BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0042.1
(635 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG646599 96 5e-20
BG454068 weakly similar to GP|22202804|dbj hypothetical protein~... 70 2e-12
BE943429 67 2e-11
BG453710 weakly similar to GP|21537057|gb| unknown {Arabidopsis ... 61 1e-09
BQ144482 similar to GP|6523547|emb| hydroxyproline-rich glycopro... 55 6e-08
TC82474 53 3e-07
TC86848 similar to GP|10177413|dbj|BAB10544. fibrillarin-like {A... 48 1e-05
TC76523 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - ... 47 2e-05
BQ141909 weakly similar to GP|14253159|emb VMP3 protein {Volvox ... 45 7e-05
TC79934 similar to GP|20259633|gb|AAM14173.1 putative GAR1 prote... 44 2e-04
TC77193 homologue to GP|21593495|gb|AAM65462.1 glycine rich prot... 44 2e-04
TC77194 homologue to GP|21593495|gb|AAM65462.1 glycine rich prot... 43 3e-04
BQ144502 weakly similar to GP|6523547|emb hydroxyproline-rich gl... 42 7e-04
BQ151242 similar to PIR|G86292|G86 hypothetical protein AAF82153... 42 7e-04
AW693426 homologue to GP|23307580|dbj similar to serine/threonin... 42 0.001
TC78850 homologue to GP|10177413|dbj|BAB10544. fibrillarin-like ... 41 0.001
TC85490 similar to GP|18146720|dbj|BAB82426. ribosomal protein S... 40 0.003
BQ144389 weakly similar to GP|21322711|em pherophorin-dz1 protei... 40 0.003
BQ141932 weakly similar to GP|6523547|emb hydroxyproline-rich gl... 40 0.004
BQ144057 similar to GP|1483567|emb| viral proteinase {Pseudorabi... 40 0.004
>BG646599
Length = 711
Score = 95.5 bits (236), Expect = 5e-20
Identities = 65/173 (37%), Positives = 88/173 (50%), Gaps = 3/173 (1%)
Frame = +3
Query: 334 LSRASRRGTAQMGGFSSLLLEWVYEY---LSDRVIIRRADPEYSQDQPRARRWAMSRVGH 390
L S Q+GG+++LL W+YEY L +RV R A E RA RW R G+
Sbjct: 6 LGNGSMMSCKQLGGYATLLQCWIYEYFPTLGNRVENRVACDEPGMGVARAMRWKYPR-GN 182
Query: 391 AGLDERRVMLDELTVDDIIWTPFEDHRAHRPRDPRAMYSRYIRSPFGRVVRRHLPERVLR 450
+D+ R M+D+LT +D+IW PF+ HR P D + S YIR + V +LPER LR
Sbjct: 183 LKVDQIRRMIDDLTPNDVIWCPFDSHRQVIPFDDICLSSGYIR--WCSNVVPYLPERCLR 356
Query: 451 QFGFIQDVPRHPSEIQTSGSLAETADAAFAEFAPHLRPQGIPATYPGEAVEDY 503
QFG+IQ +PR P T E D + A + +YP E + Y
Sbjct: 357 QFGYIQYIPRPPPNFNTFNVDVEWNDCHSS--ANQIIGDAHLTSYPFEVTDTY 509
>BG454068 weakly similar to GP|22202804|dbj hypothetical protein~predicted by
GeneMark.hmm etc. {Oryza sativa (japonica
cultivar-group)}, partial (5%)
Length = 673
Score = 70.5 bits (171), Expect = 2e-12
Identities = 32/60 (53%), Positives = 42/60 (69%)
Frame = +3
Query: 159 LIEQTGLHQLPYCSYPVTDAGLILALVERWHEETSSFHMSFGEMTITLDDVSALLHLPMG 218
+I +GL+ L +Y D GL++A RWH ETSSFH+ GEMTI LDD+S LLH+P+G
Sbjct: 273 VIRASGLYPLLETNYGQVDHGLLIAFSLRWHSETSSFHLPVGEMTIALDDISCLLHIPVG 452
>BE943429
Length = 384
Score = 67.0 bits (162), Expect = 2e-11
Identities = 43/114 (37%), Positives = 61/114 (52%), Gaps = 5/114 (4%)
Frame = +2
Query: 408 IIWTPFEDHRAHRPRDPRAMYSRYIRSPFGRVVRRHLPERVLRQFGFIQDVPRHPSEIQT 467
+IW P+E R P YS +I + ++VR HLPERVLRQ+G++Q VPR P+ I
Sbjct: 23 VIWRPYEHRRDVTPFQDVCWYSGWIMAGKQKMVR-HLPERVLRQYGYVQTVPRPPTTIVP 199
Query: 468 SGSLAETADAAFAEFAPHL-----RPQGIPATYPGEAVEDYMRWYNAVSHRFII 516
AE A AF EF H+ R +P + + Y++W+ VSH I+
Sbjct: 200 LAP-AEVA-TAFFEFVVHVLSQQDRGDPVPEDEWWKHSDGYIKWFYRVSHPLIV 355
>BG453710 weakly similar to GP|21537057|gb| unknown {Arabidopsis thaliana},
partial (6%)
Length = 651
Score = 61.2 bits (147), Expect = 1e-09
Identities = 27/41 (65%), Positives = 32/41 (77%)
Frame = -1
Query: 177 DAGLILALVERWHEETSSFHMSFGEMTITLDDVSALLHLPM 217
D +I A+ ERWH ETSSFH+ GEMTITLDDV LLH+P+
Sbjct: 474 DPSMIRAMCERWHTETSSFHLPMGEMTITLDDVYNLLHIPI 352
>BQ144482 similar to GP|6523547|emb| hydroxyproline-rich glycoprotein DZ-HRGP
{Volvox carteri f. nagariensis}, partial (16%)
Length = 993
Score = 55.5 bits (132), Expect = 6e-08
Identities = 30/64 (46%), Positives = 32/64 (49%)
Frame = -1
Query: 571 GTQGVAFAAVRGARAAGGRGRGDRARGGRGRGGRARGEGAPAEGARGGRARGPRGRRGAG 630
G G A G GG GRG ARG GRGG RG+G G GGR RG + G
Sbjct: 411 GPPGGAGQHSGGTGPGGGPGRGGGARGAGGRGGEGRGQGEAEGGGGGGRGRGAKEGEGRE 232
Query: 631 RGRG 634
RGRG
Sbjct: 231 RGRG 220
Score = 46.6 bits (109), Expect = 3e-05
Identities = 39/96 (40%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Frame = -3
Query: 544 SDAPAE-GTHSRSLTERALD--LIRSNAFIGTQGVAFAAVRGARAAGGRGRGDRARG-GR 599
S P E G+ R RA D R +G G A G AGGRG G R G R
Sbjct: 472 SSPPGEPGSALRGGAMRASDGAARRGRPTLGRDGAGRGAGAGGGGAGGRGPGGRRPGPRR 293
Query: 600 GRGGRARGEGAPAEGARGGRARGPRGRRGAGRGRGE 635
G GG GEG E GG G GRR GRG G+
Sbjct: 292 G*GGGGGGEGEGGERG-GGEGEGEGGRR*KGRGGGK 188
Score = 42.7 bits (99), Expect = 4e-04
Identities = 32/66 (48%), Positives = 34/66 (51%), Gaps = 13/66 (19%)
Frame = -1
Query: 582 GARAAGGRGRGDRARG---GRGRGGRARG--EGAPAE-GARGGRARGPRGRR-------G 628
GAR AGGRG R +G G G GGR RG EG E G GG RG G + G
Sbjct: 342 GARGAGGRGGEGRGQGEAEGGGGGGRGRGAKEGEGRERGRGGGDRRGGGGEKVGAGRLWG 163
Query: 629 AGRGRG 634
AG GRG
Sbjct: 162 AGAGRG 145
Score = 37.4 bits (85), Expect = 0.018
Identities = 30/66 (45%), Positives = 32/66 (48%), Gaps = 14/66 (21%)
Frame = -2
Query: 581 RGARAAGG--RGRGDRARGG----------RGRGGRARGEGAPAEGARGGR--ARGPRGR 626
RG AGG G +R RGG RGRGGR G GA EG GG+ ARG G
Sbjct: 338 RGGPGAGGAKAGAKERLRGGGGGGGGGGRKRGRGGRG-GGGAEIEGEGGGKRWARGDFGG 162
Query: 627 RGAGRG 632
RG G
Sbjct: 161 RGPVAG 144
Score = 32.3 bits (72), Expect = 0.57
Identities = 27/76 (35%), Positives = 29/76 (37%), Gaps = 21/76 (27%)
Frame = -2
Query: 571 GTQGVAFAAVRGARAAGGRGRGDRARGGRGRGG-RARGEGAPAEGARG---GRA------ 620
G + A +RG GG G R RGGRG GG GEG ARG GR
Sbjct: 317 GAKAGAKERLRGGGGGGGGGGRKRGRGGRGGGGAEIEGEGGGKRWARGDFGGRGPVAGPR 138
Query: 621 -----------RGPRG 625
RGP G
Sbjct: 137 RRARPPAGPSPRGPPG 90
Score = 32.0 bits (71), Expect = 0.74
Identities = 20/52 (38%), Positives = 22/52 (41%), Gaps = 2/52 (3%)
Frame = -3
Query: 582 GARAAGGRGRGDRARGGRGRGG--RARGEGAPAEGARGGRARGPRGRRGAGR 631
G GG G G+ R +GRGG RG G GRA P R G R
Sbjct: 259 GGERGGGEGEGEGGRR*KGRGGGKGGRGATLGGGGRSRGRAAAPGPRPGPPR 104
Score = 28.9 bits (63), Expect = 6.3
Identities = 19/33 (57%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 586 AGGR--GRGDRARGGRGRGGRARGEGAPAEGAR 616
AGGR GR RAR G GRGG A APA +R
Sbjct: 80 AGGRRGGRAGRARPGAGRGG-AAPRPAPAPQSR 175
>TC82474
Length = 992
Score = 53.1 bits (126), Expect = 3e-07
Identities = 29/93 (31%), Positives = 52/93 (55%)
Frame = -2
Query: 370 DPEYSQDQPRARRWAMSRVGHAGLDERRVMLDELTVDDIIWTPFEDHRAHRPRDPRAMYS 429
DP+Y++D+P A R++++ +GH + LD + VDD+ + ++ H P D + +
Sbjct: 892 DPKYTEDRPHATRFSLA-MGHKSPNNYMTFLDRVEVDDVSFNQYDFHHQTCPFDDIS*FF 716
Query: 430 RYIRSPFGRVVRRHLPERVLRQFGFIQDVPRHP 462
R+I ++ HL E V++ +G IQ RHP
Sbjct: 715 RWIECD-RKMNYHHLLELVMK*YGHIQSTLRHP 620
>TC86848 similar to GP|10177413|dbj|BAB10544. fibrillarin-like {Arabidopsis
thaliana}, partial (92%)
Length = 1250
Score = 47.8 bits (112), Expect = 1e-05
Identities = 27/55 (49%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 582 GARAAGGRG--RGDRARGGRGRGGRARGEGAPAEGARGGRARGPRGRRGAGRGRG 634
G GGRG RG R G G GGR G P + GGR G RG RG GRG G
Sbjct: 84 GGGFRGGRGGDRGGRGGGRGGFGGRGGDRGTPFKARGGGRGGGGRGGRGGGRGGG 248
Score = 40.0 bits (92), Expect = 0.003
Identities = 37/88 (42%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Frame = +3
Query: 555 SLTERALDLIRSNAFIG-TQGVAFAAVRGARAA--GGRGRGDRARGGRG--RG--GRARG 607
SLT ++L + + A +G RG R GGRG G GGRG RG +ARG
Sbjct: 15 SLTHQSLRNLSTTAMAPPVRGRGGGGFRGGRGGDRGGRGGGRGGFGGRGGDRGTPFKARG 194
Query: 608 EGAPAEGARGGRARGPR-GRRGAGRGRG 634
G RGG RG R G RG GRG G
Sbjct: 195 ------GGRGGGGRGGRGGGRGGGRGGG 260
Score = 33.9 bits (76), Expect = 0.20
Identities = 23/53 (43%), Positives = 24/53 (44%)
Frame = +3
Query: 582 GARAAGGRGRGDRARGGRGRGGRARGEGAPAEGARGGRARGPRGRRGAGRGRG 634
G GGRG GDR + RGG G G RGGR G G RG G G
Sbjct: 135 GRGGFGGRG-GDRGTPFKARGGGRGG------GGRGGRGGGRGGGRGGGMKGG 272
Score = 33.5 bits (75), Expect = 0.26
Identities = 18/37 (48%), Positives = 20/37 (53%)
Frame = +3
Query: 571 GTQGVAFAAVRGARAAGGRGRGDRARGGRGRGGRARG 607
G +G F A G R GGRG RGG GRGG +G
Sbjct: 162 GDRGTPFKARGGGRGGGGRGGRGGGRGG-GRGGGMKG 269
>TC76523 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - alfalfa,
partial (69%)
Length = 1615
Score = 47.4 bits (111), Expect = 2e-05
Identities = 34/81 (41%), Positives = 41/81 (49%), Gaps = 5/81 (6%)
Frame = +3
Query: 559 RALDLIRSNAFIGTQGVAFAAVRGARAAGGRGRGDRARGGR-GRGGRARG----EGAPAE 613
+AL+L S V A R ++ +GGRG G R+ GGR G GGR+ G G
Sbjct: 1029 KALELHESELDGYQLSVDEAKPRDSQGSGGRGGGGRSGGGRFGGGGRSGGFGGRSGGRGG 1208
Query: 614 GARGGRARGPRGRRGAGRGRG 634
G GGR G RG RG GRG
Sbjct: 1209 GRFGGRDSGGRGGRGGRGGRG 1271
>BQ141909 weakly similar to GP|14253159|emb VMP3 protein {Volvox carteri f.
nagariensis}, partial (13%)
Length = 1223
Score = 45.4 bits (106), Expect = 7e-05
Identities = 31/76 (40%), Positives = 33/76 (42%), Gaps = 11/76 (14%)
Frame = +2
Query: 571 GTQGVAFAAVRGARAAGGRGRGDRARGGRGRGGRARG-EGAPAEGARGGRARGP------ 623
G +G GA RGRG R GGRG G R RG +G RG R RG
Sbjct: 179 GKRGEGGEGGGGAEGGSERGRGRRGGGGRGGGRRGRGKKGGGGTKGRGKRERGGGTEGGG 358
Query: 624 ----RGRRGAGRGRGE 635
GR G GR RGE
Sbjct: 359 KGKIEGRNGTGRRRGE 406
Score = 42.4 bits (98), Expect = 6e-04
Identities = 27/67 (40%), Positives = 33/67 (48%), Gaps = 2/67 (2%)
Frame = +2
Query: 571 GTQGVAFAAVRGARAAGGRGRGDRARGGRGRGGRARGEGAPAEGARGGRARGPRGRRGAG 630
G +G +R G RG G GG GG RG G G RGG RG RG++G G
Sbjct: 131 GRRGRGSGKMRRRGERGKRGEGGEG-GGGAEGGSERGRGRRGGGGRGGGRRG-RGKKGGG 304
Query: 631 --RGRGE 635
+GRG+
Sbjct: 305 GTKGRGK 325
Score = 35.0 bits (79), Expect = 0.088
Identities = 28/62 (45%), Positives = 29/62 (46%), Gaps = 14/62 (22%)
Frame = +2
Query: 588 GRGRGDRARGGRGRGG-RARGE-------GAPAEGARGGRARGPRGRRGAG------RGR 633
GR R GRG G R RGE G GA GG RG RGRRG G RGR
Sbjct: 110 GRNTTKEGRRGRGSGKMRRRGERGKRGEGGEGGGGAEGGSERG-RGRRGGGGRGGGRRGR 286
Query: 634 GE 635
G+
Sbjct: 287 GK 292
Score = 32.0 bits (71), Expect = 0.74
Identities = 27/69 (39%), Positives = 28/69 (40%), Gaps = 11/69 (15%)
Frame = +3
Query: 576 AFAAVRGARAAGGRGRGDRARGGRGR-GGRARGEGAPAEGAR------GGRARGPRGRR- 627
A +RG G D R GR R G RAR G EGAR G R R R
Sbjct: 819 AIDIMRGRAGEE*EGERDEERDGRRREGARARRRGTAQEGARHDAESSGANNRSVRSAR* 998
Query: 628 ---GAGRGR 633
GA RGR
Sbjct: 999 ERGGAARGR 1025
Score = 28.9 bits (63), Expect = 6.3
Identities = 24/67 (35%), Positives = 27/67 (39%), Gaps = 14/67 (20%)
Frame = +1
Query: 582 GARAAGGRGRGDRARGGRGRGGRARGEGAPAEGARGGR------------ARGPR--GRR 627
G + RGR R+ G G R RG+G RG ARG R GRR
Sbjct: 838 GEQVRSERGRETRSETGGGGRERGRGDGERRRRERGMTRSRVERITEV*GARGEREVGRR 1017
Query: 628 GAGRGRG 634
GR RG
Sbjct: 1018EDGRERG 1038
Score = 28.9 bits (63), Expect = 6.3
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +1
Query: 580 VRGARAAGGRGRGDRARGGRGRGGRARG---EGAPAEGARGGRA--RGPRGRR 627
+R RAA GRGRG R G +GR G AR E E + GR G RGR+
Sbjct: 526 IRRIRAARGRGRG-RKGGRQGRRGIARSVETEEQ*NETQKEGRTGMPGTRGRK 681
>TC79934 similar to GP|20259633|gb|AAM14173.1 putative GAR1 protein
{Arabidopsis thaliana}, partial (87%)
Length = 814
Score = 43.5 bits (101), Expect = 2e-04
Identities = 28/49 (57%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 587 GGRGRGDRARGGRGRGGRARGEGAPAEGARGGRARGPRGRRGAG-RGRG 634
GGRG G RGG GG RG G P RGGR PRG RG G RGRG
Sbjct: 520 GGRGGGGFGRGGGRGGGGFRGRGPP----RGGRG-PPRGGRGGGFRGRG 651
Score = 37.4 bits (85), Expect = 0.018
Identities = 22/49 (44%), Positives = 23/49 (46%)
Frame = +1
Query: 586 AGGRGRGDRARGGRGRGGRARGEGAPAEGARGGRARGPRGRRGAGRGRG 634
A G GRG RGGR G R +G G GGR G RG G R G
Sbjct: 64 ARGGGRGGGFRGGRDGGFRGGRDGGGFRGRGGGRFGGGRGGGGGFRDEG 210
Score = 36.6 bits (83), Expect = 0.030
Identities = 23/45 (51%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 571 GTQGVAFAAVRGARAAGG-RGRGD-RARGGRGRGGRARGEGAPAE 613
G +G RG R GG RGRG R GGRG GG R EG P+E
Sbjct: 88 GFRGGRDGGFRGGRDGGGFRGRGGGRFGGGRGGGGGFRDEGPPSE 222
Score = 32.3 bits (72), Expect = 0.57
Identities = 22/45 (48%), Positives = 22/45 (48%)
Frame = +1
Query: 582 GARAAGGRGRGDRARGGRGRGGRARGEGAPAEGARGGRARGPRGR 626
G GGRG G G RGRG G G P RGGR G RGR
Sbjct: 538 GFGRGGGRGGG----GFRGRGPPRGGRGPP----RGGRGGGFRGR 648
>TC77193 homologue to GP|21593495|gb|AAM65462.1 glycine rich protein-like
{Arabidopsis thaliana}, partial (85%)
Length = 989
Score = 43.5 bits (101), Expect = 2e-04
Identities = 27/55 (49%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Frame = +2
Query: 588 GRGRG-DRARGGRGRGGRARGEGAPAEGARGGRARG-------PRGRRGAGRGRG 634
GRGRG + A G GR + G G GARG RG P G RGAGRGRG
Sbjct: 392 GRGRGREDAAGAGGRQTKGTGRGFDDGGARGAGGRGRASQGGKPGGSRGAGRGRG 556
>TC77194 homologue to GP|21593495|gb|AAM65462.1 glycine rich protein-like
{Arabidopsis thaliana}, partial (96%)
Length = 700
Score = 43.1 bits (100), Expect = 3e-04
Identities = 27/55 (49%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Frame = +3
Query: 588 GRGRG-DRARGGRGRGGRARGEGAPAEGARGGRARG-------PRGRRGAGRGRG 634
GRGRG + A G GR + G G GARG RG P G RGAGRGRG
Sbjct: 447 GRGRGREDAAGAGGRQTKGPGRGFDDGGARGAGGRGRTSQGGKPGGSRGAGRGRG 611
>BQ144502 weakly similar to GP|6523547|emb hydroxyproline-rich glycoprotein
DZ-HRGP {Volvox carteri f. nagariensis}, partial (39%)
Length = 1358
Score = 42.0 bits (97), Expect = 7e-04
Identities = 33/78 (42%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Frame = +1
Query: 570 IGTQGVAFAAVRGARAAGGRGRGDRARGG--------RGRGGRARGEG-----APAEGAR 616
+G G A V G A G GR RARGG GG RG G P GA
Sbjct: 112 VGAGGAAAGGVGGGAGAEG-GRRRRARGGGAVAGGMPSAAGGLLRGVGPGAGGGPGPGAA 288
Query: 617 GGRARGPRGRRGAGRGRG 634
GGR G G RG GRG G
Sbjct: 289 GGRVGG--GGRGRGRGSG 336
Score = 39.7 bits (91), Expect = 0.004
Identities = 27/55 (49%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 582 GARAAGGRGRGDRAR--GGRGRGGRARGEGAPAEGARGGRARGPRGRRGAGRGRG 634
G AAGG G G R GG GRGG RG G RGG GP G GR RG
Sbjct: 56 GGLAAGGGGGGLRLVRVGGWGRGGPLRGGWGGGRGPRGGGGGGP---GGGGRWRG 211
Score = 36.2 bits (82), Expect = 0.039
Identities = 28/56 (50%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 582 GARAAGGRGRGDRARGGRGRGGRARGEGAPAEGARGGRARGPRGRRGAG--RGRGE 635
G RA G RGRG GG GR G RG GA GAR G G GAG G GE
Sbjct: 401 GGRAGGRRGRGRWGAGG-GRAGGRRGGGA-GGGARPRIVEGLWGGTGAGGLAGGGE 562
Score = 36.2 bits (82), Expect = 0.039
Identities = 22/53 (41%), Positives = 23/53 (42%), Gaps = 9/53 (16%)
Frame = +3
Query: 592 GDRARGGRGRGGRARGEGAPAEGARGGRARGPRGR---------RGAGRGRGE 635
GD GG G G G P GAR G A G RG G GRGRG+
Sbjct: 387 GDALTGGARVAGGVGGAGGPEGGARAGAAGGGRGGGRGLGLWRGSGGGRGRGD 545
Score = 35.4 bits (80), Expect = 0.067
Identities = 29/90 (32%), Positives = 32/90 (35%), Gaps = 37/90 (41%)
Frame = +3
Query: 582 GARAAGGRGRGDRARGGRGRG------------------------------GRARGEGAP 611
GAR+ GG G G R G+G G G G G P
Sbjct: 267 GARSRGGGGPGGWGRAGQGTGLWTPVCRPWGVS*PWPGHHGDALTGGARVAGGVGGAGGP 446
Query: 612 AEGARGGRARGPRGR-------RGAGRGRG 634
GAR G A G RG RG+G GRG
Sbjct: 447 EGGARAGAAGGGRGGGRGLGLWRGSGGGRG 536
Score = 35.0 bits (79), Expect = 0.088
Identities = 27/56 (48%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = +1
Query: 581 RGARAAGGRGRGDRARGGRGRG---GRARGE--GAPAEGARGGRARGPRGRRGAGR 631
RG R+ G G G RGG RG G ARG GA A+GA GG A G GR R
Sbjct: 637 RGTRSHSGGGGG--GRGGGRRGVAAGCARGMLCGARAQGAPGGVALGGAGRADGAR 798
Score = 34.3 bits (77), Expect = 0.15
Identities = 25/56 (44%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 581 RGARA--AGGRGRGDRARGGRGRGGRARGEGAPAEGARGGRARGPRGRRGAGRGRG 634
RGAR AG G R RG RGR R G G A GG G G G GRG
Sbjct: 400 RGARGWPAGSGALGGR-RGARGRAPRGGGGGGGAASDCGGALGGDGGGGTGGGGRG 564
Score = 33.9 bits (76), Expect = 0.20
Identities = 24/64 (37%), Positives = 25/64 (38%), Gaps = 5/64 (7%)
Frame = +1
Query: 576 AFAAVRGARAAGGRGRGDRARGGRGRGGRARGEGAPAEGARGGRARGPRG-----RRGAG 630
A RGAR RG G GG G+G G GG RG RG RG
Sbjct: 433 ALGGRRGARGRAPRGGGGGGGAASDCGGALGGDGG---GGTGGGGRGGRGYVATRTRGTS 603
Query: 631 RGRG 634
GRG
Sbjct: 604 AGRG 615
Score = 33.5 bits (75), Expect = 0.26
Identities = 30/67 (44%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Frame = +1
Query: 576 AFAAVRGARAAGGR-----GRGDRARGGRGRGGRARGEGAPAEG---ARGGRARGPRGRR 627
A A G AGG G G A GGR R RARG GA A G A GG RG
Sbjct: 88 AQAGACGGVGAGGAAAGGVGGGAGAEGGRRR--RARGGGAVAGGMPSAAGGLLRGVGPGA 261
Query: 628 GAGRGRG 634
G G G G
Sbjct: 262 GGGPGPG 282
Score = 33.1 bits (74), Expect = 0.33
Identities = 34/75 (45%), Positives = 34/75 (45%), Gaps = 22/75 (29%)
Frame = +1
Query: 582 GARAAGGR-GRGDRARGGRGRGGR--ARGE---------GAPAEGARG--------GRAR 621
G AAGGR G G R R GRG G R A GE P GARG G R
Sbjct: 274 GPGAAGGRVGGGGRGR-GRGSGPRCAALGEFPDLGPGTTATP*RGARGWPAGSGALGGRR 450
Query: 622 GPRGR--RGAGRGRG 634
G RGR RG G G G
Sbjct: 451 GARGRAPRGGGGGGG 495
Score = 32.7 bits (73), Expect = 0.44
Identities = 36/106 (33%), Positives = 41/106 (37%), Gaps = 20/106 (18%)
Frame = +3
Query: 547 PAEGTHSRSLTERALDLIRSNAFIGTQGVAFAAVRGARAAGGRGRG--DRARGGRGRG-- 602
P G H +LT A G +G A A G GGRG G + GGRGRG
Sbjct: 369 PWPGHHGDALTGGARVAGGVGGAGGPEGGARAGAAGGGRGGGRGLGLWRGSGGGRGRGDW 548
Query: 603 -GRARGEGAPAEGARGGRAR--------GPR-------GRRGAGRG 632
G AR G ++ R G R GRRGAG G
Sbjct: 549 RGGARWAGVCSDSDERDERRAGLPTNFLGKRDAFPFRGGRRGAGGG 686
Score = 31.2 bits (69), Expect = 1.3
Identities = 20/55 (36%), Positives = 21/55 (37%), Gaps = 4/55 (7%)
Frame = +1
Query: 582 GARAAGGRGRGDRARGGRGRGGRARGEGAP----AEGARGGRARGPRGRRGAGRG 632
G GG GRG R G + G G P A G R G GR G RG
Sbjct: 532 GGGGTGGGGRGGRGYVATRTRGTSAGRGCPPIFLARGTRSHSGGGGGGRGGGRRG 696
Score = 30.8 bits (68), Expect = 1.7
Identities = 21/55 (38%), Positives = 22/55 (39%), Gaps = 9/55 (16%)
Frame = +1
Query: 589 RGRGDRARGGRGRGGR---------ARGEGAPAEGARGGRARGPRGRRGAGRGRG 634
+G G RG G GGR G G A G GG A GRR RG G
Sbjct: 34 KGGGRGGRGAGGGGGRWGAQAGACGGVGAGGAAAGGVGGGAGAEGGRRRRARGGG 198
Score = 30.4 bits (67), Expect = 2.2
Identities = 22/51 (43%), Positives = 22/51 (43%), Gaps = 12/51 (23%)
Frame = +1
Query: 587 GGRG-RGDRARGGR-----------GRGGRARGEGAPAEGARGGRARGPRG 625
GGRG RG GGR G GG A G GA GGR R RG
Sbjct: 40 GGRGGRGAGGGGGRWGAQAGACGGVGAGGAAAGGVGGGAGAEGGRRRRARG 192
Score = 30.4 bits (67), Expect = 2.2
Identities = 25/57 (43%), Positives = 26/57 (44%), Gaps = 1/57 (1%)
Frame = +3
Query: 580 VRGARAAGGRGRGDRARG-GRGRGGRARGEGAPAEGARGGRARGPRGRRGAGRGRGE 635
VR A AGG G G AR GR R R G AR RA PR R + RGE
Sbjct: 1098 VRNAA*AGGAGAGCGAREYGR---SRMRARGRCVSRARRARAPTPRRRSVSRAARGE 1259
Score = 30.4 bits (67), Expect = 2.2
Identities = 26/75 (34%), Positives = 29/75 (38%), Gaps = 13/75 (17%)
Frame = +3
Query: 571 GTQGVAFAAVRGARAAGGR-GRGDRARGGR------------GRGGRARGEGAPAEGARG 617
G G + V G GGR G G GGR G GG A G A+G+
Sbjct: 75 GEVGGSGWCVWGGGGGGGRCGGGGGGGGGRGGAEAAGPGGGGGGGGDALGRRRLAKGSGA 254
Query: 618 GRARGPRGRRGAGRG 632
G G R R G G G
Sbjct: 255 GGGGGARSRGGGGPG 299
Score = 29.3 bits (64), Expect = 4.8
Identities = 31/102 (30%), Positives = 37/102 (35%), Gaps = 41/102 (40%)
Frame = +1
Query: 571 GTQGVAFAAVRGARAAGGRG-------RGDRARGGRGRGGR------------------A 605
G G + A R + GRG RG R+ G G GGR A
Sbjct: 556 GRGGRGYVATRTRGTSAGRGCPPIFLARGTRSHSGGGGGGRGGGRRGVAAGCARGMLCGA 735
Query: 606 RGEGAP----------AEGARGGRA------RGPRGRRGAGR 631
R +GAP A+GAR RA R G RG+ R
Sbjct: 736 RAQGAPGGVALGGAGRADGARSTRAHDRAA*RRDLGGRGSAR 861
>BQ151242 similar to PIR|G86292|G86 hypothetical protein AAF82153.1
[imported] - Arabidopsis thaliana, partial (5%)
Length = 1371
Score = 42.0 bits (97), Expect = 7e-04
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = +2
Query: 588 GRGRGDRARGGRGRGGRARGEGAPAEGARGGRARGPRGRRGA 629
G+G + RG G GGR RG+G G RGG +G R GA
Sbjct: 104 GKGGNKKGRGSEGAGGRERGKGGGGGGERGGGQKGRRKEEGA 229
Score = 39.7 bits (91), Expect = 0.004
Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 584 RAAGGRGR-GDRARGGRGRGGRARGEGAPAEGARG--GRARGPRGRRGAGRGR 633
R G R R G+R G G GGR + E RG GR RGPR +G G G+
Sbjct: 123 RGEGARAREGERGERGEGGGGRGAEDKRGEEKRRGQRGRQRGPRKEKGRGEGK 281
Score = 37.7 bits (86), Expect = 0.014
Identities = 23/55 (41%), Positives = 28/55 (50%)
Frame = +2
Query: 581 RGARAAGGRGRGDRARGGRGRGGRARGEGAPAEGARGGRARGPRGRRGAGRGRGE 635
RG+ AGGR RG GG RGG +G EGA G R P+ R+ G G +
Sbjct: 128 RGSEGAGGRERGKGGGGGGERGGGQKGR-RKEEGAEGAAER-PKERKREGGGEAK 286
Score = 37.7 bits (86), Expect = 0.014
Identities = 20/47 (42%), Positives = 25/47 (52%)
Frame = +1
Query: 582 GARAAGGRGRGDRARGGRGRGGRARGEGAPAEGARGGRARGPRGRRG 628
G GG G G R +G + RGG RG G A+G + G RG + R G
Sbjct: 160 GKGGRGGGGEGRRTKGEKKRGG-GRGGGREAQGKKKGGGRGSKTRAG 297
Score = 36.6 bits (83), Expect = 0.030
Identities = 20/54 (37%), Positives = 27/54 (49%)
Frame = +1
Query: 581 RGARAAGGRGRGDRARGGRGRGGRARGEGAPAEGARGGRARGPRGRRGAGRGRG 634
+ + GG G+R RG RG G+G G G R +G + +RG GRG G
Sbjct: 91 KAKKRQGGEQEGERERG---RGREREGKGGRGGGGEGRRTKGEK-KRGGGRGGG 240
Score = 36.2 bits (82), Expect = 0.039
Identities = 21/45 (46%), Positives = 25/45 (54%), Gaps = 2/45 (4%)
Frame = +3
Query: 593 DRARGG--RGRGGRARGEGAPAEGARGGRARGPRGRRGAGRGRGE 635
+ ARGG RG G RAR EG E GG RG +RG + RG+
Sbjct: 99 EEARGGTRRGEGARAR-EGERGERGEGGGGRGAEDKRGEEKRRGQ 230
Score = 33.9 bits (76), Expect = 0.20
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +3
Query: 581 RGARAAGGRGRGDRARGG--RGRGGRARGEGAPAEGARGGRARGPRGRRGAGRGRG 634
RG R GG GRG + G + RG R R G E RG G++ GRG G
Sbjct: 156 RGERGEGGGGRGAEDKRGEEKRRGQRGRQRGPRKEKGRG------EGKQNKGRGSG 305
Score = 31.2 bits (69), Expect = 1.3
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 17/72 (23%)
Frame = +2
Query: 581 RGARAAGGRGRGD-----------------RARGGRGRGGRARGEGAPAEGARGGRARGP 623
RG+R GG GRG+ + R G+G + RG +EGA GGR RG
Sbjct: 5 RGSRERGG-GRGESLGRKKKKKKKFFPKTQKRRRGKGGNKKGRG----SEGA-GGRERGK 166
Query: 624 RGRRGAGRGRGE 635
G G RG G+
Sbjct: 167 GGGGGGERGGGQ 202
Score = 30.0 bits (66), Expect = 2.8
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Frame = +1
Query: 584 RAAGGRGRGDRARG---GRGRGGRARGEGA------PAEGARGGRARGPRGRRGAGRGRG 634
+ GGRG G A+G G GRG + R GA E R R P R G RG
Sbjct: 214 KRGGGRGGGREAQGKKKGGGRGSKTRAGGAGQHTQPTPEKTTTARKRKPAPRGGKREERG 393
>AW693426 homologue to GP|23307580|dbj similar to serine/threonine
phosphatase PP7 {Oryza sativa (japonica
cultivar-group)}, partial (2%)
Length = 209
Score = 41.6 bits (96), Expect = 0.001
Identities = 25/69 (36%), Positives = 36/69 (51%)
Frame = +1
Query: 284 WLVNQLGATLFASKSGGYHTTVYWIGMLEDLGRVCEYAWGAIALATLYDQLSRASRRGTA 343
+L+ +G TLF+ KS + V ++ DL YAWG ALA LYD L AS
Sbjct: 1 FLLCLVGCTLFSDKST-FVVNVAYLEFFRDLDSCGGYAWGVAALAHLYDNLRYASFHHMK 177
Query: 344 QMGGFSSLL 352
+ G+ +L+
Sbjct: 178 SISGYLTLI 204
>TC78850 homologue to GP|10177413|dbj|BAB10544. fibrillarin-like
{Arabidopsis thaliana}, partial (87%)
Length = 1177
Score = 41.2 bits (95), Expect = 0.001
Identities = 31/63 (49%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Frame = +3
Query: 578 AAVRGARAAGGRGRGDRAR----GGRGRGGRARGEGAPAEGARG-GRARGPRGR---RGA 629
A RG GGRG GDR GGRG GG G+ P G RG G RG RG RG
Sbjct: 51 APPRGRGGFGGRG-GDRGGRGGGGGRGFGGGRGGDFKPRGGGRGFGGGRGARGGGRGRGG 227
Query: 630 GRG 632
GRG
Sbjct: 228 GRG 236
Score = 30.8 bits (68), Expect = 1.7
Identities = 21/46 (45%), Positives = 23/46 (49%), Gaps = 3/46 (6%)
Frame = +3
Query: 582 GARAAGGRGRGDRARGG-RGRGGR--ARGEGAPAEGARGGRARGPR 624
G GGRG + RGG RG GG ARG G G RGG G +
Sbjct: 120 GRGFGGGRGGDFKPRGGGRGFGGGRGARGGGRGRGGGRGGMKGGSK 257
Score = 30.8 bits (68), Expect = 1.7
Identities = 21/51 (41%), Positives = 22/51 (42%), Gaps = 3/51 (5%)
Frame = +3
Query: 571 GTQGVAFAAVRGAR---AAGGRGRGDRARGGRGRGGRARGEGAPAEGARGG 618
G G F RG GGRG G GGRG G RG G G +GG
Sbjct: 111 GGGGRGFGGGRGGDFKPRGGGRGFG----GGRGARGGGRGRGGGRGGMKGG 251
>TC85490 similar to GP|18146720|dbj|BAB82426. ribosomal protein S2
{Arabidopsis thaliana}, partial (89%)
Length = 1252
Score = 40.0 bits (92), Expect = 0.003
Identities = 22/36 (61%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = +1
Query: 582 GARAAGGRGRGDRARGG----RGRGGRARGEGAPAE 613
G RA GRG GDR RGG RGRGGR RG G E
Sbjct: 79 GDRAGFGRGFGDRGRGGRGGDRGRGGRRRGAGRREE 186
>BQ144389 weakly similar to GP|21322711|em pherophorin-dz1 protein {Volvox
carteri f. nagariensis}, partial (4%)
Length = 1283
Score = 40.0 bits (92), Expect = 0.003
Identities = 27/57 (47%), Positives = 28/57 (48%), Gaps = 3/57 (5%)
Frame = +1
Query: 580 VRGARAAGGRGRGDR-ARGGRGRGGRARGEGAPAEGARGGRAR--GPRGRRGAGRGR 633
V G A GRGRG R R + G A G G GA G R G G RGAGRGR
Sbjct: 130 VPGIFGASGRGRGQGDGRWRRRQAGEAEGRGGTEIGAGRGERRCVGEAGGRGAGRGR 300
Score = 28.9 bits (63), Expect = 6.3
Identities = 20/44 (45%), Positives = 22/44 (49%)
Frame = +1
Query: 592 GDRARGGRGRGGRARGEGAPAEGARGGRARGPRGRRGAGRGRGE 635
G RG RG GGR G G G RG G G G GRG+G+
Sbjct: 52 GRPCRGVRG-GGREVGGGV-RRGFRGWPVPGIFGASGRGRGQGD 177
>BQ141932 weakly similar to GP|6523547|emb hydroxyproline-rich glycoprotein
DZ-HRGP {Volvox carteri f. nagariensis}, partial (30%)
Length = 1338
Score = 39.7 bits (91), Expect = 0.004
Identities = 28/62 (45%), Positives = 32/62 (51%), Gaps = 13/62 (20%)
Frame = +3
Query: 582 GARAAGGRGRG-------DRARGGRGR----GGRARGE-GAPAEGARGGRAR-GPRGRRG 628
G GGRGRG +R RG G GGR GE G G RGG +R G +GRRG
Sbjct: 174 GGGVGGGRGRGRAG*GEEERGRGVGGERRELGGRMEGEWGGGGGGRRGGESRNGYKGRRG 353
Query: 629 AG 630
+G
Sbjct: 354 SG 359
Score = 38.9 bits (89), Expect = 0.006
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +3
Query: 567 NAFIGTQGVAFAAVRGARAA---GGRGRGDRARGGRGRGGRARGE-GAPAEGARGGR 619
N + G +G A G R + G RG G R+ GG GGRA+ G A+G GGR
Sbjct: 330 NGYKGRRGSGTADAAGGRGSMTVGDRGGGGRSEGGGAEGGRAKARVGGGADGMGGGR 500
Score = 35.4 bits (80), Expect = 0.067
Identities = 26/51 (50%), Positives = 28/51 (53%)
Frame = +3
Query: 583 ARAAGGRGRGDRARGGRGRGGRARGEGAPAEGARGGRARGPRGRRGAGRGR 633
A AAGGRG G RG GGR+ G G AEG R +AR G G G GR
Sbjct: 363 ADAAGGRG--SMTVGDRGGGGRSEGGG--AEGGR-AKARVGGGADGMGGGR 500
Score = 34.3 bits (77), Expect = 0.15
Identities = 31/85 (36%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Frame = +3
Query: 561 LDLIRSNAFI----GTQGVAFAAVRGARAAGGRGRGDRARGGRGRGGRARGE---GAPAE 613
L++I+++++ G A A + AGG G G GGRGRG GE G
Sbjct: 75 LNMIKTSSYFYLLSGVYPAAGA*IGVVVGAGGGGGG--VGGGRGRGRAG*GEEERGRGVG 248
Query: 614 GAR---GGRARGPRGRRGAGRGRGE 635
G R GGR G G G GR GE
Sbjct: 249 GERRELGGRMEGEWGGGGGGRRGGE 323
Score = 33.9 bits (76), Expect = 0.20
Identities = 20/41 (48%), Positives = 22/41 (52%), Gaps = 2/41 (4%)
Frame = +2
Query: 581 RGARAAGGRGRG--DRARGGRGRGGRARGEGAPAEGARGGR 619
RGARA GGRGR D RG G +R G +G GGR
Sbjct: 1205 RGARAGGGRGRN*PDVCRGRVRTRGESRLIGRRVDGCNGGR 1327
Score = 32.3 bits (72), Expect = 0.57
Identities = 25/60 (41%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Frame = +3
Query: 584 RAAGGR------GRGDRARGGRGRGG--RARGEG-APAEGARGGRARGPRGRRGAGRGRG 634
R GGR G G RGG R G RG G A A G RG G RG G G G
Sbjct: 258 RELGGRMEGEWGGGGGGRRGGESRNGYKGRRGSGTADAAGGRGSMTVGDRGGGGRSEGGG 437
Score = 32.0 bits (71), Expect = 0.74
Identities = 29/69 (42%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Frame = +1
Query: 571 GTQGVAFAAVRGAR----AAGGRGR--GDRARGGRGRGGRARGEGAPAEGARGGRARGPR 624
G G VRG R A GGR G RG G GG G G PA G +GG
Sbjct: 187 GGGGGGGGLVRGRRKEEGAWGGRDESWGGGWRGSGGGGGGDGGGGNPAMGTKGGGGVELP 366
Query: 625 GRRGAGRGR 633
RRG G GR
Sbjct: 367 MRRG-GEGR 390
Score = 31.2 bits (69), Expect = 1.3
Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Frame = +3
Query: 582 GARAAGGRGRGDRARGGRGR---GGRARGEGAPAEG-----ARGGRARGPRGRRGAGRGR 633
G R GGR G A GGR + GG A G G +G G R G G G G R
Sbjct: 399 GDRGGGGRSEGGGAEGGRAKARVGGGADGMGGGRQGCGWWVGSGWRGIGMLGG*GGGGWR 578
Score = 29.6 bits (65), Expect = 3.7
Identities = 22/57 (38%), Positives = 24/57 (41%), Gaps = 5/57 (8%)
Frame = +2
Query: 583 ARAAGGRGRGDRARGGRGRGGRARGEGAPAEGARGGRARG-----PRGRRGAGRGRG 634
+R GRGR AR G GGR + R RG R RRG G GRG
Sbjct: 626 SRTRPGRGRAG*ARDGPTWGGRGER*AFTSTACAASRNRGYAPT*ARVRRGWG*GRG 796
>BQ144057 similar to GP|1483567|emb| viral proteinase {Pseudorabies virus},
partial (5%)
Length = 1295
Score = 39.7 bits (91), Expect = 0.004
Identities = 21/52 (40%), Positives = 25/52 (47%)
Frame = +2
Query: 582 GARAAGGRGRGDRARGGRGRGGRARGEGAPAEGARGGRARGPRGRRGAGRGR 633
GARAAG GRG R G RG R +G + RA+ G RG G+
Sbjct: 638 GARAAGDPGRGARTAAGTARGRREKGSAGQRQEDNRERAKSGAGARGEAGGQ 793
Score = 38.5 bits (88), Expect = 0.008
Identities = 23/56 (41%), Positives = 25/56 (44%)
Frame = +1
Query: 579 AVRGARAAGGRGRGDRARGGRGRGGRARGEGAPAEGARGGRARGPRGRRGAGRGRG 634
A R R AGG G R RG G R +GE ARG + GAGR RG
Sbjct: 622 ARRAQRGAGGGGPRSRGAHRRGNGTRQKGERKRRAEARGQQGTSEERSGGAGRSRG 789
Score = 33.5 bits (75), Expect = 0.26
Identities = 24/56 (42%), Positives = 28/56 (49%), Gaps = 1/56 (1%)
Frame = +2
Query: 581 RGARAAGGRGRGDRARGGRGRGGRARGEGAPAEGARGGRARGPRGRRGAGRG-RGE 635
RG R+ G R GD RG R G ARG +G+ G R R R +G G RGE
Sbjct: 623 RGGRS-GARAAGDPGRGARTAAGTARGR--REKGSAGQRQEDNRERAKSGAGARGE 781
Score = 30.0 bits (66), Expect = 2.8
Identities = 22/49 (44%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +1
Query: 589 RGRGDRARGGRGRGGR--ARGEGAPAEGA-RGGRARGPRGRRGAGRGRG 634
RG G ++ GR RG R A E A A A RG GPR R RG G
Sbjct: 547 RGGGAKSVDGRDRGRRERASRENAGARRAQRGAGGGGPRSRGAHRRGNG 693
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.136 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,841,049
Number of Sequences: 36976
Number of extensions: 256892
Number of successful extensions: 2832
Number of sequences better than 10.0: 169
Number of HSP's better than 10.0 without gapping: 2000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2501
length of query: 635
length of database: 9,014,727
effective HSP length: 102
effective length of query: 533
effective length of database: 5,243,175
effective search space: 2794612275
effective search space used: 2794612275
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0042.1