2e-49
Identities = 94/147 (63%), Positives = 116/147 (77%)
Frame = +1
Query: 7 DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
DEE DYLFK VLIGDSGVGKSNLLSRF ++EF L+SK TIGVEFA ++++ DKL+KAQI
Sbjct: 97 DEEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVRILDKLVKAQI 276
Query: 67 WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
WDTAGQER+RAITS+YYRGA+GA++VYD TR ++ENV WL ELR+ +V++LVGN
Sbjct: 277 WDTAGQERYRAITSAYYRGAVGALLVYDSTRHVTFENVERWLKELRDHTDAYVVIMLVGN 456
Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFM 153
K+DL + V EE FAE E + FM
Sbjct: 457 KADLKHLQAVSTEEATTFAEKENIYFM 537
>BE205479 homologue to PIR|T06443|T06 GTP-binding protein - garden pea,
partial (77%)
Length = 499
Score = 176 bits (446), Expect = 6e-45
Identities = 91/156 (58%), Positives = 113/156 (72%)
Frame = +2
Query: 19 IGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQIWDTAGQERFRAI 78
IGDS VGKSNLL RFA++EF S+ TIGVEF +++ K +KAQIWDTAGQERFRA+
Sbjct: 2 IGDSAVGKSNLLFRFARNEFDSGSRATIGVEFQTQMVEIDGKEVKAQIWDTAGQERFRAV 181
Query: 79 TSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGNKSDLGQSREVEK 138
TS+YYRGA GA+VVYDI+RR ++E+++ WL EL + +LVGNK DL REV
Sbjct: 182 TSAYYRGAFGALVVYDISRRGTFESIKRWLDELTTQNDSTVARMLVGNKCDLENIREVSI 361
Query: 139 EEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKI 174
EEGK AE EGL FMETSAL + NV+ F +I +I
Sbjct: 362 EEGKALAEEEGLFFMETSALDSTNVQTAFEIVIREI 469
>TC77446 homologue to GP|303750|dbj|BAA02116.1| GTP-binding protein {Pisum
sativum}, complete
Length = 1080
Score = 173 bits (438), Expect = 5e-44
Identities = 96/209 (45%), Positives = 127/209 (59%)
Frame = +3
Query: 9 ECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQIWD 68
E DYLFK +LIGDSGVGKS LL RFA D + TIGV+F ++ K IK QIWD
Sbjct: 126 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWD 305
Query: 69 TAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGNKS 128
TAGQERFR ITSSYYRGA G +VVYD+T + S+ NV+ WL E+ + E++ +LVGNKS
Sbjct: 306 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKS 485
Query: 129 DLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAKVD 188
DL + V E K FA+ G+ FMETSA NVE+ F+ M +I + ++
Sbjct: 486 DLSDKKVVSSETAKAFADEIGIPFMETSAKNASNVEQAFMAMAAEI---------KNRMA 638
Query: 189 EKPINVFSGKEIHLVDEVTATKQATCCST 217
+P N + + + ++A CCS+
Sbjct: 639 SQPANSARPATVQIRGQ-PVNQKAGCCSS 722
>TC82639 homologue to GP|9294115|dbj|BAB01966.1 GTP-binding protein-like
{Arabidopsis thaliana}, partial (69%)
Length = 790
Score = 171 bits (434), Expect = 2e-43
Identities = 78/147 (53%), Positives = 114/147 (77%)
Frame = +2
Query: 6 FDEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQ 65
++++ DY+FK VLIGDS VGK+ LL+RF++++F +DSK TIGVEF + + +K +KAQ
Sbjct: 350 YNQKIDYVFKVVLIGDSAVGKTQLLARFSRNQFNVDSKATIGVEFQTKTLVIDNKTVKAQ 529
Query: 66 IWDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVG 125
IWDTAGQER+RA+TS+YYRGA+GAM+VYD+T+R S++++ WL ELR ++V++L+G
Sbjct: 530 IWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADTNIVIMLIG 709
Query: 126 NKSDLGQSREVEKEEGKGFAETEGLCF 152
NK DLG + V E+ + FA+ E L F
Sbjct: 710 NKCDLGTLKAVPTEDAQEFAQRENLFF 790
>AL375304 homologue to PIR|T06445|T06 GTP-binding protein - garden pea,
partial (64%)
Length = 497
Score = 171 bits (434), Expect = 2e-43
Identities = 79/138 (57%), Positives = 109/138 (78%)
Frame = +2
Query: 7 DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
+++ DY+FK VLIGDS VGKS +L+RFA+++F +DSK TIGVEF + + K +KAQI
Sbjct: 83 NQKIDYVFKVVLIGDSAVGKSQILARFARNDFSMDSKATIGVEFQTRTLVIEHKSVKAQI 262
Query: 67 WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
WDTAGQER+RA+TS+YYRGA+GAM+VYDIT+R S++++ WL ELR +++V+IL+GN
Sbjct: 263 WDTAGQERYRAVTSAYYRGAVGAMLVYDITKRPSFDHIPRWLEELRNHADKNIVIILIGN 442
Query: 127 KSDLGQSREVEKEEGKGF 144
KSDL + R V E+ K F
Sbjct: 443 KSDLEEQRAVPTEDAKEF 496
>TC79203 homologue to PIR|S41430|S41430 GTP-binding protein ras-like (clone
vfa-ypt1) - fava bean, complete
Length = 920
Score = 170 bits (431), Expect = 3e-43
Identities = 88/168 (52%), Positives = 111/168 (65%)
Frame = +1
Query: 9 ECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQIWD 68
E DYLFK +LIGDSGVGKS LL RFA D + TIGV+F ++ K IK QIWD
Sbjct: 217 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIDSYISTIGVDFKIRTVEQDGKTIKLQIWD 396
Query: 69 TAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGNKS 128
TAGQERFR ITSSYYRGA G ++VYD+T S+ NV+ WL E+ + +++ +LVGNK
Sbjct: 397 TAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKC 576
Query: 129 DLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILD 176
DL R V + K FA+ G+ FMETSA + NVE+ F+ M + I D
Sbjct: 577 DLTSERAVSYDTAKAFADEIGIPFMETSAKDSTNVEQAFMAMASSIKD 720
>TC85959 homologue to PIR|S57471|S57471 GTP-binding protein GTP6 - garden
pea, complete
Length = 886
Score = 169 bits (429), Expect = 6e-43
Identities = 86/171 (50%), Positives = 115/171 (66%), Gaps = 1/171 (0%)
Frame = +3
Query: 11 DYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQIWDTA 70
DYL K +LIGDSGVGKS LL RF+ F TIG++F I++ K IK QIWDTA
Sbjct: 108 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 287
Query: 71 GQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGNKSDL 130
GQERFR IT++YYRGA+G ++VYD+T SS+ N+RNW+ + + +++ ILVGNK+D+
Sbjct: 288 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM 467
Query: 131 GQS-REVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQ 180
+S R V +G+ A+ G+ F ETSA NLNVEEVF + I TC+
Sbjct: 468 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQKTCR 620
>TC77453 homologue to GP|303732|dbj|BAA02117.1| GTP-binding protein {Pisum
sativum}, complete
Length = 944
Score = 168 bits (425), Expect = 2e-42
Identities = 89/168 (52%), Positives = 110/168 (64%)
Frame = +1
Query: 9 ECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQIWD 68
E DYLFK +LIGDSGVGKS LL RFA D + TIGV+F ++ K IK QIWD
Sbjct: 133 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIDSYISTIGVDFKIRTVEQDGKTIKLQIWD 312
Query: 69 TAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGNKS 128
TAGQERFR ITSSYYRGA G ++VYD+T S+ NV+ WL E+ + +++ +LVGNKS
Sbjct: 313 TAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKS 492
Query: 129 DLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILD 176
DL +R V + K FA+ G+ FMETSA NVE F+ M I D
Sbjct: 493 DLTANRAVSYDTAKEFADQIGIPFMETSAKDATNVEGAFMAMAAAIKD 636
>TC77618 homologue to PIR|S57478|S57478 GTP-binding protein GTP13 - garden
pea, complete
Length = 1136
Score = 167 bits (424), Expect = 2e-42
Identities = 88/206 (42%), Positives = 128/206 (61%), Gaps = 1/206 (0%)
Frame = +2
Query: 11 DYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQIWDTA 70
DYL K +LIGDSGVGKS LL RF+ F TIG++F I++ K IK QIWDTA
Sbjct: 254 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 433
Query: 71 GQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGNKSDL 130
GQERFR IT++YYRGA+G ++VYD+T +S+ N+RNW+ + + +++ ILVGNK+D+
Sbjct: 434 GQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADM 613
Query: 131 GQS-REVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAKVDE 189
+S R V +G+ A+ G+ F ETSA N+NVEEVF + I QR +
Sbjct: 614 DESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEVFFSIARDIK----QRLADTVSST 781
Query: 190 KPINVFSGKEIHLVDEVTATKQATCC 215
+P ++ ++ + A +++ CC
Sbjct: 782 EPQSIKINQQDQAANGGQAAQKSACC 859
>TC85957 homologue to PIR|S57471|S57471 GTP-binding protein GTP6 - garden
pea, complete
Length = 1148
Score = 166 bits (420), Expect = 6e-42
Identities = 88/208 (42%), Positives = 128/208 (61%), Gaps = 1/208 (0%)
Frame = +3
Query: 11 DYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQIWDTA 70
DYL K +LIGDSGVGKS LL RF+ F TIG++F I++ K IK QIWDTA
Sbjct: 243 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 422
Query: 71 GQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGNKSDL 130
GQERFR IT++YYRGA+G ++VYD+T SS+ N++NW+ + + +++ ILVGNK+D+
Sbjct: 423 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIRNIEQHASDNVNKILVGNKADM 602
Query: 131 GQS-REVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAKVDE 189
+S R V +G+ A+ G+ F ETSA N+NV+EVF + I QR E+
Sbjct: 603 DESKRAVPTSKGQALADEYGIKFFETSAKTNMNVDEVFFSIARDIK----QRLAESDSKT 770
Query: 190 KPINVFSGKEIHLVDEVTATKQATCCST 217
+P + + A++ ++CC +
Sbjct: 771 EPQTLKINQPDQGAGSAQASQTSSCCGS 854
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.135 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,510,931
Number of Sequences: 36976
Number of extensions: 55130
Number of successful extensions: 371
Number of sequences better than 10.0: 114
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of query: 217
length of database: 9,014,727
effective HSP length: 92
effective length of query: 125
effective length of database: 5,612,935
effective search space: 701616875
effective search space used: 701616875
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0042.10