BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0041.4
(266 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC79407 similar to GP|20197174|gb|AAM14957.1 hypothetical protei... 440 e-124
TC81538 similar to GP|9758506|dbj|BAB08914.1 senescence-associat... 247 3e-66
TC91286 weakly similar to PIR|E84578|E84578 probable senescence-... 183 7e-47
TC92395 similar to GP|19699320|gb|AAL91270.1 AT3g12090/T21B14_11... 152 1e-37
TC81315 weakly similar to GP|19699320|gb|AAL91270.1 AT3g12090/T2... 96 2e-20
TC84028 similar to GP|21554095|gb|AAM63176.1 unknown {Arabidopsi... 34 0.067
AW208025 similar to GP|21554095|gb| unknown {Arabidopsis thalian... 34 0.067
BE124944 34 0.067
TC81313 similar to GP|10177964|dbj|BAB11347. urophorphyrin III m... 33 0.087
TC80727 similar to GP|15982870|gb|AAL09782.1 At1g21880/T26F17_5 ... 32 0.19
TC80598 similar to GP|18176361|gb|AAL60030.1 putative Rab gerany... 31 0.57
TC92472 similar to GP|5579092|gb|AAD45424.1| gibberellin 2-oxida... 30 0.96
TC86816 similar to GP|10176982|dbj|BAB10214. contains similarity... 30 0.96
TC87668 similar to GP|14326469|gb|AAK60280.1 At1g32400/F5D14_22 ... 30 1.3
AL379317 weakly similar to GP|15144509|gb unknown {Lycopersicon ... 29 1.6
TC87344 similar to PIR|T01049|T01049 hypothetical protein YUP8H1... 29 1.6
TC92892 similar to GP|10177964|dbj|BAB11347. urophorphyrin III m... 29 1.6
BI270627 similar to PIR|H96780|H96 hypothetical protein F9E10.6 ... 29 2.1
BI310191 similar to GP|15529153|gb AT4g23490/F16G20_190 {Arabido... 29 2.1
TC91619 similar to GP|21592711|gb|AAM64660.1 unknown {Arabidopsi... 28 2.8
>TC79407 similar to GP|20197174|gb|AAM14957.1 hypothetical protein
{Arabidopsis thaliana}, partial (87%)
Length = 1053
Score = 440 bits (1132), Expect = e-124
Identities = 195/266 (73%), Positives = 232/266 (86%)
Frame = +2
Query: 1 MVRLSNNLIGLLNFLTLLLSIPILVTGVWLSKQPGTDCERWLERPIIALGVFLLLVSLAG 60
++++SNNLIG+LNFLTL+LSIPIL+TG+WL KQ ++CER+LE+PII LGVFLL+VSL G
Sbjct: 116 IMKISNNLIGILNFLTLILSIPILLTGIWLHKQATSECERFLEKPIIILGVFLLIVSLMG 295
Query: 61 LVGACCRVSWLLWVYLLVMFLLIVLVFAFTIFAFAVTNKGAGEALSGRGYREYRLGDYSN 120
+G CCRV+WLLW YL MFLLIV++F FTIFAF VTNKGAGE+LS +GY+EYRLGDYSN
Sbjct: 296 FIGGCCRVTWLLWFYLFFMFLLIVVLFVFTIFAFVVTNKGAGESLSNKGYKEYRLGDYSN 475
Query: 121 WLQKRVNSTGNWNRIRSCLGSGKLCSEFRNRFVNDTAEQFYAENLSALQSGCCKPSNDCG 180
WLQKRVN GNWNRI+SCL SGKLC +F ++F+NDTA++FY ++L+ALQSGCCKPSNDCG
Sbjct: 476 WLQKRVNDNGNWNRIKSCLQSGKLCIDFHSQFLNDTADKFYLQHLNALQSGCCKPSNDCG 655
Query: 181 FTYQGPSVWNKTEGVNYSNPDCHAWDNDPNVLCFNCQSCKAGLLQNIKTDWKKVAVVNVI 240
FTYQ P+ W G Y+NPDC W NDP VLCFNC+SCKAGLL N+KT+WKKVAVVN+I
Sbjct: 656 FTYQNPTNWTMPAGGTYTNPDCDTWTNDPKVLCFNCKSCKAGLLDNLKTNWKKVAVVNII 835
Query: 241 FLVFLIIVYSIGCCAFRNNRNDNWKR 266
FL+FLIIVYSIGCCAFRNNR D WKR
Sbjct: 836 FLIFLIIVYSIGCCAFRNNRRDGWKR 913
>TC81538 similar to GP|9758506|dbj|BAB08914.1 senescence-associated protein
5-like protein {Arabidopsis thaliana}, partial (92%)
Length = 1073
Score = 247 bits (631), Expect = 3e-66
Identities = 116/260 (44%), Positives = 167/260 (63%)
Frame = +1
Query: 4 LSNNLIGLLNFLTLLLSIPILVTGVWLSKQPGTDCERWLERPIIALGVFLLLVSLAGLVG 63
+SNN+IG +N + ++LSIPI+ G+WL+ +P C ++L+ P+I LGV LL VSLAGL+G
Sbjct: 46 MSNNIIGFINLVAVILSIPIIGAGIWLTNEPADTCVKFLQWPVIILGVLLLFVSLAGLIG 225
Query: 64 ACCRVSWLLWVYLLVMFLLIVLVFAFTIFAFAVTNKGAGEALSGRGYREYRLGDYSNWLQ 123
+ R+S LL YL+ M +LI+L+ IF + VT +G G R Y EYRL D+S +L+
Sbjct: 226 SFWRISCLLIFYLVAMLVLIILLVCLVIFVYMVTLRGHGMIEPNRAYLEYRLDDFSGFLK 405
Query: 124 KRVNSTGNWNRIRSCLGSGKLCSEFRNRFVNDTAEQFYAENLSALQSGCCKPSNDCGFTY 183
+RV S+ W+ IRSCL +C E F A+ F+ L+ +QSGCCKP C +T+
Sbjct: 406 RRVRSSFKWDAIRSCLSQTNMCGELNQSF--RMAQDFFNARLTPMQSGCCKPPTQCAYTF 579
Query: 184 QGPSVWNKTEGVNYSNPDCHAWDNDPNVLCFNCQSCKAGLLQNIKTDWKKVAVVNVIFLV 243
P+ W N ++ DC W ND LC+NC SCKAGLL N++ +WK+ V+ +I +V
Sbjct: 580 VNPTYWISPIN-NAADMDCLQWSNDQTTLCYNCDSCKAGLLANLRKEWKRANVILIITVV 756
Query: 244 FLIIVYSIGCCAFRNNRNDN 263
LI+VY IGC AFRN + ++
Sbjct: 757 VLIVVYLIGCFAFRNAKTED 816
>TC91286 weakly similar to PIR|E84578|E84578 probable senescence-associated
protein 5 [imported] - Arabidopsis thaliana, partial
(71%)
Length = 759
Score = 183 bits (464), Expect = 7e-47
Identities = 84/216 (38%), Positives = 131/216 (59%), Gaps = 1/216 (0%)
Frame = +2
Query: 4 LSNNLIGLLNFLTLLLSIPILVTGVWLSKQPGTDCERWLERPIIALGVFLLLVSLAGLVG 63
+SNN+ +LN + +L SIPI+ +G+WL+ +P +C PI+ +G+ + LV+L G +G
Sbjct: 104 VSNNITAVLNIIAILASIPIIASGIWLASKPDNECIANFRWPIVIIGILVFLVALTGFIG 283
Query: 64 ACCRVSWLLWVYLLVMFLLIVLVFAFTIFAFAVTNKGAGEALSGRGYREYRLGDYSNWLQ 123
A LL +YL M LLI L+ +FAF VT + RGY+E+RL +S+WL+
Sbjct: 284 AYYNKEGLLALYLFAMALLIALLLIILVFAFVVTRPDGSYVVPDRGYKEFRLDGFSSWLR 463
Query: 124 KRVNSTGNWNRIRSCLGSGKLCSEFRNRFVNDTAEQFYAENLSALQSGCCKPSNDCGFTY 183
RV +G+W +I CL + +C + ++ TA+QF+ ++S LQSGCCKP CG++Y
Sbjct: 464 HRVTGSGSWRKIMPCLAASDVCIKLTQNYI--TADQFFNSHISPLQSGCCKPPTVCGYSY 637
Query: 184 QGPSVWNKTEGVN-YSNPDCHAWDNDPNVLCFNCQS 218
P +W T VN ++ C+ W+ND LC+NC +
Sbjct: 638 VSPIMW--TNPVNPMADSRCNLWNNDQKQLCYNCNA 739
>TC92395 similar to GP|19699320|gb|AAL91270.1 AT3g12090/T21B14_110
{Arabidopsis thaliana}, partial (54%)
Length = 575
Score = 152 bits (385), Expect = 1e-37
Identities = 70/147 (47%), Positives = 98/147 (66%)
Frame = +1
Query: 1 MVRLSNNLIGLLNFLTLLLSIPILVTGVWLSKQPGTDCERWLERPIIALGVFLLLVSLAG 60
M R SN +IGLLN LTLL SIPI+ G+W+++ T C +L+ P++ +G +L++SLAG
Sbjct: 112 MYRFSNTVIGLLNLLTLLASIPIIGAGLWMARS-STTCANFLQTPLLVIGFIVLVISLAG 288
Query: 61 LVGACCRVSWLLWVYLLVMFLLIVLVFAFTIFAFAVTNKGAGEALSGRGYREYRLGDYSN 120
+GAC V+ LW+YL++M LLIV + TIF F VT+KG G + GR Y EY L DYS
Sbjct: 289 FIGACFHVACALWLYLVIMLLLIVALLGLTIFGFGVTSKGGGVEVPGRSYSEYHLTDYSP 468
Query: 121 WLQKRVNSTGNWNRIRSCLGSGKLCSE 147
WL+KR+ WN I++C+ K C +
Sbjct: 469 WLKKRIQDPRYWNTIKNCILGSKTCDK 549
>TC81315 weakly similar to GP|19699320|gb|AAL91270.1 AT3g12090/T21B14_110
{Arabidopsis thaliana}, partial (25%)
Length = 629
Score = 95.5 bits (236), Expect = 2e-20
Identities = 39/91 (42%), Positives = 58/91 (62%)
Frame = +3
Query: 170 SGCCKPSNDCGFTYQGPSVWNKTEGVNYSNPDCHAWDNDPNVLCFNCQSCKAGLLQNIKT 229
+GCCKP C + + + + DC+ W N+P +LC+ C SCKAG+L++I+
Sbjct: 30 TGCCKPPTACNYNMEAVMMTQDS--------DCYKWSNEPTLLCYECDSCKAGVLEDIRR 185
Query: 230 DWKKVAVVNVIFLVFLIIVYSIGCCAFRNNR 260
+W K++V+ V L+ LI +YSIGCCAFRN R
Sbjct: 186 NWHKLSVLTVTMLILLIGIYSIGCCAFRNAR 278
>TC84028 similar to GP|21554095|gb|AAM63176.1 unknown {Arabidopsis
thaliana}, partial (10%)
Length = 555
Score = 33.9 bits (76), Expect = 0.067
Identities = 11/23 (47%), Positives = 18/23 (77%)
Frame = +3
Query: 67 RVSWLLWVYLLVMFLLIVLVFAF 89
R+ WL+W+ L+V+FLL+ L + F
Sbjct: 69 RIPWLIWIQLIVLFLLLALFYIF 137
>AW208025 similar to GP|21554095|gb| unknown {Arabidopsis thaliana}, partial
(10%)
Length = 414
Score = 33.9 bits (76), Expect = 0.067
Identities = 11/23 (47%), Positives = 18/23 (77%)
Frame = +2
Query: 67 RVSWLLWVYLLVMFLLIVLVFAF 89
R+ WL+W+ L+V+FLL+ L + F
Sbjct: 125 RIPWLIWIQLIVLFLLLALFYIF 193
>BE124944
Length = 568
Score = 33.9 bits (76), Expect = 0.067
Identities = 11/23 (47%), Positives = 18/23 (77%)
Frame = +1
Query: 67 RVSWLLWVYLLVMFLLIVLVFAF 89
R+ WL+W+ L+V+FLL+ L + F
Sbjct: 121 RIPWLIWIQLIVLFLLLALFYIF 189
>TC81313 similar to GP|10177964|dbj|BAB11347. urophorphyrin III methylase
{Arabidopsis thaliana}, partial (71%)
Length = 1121
Score = 33.5 bits (75), Expect = 0.087
Identities = 16/49 (32%), Positives = 29/49 (58%), Gaps = 4/49 (8%)
Frame = +1
Query: 41 WLERPIIALGVFLL-LVSLAGLVGACCRVSWLL---WVYLLVMFLLIVL 85
WLE+ ++ L LL L+ L ++ CC + WL+ W++L++M +L
Sbjct: 469 WLEQDLVILSC*LLRLLELLRVLICCCMIGWLVMMFWIWLVIMLNFCML 615
>TC80727 similar to GP|15982870|gb|AAL09782.1 At1g21880/T26F17_5
{Arabidopsis thaliana}, partial (69%)
Length = 1019
Score = 32.3 bits (72), Expect = 0.19
Identities = 29/89 (32%), Positives = 45/89 (49%), Gaps = 9/89 (10%)
Frame = +1
Query: 2 VRLSNNLIGLLNFLTLLLSIPILVTGVWLSKQPGTDC----ERWLERPIIALGVFLLL-- 55
+R+ L+ L FL L+L + +L+ G P C RW+ I+ LG+ LLL
Sbjct: 514 IRMFLMLVRTLLFLFLVLVLMVLIMGC-----PRFTCLMLFSRWIV*IILLLGILLLLLI 678
Query: 56 ---VSLAGLVGACCRVSWLLWVYLLVMFL 81
+ L GL+G+ LL ++LL +FL
Sbjct: 679 **MLMLWGLLGS------LLVIFLLFLFL 747
>TC80598 similar to GP|18176361|gb|AAL60030.1 putative Rab geranylgeranyl
transferase {Arabidopsis thaliana}, partial (22%)
Length = 767
Score = 30.8 bits (68), Expect = 0.57
Identities = 27/92 (29%), Positives = 37/92 (39%), Gaps = 4/92 (4%)
Frame = +3
Query: 120 NWLQKRVNSTGNWNRIRSCLGSGKLCSEFRNRFVND----TAEQFYAENLSALQSGCCKP 175
N L+K S G W+ + L G + R +ND A F+A N + K
Sbjct: 456 NALKKNFKSYGAWHHRKWVLSKGHSSIDNELRLLNDFQKADARNFHAWNYRRFVTALMKI 635
Query: 176 SNDCGFTYQGPSVWNKTEGVNYSNPDCHAWDN 207
S++ Y K GVN+SN AW N
Sbjct: 636 SDEDELKYT-----EKVIGVNFSN--YSAWHN 710
>TC92472 similar to GP|5579092|gb|AAD45424.1| gibberellin 2-oxidase-like
protein {Pisum sativum}, partial (33%)
Length = 671
Score = 30.0 bits (66), Expect = 0.96
Identities = 15/44 (34%), Positives = 22/44 (49%)
Frame = -1
Query: 168 LQSGCCKPSNDCGFTYQGPSVWNKTEGVNYSNPDCHAWDNDPNV 211
L SG KP GF GPS W++ G + N + W N+ ++
Sbjct: 443 LNSGVTKP*RVSGFFVVGPSKWSEERGPGWCNQNW--WSNNGSI 318
>TC86816 similar to GP|10176982|dbj|BAB10214. contains similarity to unknown
protein~emb|CAB89322.1~gene_id:MYH19.8 {Arabidopsis
thaliana}, partial (71%)
Length = 1314
Score = 30.0 bits (66), Expect = 0.96
Identities = 20/82 (24%), Positives = 35/82 (42%)
Frame = +1
Query: 72 LWVYLLVMFLLIVLVFAFTIFAFAVTNKGAGEALSGRGYREYRLGDYSNWLQKRVNSTGN 131
+WV L+ F + L+ F +F + + E + G Y N+L +++ T N
Sbjct: 211 IWVCFLLCFYTLFLLCIFALFQWELRETWLKE----------KGGSYVNYLMRQIPIT*N 360
Query: 132 WNRIRSCLGSGKLCSEFRNRFV 153
R +G+ FRN F+
Sbjct: 361 QGRTGGIFVAGRR*RRFRNCFL 426
>TC87668 similar to GP|14326469|gb|AAK60280.1 At1g32400/F5D14_22
{Arabidopsis thaliana}, partial (79%)
Length = 1553
Score = 29.6 bits (65), Expect = 1.3
Identities = 17/54 (31%), Positives = 25/54 (45%)
Frame = +2
Query: 41 WLERPIIALGVFLLLVSLAGLVGACCRVSWLLWVYLLVMFLLIVLVFAFTIFAF 94
W I +G L +VS G +GA R L Y +++ LLI++ F F
Sbjct: 554 WFIYLFIGVGAVLFVVSCFGCIGATTRNGCCLICYSILVALLILVELGCAAFLF 715
>AL379317 weakly similar to GP|15144509|gb unknown {Lycopersicon esculentum},
partial (5%)
Length = 491
Score = 29.3 bits (64), Expect = 1.6
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +3
Query: 46 IIALGVFLLLVSLAGLVGACCRVSWLLWVYLL---VMFLLIVLVFAFTIFAFAVTNKGA 101
++ +GVF L+++L L+G W L V +L +M ++++LV +F F V + A
Sbjct: 39 MVVIGVFCLVLNLMTLIGLL--GGWSLLVLILKAMMMMMMMILVVIVLLFWFLVIHLAA 209
>TC87344 similar to PIR|T01049|T01049 hypothetical protein YUP8H12R.32 -
Arabidopsis thaliana, partial (20%)
Length = 922
Score = 29.3 bits (64), Expect = 1.6
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -1
Query: 70 WLLWVYLLVMFLLIVLVFAFTI-FAFAVTNKGAGEALSGRGYREYRLGDYSNWLQKRVNS 128
WL LL+MF ++++ F+I A A+T ++L + S+ ++K+ +
Sbjct: 595 WLSVFMLLMMFNTVLMMMTFSIAIAIAITT--------------HQL*NLSSAVKKKADR 458
Query: 129 TGNWNRIRSCLGSGK 143
T NRI +CL K
Sbjct: 457 TQKPNRISNCLVKNK 413
>TC92892 similar to GP|10177964|dbj|BAB11347. urophorphyrin III methylase
{Arabidopsis thaliana}, partial (48%)
Length = 778
Score = 29.3 bits (64), Expect = 1.6
Identities = 15/43 (34%), Positives = 26/43 (59%), Gaps = 4/43 (9%)
Frame = +2
Query: 41 WLERPIIALGVFLL-LVSLAGLVGACCRVSWLL---WVYLLVM 79
WLE+ ++ L LL L+ L ++ CC + WL+ W++L +M
Sbjct: 332 WLEQDLVILN**LLRLLELLRVLICCCMIGWLVMMFWIWLDLM 460
>BI270627 similar to PIR|H96780|H96 hypothetical protein F9E10.6 [imported] -
Arabidopsis thaliana, partial (48%)
Length = 635
Score = 28.9 bits (63), Expect = 2.1
Identities = 19/59 (32%), Positives = 24/59 (40%)
Frame = +1
Query: 180 GFTYQGPSVWNKTEGVNYSNPDCHAWDNDPNVLCFNCQSCKAGLLQNIKTDWKKVAVVN 238
GF GP V YS ND + CF Q C + IKT+ K++ V N
Sbjct: 256 GFQCVGPKVV-------YSFMQVAGLVNDHLITCFRYQECNVAIKTEIKTEVKEIKV*N 411
>BI310191 similar to GP|15529153|gb AT4g23490/F16G20_190 {Arabidopsis
thaliana}, partial (35%)
Length = 687
Score = 28.9 bits (63), Expect = 2.1
Identities = 14/39 (35%), Positives = 17/39 (42%)
Frame = +3
Query: 175 PSNDCGFTYQGPSVWNKTEGVNYSNPDCHAWDNDPNVLC 213
P +C + PS +K V Y PD H WD P C
Sbjct: 450 PHPECRWKMANPSALDKV--VVYKKPDPHLWDRAPRRNC 560
>TC91619 similar to GP|21592711|gb|AAM64660.1 unknown {Arabidopsis
thaliana}, partial (76%)
Length = 670
Score = 28.5 bits (62), Expect = 2.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 62 VGACCRVSWLLWVYLLVMFLLIVL 85
V CC+ S ++W LL++ LL++L
Sbjct: 241 VNYCCKESMIMWKSLLILLLLLLL 312
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.326 0.141 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,134,837
Number of Sequences: 36976
Number of extensions: 218370
Number of successful extensions: 1750
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 1728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1739
length of query: 266
length of database: 9,014,727
effective HSP length: 94
effective length of query: 172
effective length of database: 5,538,983
effective search space: 952705076
effective search space used: 952705076
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0041.4