TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0039.8
         (415 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG585958 weakly similar to GP|22830897|dbj ORF-B {Oryza sativa (...    89  3e-18
TC90837 weakly similar to GP|22202752|dbj|BAC07409. hypothetical...    35  0.070
TC83628 similar to GP|16604352|gb|AAL24182.1 AT5g12010/F14F18_18...    33  0.20
BQ150930 similar to SP|O70133|DDX9 ATP-dependent RNA helicase A ...    28  6.5
TC90710 similar to GP|14488078|gb|AAK63859.1 At1g05170/YUP8H12_2...    28  6.5
TC89095 similar to GP|16604352|gb|AAL24182.1 AT5g12010/F14F18_18...    28  8.5

>BG585958 weakly similar to GP|22830897|dbj ORF-B {Oryza sativa (japonica
           cultivar-group)}, partial (13%)
          Length = 769

 Score = 89.0 bits (219), Expect = 3e-18
 Identities = 42/76 (55%), Positives = 57/76 (74%)
 Frame = +2

Query: 37  QQHANTVRPKRTRKVIKRDREAGNERLWKDYFSENPVYTEELFRRRFRMQKHVFLRIVGA 96
           ++ A++ RP+  R+ I+R+RE G +RL+ DYFSE PVY +E FRRR+RM KHVFLRIV A
Sbjct: 443 EEFASSSRPRSQRRNIERNREEGYKRLFNDYFSEAPVYMDE*FRRRYRMHKHVFLRIVEA 622

Query: 97  LRSHNPYFLMSVDEVG 112
           L  H+ YF ++VD  G
Sbjct: 623 LGQHDEYFQLTVDATG 670


>TC90837 weakly similar to GP|22202752|dbj|BAC07409. hypothetical
           protein~similar to Oryza sativa chromosome10
           OSJNBa0079H13.17, partial (7%)
          Length = 596

 Score = 34.7 bits (78), Expect = 0.070
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
 Frame = +1

Query: 265 RYYLADGIYPPWATFVKTIPM-----------PQGEKRQKFMKRQEAARKDVERAFNVLQ 313
           RYYL D  YP    ++   P            P    ++ F +   + R  +ER+F VL+
Sbjct: 7   RYYLVDKGYPDKEGYMVPYPRIRYHQSQFEHEPPTNAQEAFNRAHSSLRSCIERSFGVLK 186

Query: 314 SRFAIVRGPSRFWHPNEMKSIMYACIILHNMI 345
            R+ I+    +F    ++  ++ A   LHN I
Sbjct: 187 KRWKILNKMPQFSVKTQI-DVIIAAFALHNYI 279


>TC83628 similar to GP|16604352|gb|AAL24182.1 AT5g12010/F14F18_180
           {Arabidopsis thaliana}, partial (23%)
          Length = 773

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 31/121 (25%), Positives = 50/121 (40%), Gaps = 7/121 (5%)
 Frame = +2

Query: 62  RLW-----KDYFSE--NPVYTEELFRRRFRMQKHVFLRIVGALRSHNPYFLMSVDEVGRQ 114
           RLW     KD++       + ++ FRR FRM K  F  I   L S     +   +   R 
Sbjct: 386 RLWVKDRPKDWWESCNREDFPDDEFRRCFRMSKQTFNMICNELDSS----VTKKNTTLRD 553

Query: 115 GLSPLQKCTAVIRMLVYGSPADSVDEYVRIGESTAIECLNFFVEGVCAVFGETYLRRPNQ 174
            +   Q+    I  L  G P   V +   +G ST  + +      + +V  + +LR P++
Sbjct: 554 AIPVRQRVAVCIYRLATGEPLRLVSKKFGLGISTCHKLVLEVCAAIKSVLMQKFLRWPDE 733

Query: 175 E 175
           E
Sbjct: 734 E 736


>BQ150930 similar to SP|O70133|DDX9 ATP-dependent RNA helicase A (Nuclear DNA
           helicase II) (NDH II) (DEAD-box protein 9) (mHEL-5).,
           partial (1%)
          Length = 826

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
 Frame = -3

Query: 36  YQQHANTVR-------PKRTRKVIKRDREAGNERLWKDYFSENP 72
           + +HANT         P+RTR  ++R+R+         Y+  NP
Sbjct: 671 HDRHANTTTL*LTRA*PERTRVTVRRERQVETHTYITQYYETNP 540


>TC90710 similar to GP|14488078|gb|AAK63859.1 At1g05170/YUP8H12_22
           {Arabidopsis thaliana}, partial (73%)
          Length = 1084

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 18/70 (25%), Positives = 34/70 (47%), Gaps = 5/70 (7%)
 Frame = +3

Query: 229 SNNDINVLNQSSVFNEVLSGNAPMVNFSVNETMYNMRYYLADGIYPPWAT-----FVKTI 283
           SN ++ + +  +    + SG     +  ++E+    RY +  GI   +++      V+  
Sbjct: 27  SNLEMELASAKAAQESLKSGAPVSEDMKISESTGRRRYLMVIGINTAFSSRKRRDSVRAT 206

Query: 284 PMPQGEKRQK 293
            MPQGEKR+K
Sbjct: 207 WMPQGEKRKK 236


>TC89095 similar to GP|16604352|gb|AAL24182.1 AT5g12010/F14F18_180
           {Arabidopsis thaliana}, partial (15%)
          Length = 696

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
 Frame = +1

Query: 62  RLW-----KDYFSE--NPVYTEELFRRRFRMQKHVFLRIVGALRS 99
           RLW     KD++ +  +P + EE FRR FRM K  F  I   L S
Sbjct: 457 RLWVKERPKDWWQKCSSPDFPEEEFRRCFRMSKATFEFICQELES 591


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.322    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,186,350
Number of Sequences: 36976
Number of extensions: 159267
Number of successful extensions: 706
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of query: 415
length of database: 9,014,727
effective HSP length: 99
effective length of query: 316
effective length of database: 5,354,103
effective search space: 1691896548
effective search space used: 1691896548
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)