BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0039.13
(673 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC91751 similar to GP|2739382|gb|AAC14505.1| unknown protein {Ar... 47 3e-05
AW585396 45 9e-05
BQ149597 similar to PIR|B84583|B84 hypothetical protein At2g1995... 45 1e-04
TC82954 weakly similar to GP|8809591|dbj|BAA97142.1 emb|CAB82814... 43 4e-04
TC80893 similar to GP|4557063|gb|AAD22502.1| expressed protein {... 39 0.005
TC89077 weakly similar to GP|21740511|emb|CAD41490. OSJNBa0029H0... 39 0.005
TC82470 homologue to GP|23497460|gb|AAN37003.1 hypothetical prot... 39 0.008
AJ499968 weakly similar to GP|23495961|gb| hypothetical protein ... 37 0.019
BF644046 37 0.019
TC82047 weakly similar to GP|21555669|gb|AAM63910.1 remorin {Ara... 36 0.042
TC84896 similar to GP|7596769|gb|AAF64540.1| unknown protein {Ar... 36 0.055
BF632236 weakly similar to GP|22832113|gb CG32662-PA {Drosophila... 34 0.16
TC93283 weakly similar to GP|23476966|emb|CAD43403. SMC3 protein... 34 0.16
TC86034 similar to GP|6815067|dbj|BAA90354.1 ESTs AU082210(C5365... 34 0.21
TC86560 similar to GP|8843737|dbj|BAA97285.1 myosin heavy chain-... 33 0.27
TC80288 weakly similar to PIR|T06029|T06029 hypothetical protein... 33 0.27
TC85851 similar to PIR|T12180|T12180 probable transcription fact... 33 0.35
AL388248 weakly similar to GP|6062758|gb|A NADH dehydrogenase su... 33 0.35
TC91923 weakly similar to GP|1946369|gb|AAB63087.1| unknown prot... 33 0.35
TC80510 similar to PIR|T05005|T05005 hypothetical protein T19P19... 33 0.46
>TC91751 similar to GP|2739382|gb|AAC14505.1| unknown protein {Arabidopsis
thaliana}, partial (38%)
Length = 1200
Score = 46.6 bits (109), Expect = 3e-05
Identities = 40/150 (26%), Positives = 68/150 (44%), Gaps = 7/150 (4%)
Frame = +2
Query: 495 ELEELREKTEKDDQLISSMSKELEEGCSAIEELSKALDNMKLENEQLKKKVQDGDAVRED 554
E+ E R++ E +Q + + KEL+ IEEL L+ + E +Q ++ + E+
Sbjct: 311 EIPEYRKQAETAEQTKNQVLKELDSTKRLIEELKLNLERAQTEEQQARQDSELAKLRVEE 490
Query: 555 LEGRLK-----AAEGKAETGAARLKEAEAAWLKEREQSSAVKKELENRVSSLEADKKKL- 608
+E + AA+ + E AR A +E+ A++KE + V+ + KK
Sbjct: 491 MEQGIADESSVAAKAQLEVAKARYTAAITDLAAVKEELDALRKEYASLVTDRDEAIKKAE 670
Query: 609 -AATVSKINKASFNNAVSQLAVVNPGLETA 637
A T SK + S + +L LETA
Sbjct: 671 EAVTASKEVEKSVEDLTIELIATKESLETA 760
>AW585396
Length = 555
Score = 45.1 bits (105), Expect = 9e-05
Identities = 38/137 (27%), Positives = 65/137 (46%)
Frame = +1
Query: 491 STIPELEELREKTEKDDQLISSMSKELEEGCSAIEELSKALDNMKLENEQLKKKVQDGDA 550
S++ E L EK L+ +KEL + +E ++L E LK V+ G+
Sbjct: 175 SSVEENAHLTTSLEKSQSLLKLKTKELNNLTNLMENSKRSLSKNSDEIADLKDDVKKGEK 354
Query: 551 VREDLEGRLKAAEGKAETGAARLKEAEAAWLKEREQSSAVKKELENRVSSLEADKKKLAA 610
+ +L LKA++ +AET K+A + +QS+ +K LE V+ E KK+
Sbjct: 355 IINELRAELKASKVEAETA----KKAVTEQQQHFDQSTKIK--LEKIVAEKEEMKKE--- 507
Query: 611 TVSKINKASFNNAVSQL 627
+++ A NA S++
Sbjct: 508 --NEMIAAELXNAXSEI 552
>BQ149597 similar to PIR|B84583|B84 hypothetical protein At2g19950 [imported]
- Arabidopsis thaliana, partial (23%)
Length = 634
Score = 44.7 bits (104), Expect = 1e-04
Identities = 28/120 (23%), Positives = 65/120 (53%)
Frame = +3
Query: 498 ELREKTEKDDQLISSMSKELEEGCSAIEELSKALDNMKLENEQLKKKVQDGDAVREDLEG 557
EL + + ++ + + +E + EL + + +++E L +++QD +E
Sbjct: 9 ELEHRAVESSTALARIQRIADERTAKATELEQKVALLEVECSSLNQELQD-------MEA 167
Query: 558 RLKAAEGKAETGAARLKEAEAAWLKEREQSSAVKKELENRVSSLEADKKKLAATVSKINK 617
RL+ + K+ A ++ + +A W +E E++ ++E EN++SSLEA+ +KL ++ + +
Sbjct: 168 RLRREQKKSPEEANQVIQIQA-WQEEVERARQGQREAENKLSSLEAELQKLRVEMAAMKR 344
>TC82954 weakly similar to GP|8809591|dbj|BAA97142.1
emb|CAB82814.1~gene_id:MNB8.8~similar to unknown protein
{Arabidopsis thaliana}, partial (7%)
Length = 783
Score = 42.7 bits (99), Expect = 4e-04
Identities = 27/117 (23%), Positives = 65/117 (55%)
Frame = +3
Query: 496 LEELREKTEKDDQLISSMSKELEEGCSAIEELSKALDNMKLENEQLKKKVQDGDAVREDL 555
L ELR +K D IS ++++L+E +EE K ++ + + ++L++K + + E+L
Sbjct: 441 LNELRVFEKKRDLAISDLNQKLKEMEGLVEEKDKKIEEEEKKRKELEEKAKKAEKDAEEL 620
Query: 556 EGRLKAAEGKAETGAARLKEAEAAWLKEREQSSAVKKELENRVSSLEADKKKLAATV 612
++++ + + ++ L++ + A+++ ++ EL V L+A K++L A +
Sbjct: 621 R---ESSKREGQEHSSDLRKHKTAFIELVSNQRHLEAELGRAVKHLDAAKEELIAVM 782
>TC80893 similar to GP|4557063|gb|AAD22502.1| expressed protein {Arabidopsis
thaliana}, partial (39%)
Length = 883
Score = 39.3 bits (90), Expect = 0.005
Identities = 26/91 (28%), Positives = 41/91 (44%), Gaps = 6/91 (6%)
Frame = +3
Query: 317 EDGQSTDEEVDQETDVAQGEEGHAENQPQPDPEDRGGAEVGGTSGSAKNVSLEADHGSDP 376
+D DE+ D E + G+EG E P+ DPE G +G + + + D G +
Sbjct: 345 DDDDVQDEDDDGEEEDYSGDEGEEEGDPEDDPEANG-------AGGSDDGEDDDDDGDEE 503
Query: 377 VQGKGRSVSEEKD------TRGPASKKRRVE 401
+ G +E+D T P +KKR+ E
Sbjct: 504 DEEDGEDEEDEEDEEEDDETPQPPAKKRK*E 596
>TC89077 weakly similar to GP|21740511|emb|CAD41490. OSJNBa0029H02.6 {Oryza
sativa}, partial (5%)
Length = 1472
Score = 39.3 bits (90), Expect = 0.005
Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 3/131 (2%)
Frame = +1
Query: 316 VEDGQSTDEEVDQETDVAQGEEGHAENQPQPDPEDRGGAEVGGTSGSAKNVSLEADHGSD 375
V + + DEE + + Q + ++ P+ EDR G G + +N S E D +D
Sbjct: 1081 VSNKKEPDEEKHEPNEEKQEPDAEKQDYPETLSEDREGYPQGAQNDEEENSSKERD--AD 1254
Query: 376 PVQGKGRSVSEEKDTRGPASKKRRVEDHQDHADGEVQGSEPERAEPVTVV---PPSPERL 432
+ R E++ GP + D + EV+ S + P P E L
Sbjct: 1255 ESREASRENVNEEEESGPEGNQHE-SDVESSPSREVKKSLDDLTSPEDATFAELPDDEPL 1431
Query: 433 SIWGPRAGNCR 443
W PR+G R
Sbjct: 1432 IKWKPRSGKKR 1464
>TC82470 homologue to GP|23497460|gb|AAN37003.1 hypothetical protein
{Plasmodium falciparum 3D7}, partial (8%)
Length = 1064
Score = 38.5 bits (88), Expect = 0.008
Identities = 32/136 (23%), Positives = 71/136 (51%), Gaps = 5/136 (3%)
Frame = +2
Query: 497 EELREKTEKDDQLISSMSKELEEGCSAIEELSKALDNMKLENEQLKKKVQDGDAVREDLE 556
+EL+ K + Q++ ++SK+ E S ++EL ++++ + + + +++ ++ LE
Sbjct: 386 KELKTKELELRQVMDNISKQKELE-SQVKEL---VNDLVSKQKHFESHIKELESKERQLE 553
Query: 557 GRLKAAEGKAETGAARLKEAEAA---WLKEREQSSAVKKELENRVSSLEADKKKLAATVS 613
GRLK E + + R+ E E+ + E E+ +A L+ ++ L + +K+L V
Sbjct: 554 GRLKEHELEEKEFEGRMNELESKERHFKSEVEEINAKLMPLKGQIKELASKEKQLNGQVK 733
Query: 614 KI--NKASFNNAVSQL 627
++ K F N + +L
Sbjct: 734 ELESKKNQFENRIKEL 781
>AJ499968 weakly similar to GP|23495961|gb| hypothetical protein {Plasmodium
falciparum 3D7}, partial (19%)
Length = 342
Score = 37.4 bits (85), Expect = 0.019
Identities = 31/117 (26%), Positives = 56/117 (47%)
Frame = -3
Query: 495 ELEELREKTEKDDQLISSMSKELEEGCSAIEELSKALDNMKLENEQLKKKVQDGDAVRED 554
E E +E+ E+++Q + KE +E E L+ + E E+ ++K ++ RE
Sbjct: 334 EERERKEREEREEQERIAKEKEEQERKEREERERLELERIAKEKEERERKEKEEREERER 155
Query: 555 LEGRLKAAEGKAETGAARLKEAEAAWLKEREQSSAVKKELENRVSSLEADKKKLAAT 611
LE ++ + + KEAE LKE+E+ + +K E + E ++ K AT
Sbjct: 154 LEAVVRIEKER--------KEAEEKALKEQEEKALLK---EGVIDKKEEEEPKSKAT 17
>BF644046
Length = 597
Score = 37.4 bits (85), Expect = 0.019
Identities = 15/54 (27%), Positives = 29/54 (52%)
Frame = +3
Query: 101 IYMHIYTMKKVKVRMSLTDFQVSVLRHMMVVPSQLHPGGWGFVRGYETACALFG 154
++M+ + + + + T+F+ L+ + V SQLHP F+ G+E +C G
Sbjct: 6 LHMYSFVFEDIGFKFPFTNFECDFLKALNVASSQLHPNCCAFMCGFEISCESLG 167
>TC82047 weakly similar to GP|21555669|gb|AAM63910.1 remorin {Arabidopsis
thaliana}, partial (59%)
Length = 827
Score = 36.2 bits (82), Expect = 0.042
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 9/153 (5%)
Frame = +1
Query: 488 LQGSTIPELEELREKTEKDDQLISSMSKELEEGCSAIEELSKALDNMKLENEQLKKKVQD 547
LQ P EEL EKD + +S++S E AI LD+ K+ ++ K
Sbjct: 217 LQSLLDPVPEELSPVVEKDSETLSTISISQEPNQQAI----STLDDQKVADDHADNKETG 384
Query: 548 GDAVREDLEGRLKAAEGKAETGAARLKEAEAAW---LKEREQSSAVKKEL------ENRV 598
++D + G A+ A + AW K + ++ A KK+ E++
Sbjct: 385 DHDDKKDAKDSTDRDAGLAKIVAEKRLALIKAWEESEKTKAENRAYKKQSSVGLWEESKK 564
Query: 599 SSLEADKKKLAATVSKINKASFNNAVSQLAVVN 631
SS+EA KK + + + ++LA ++
Sbjct: 565 SSIEAQLKKFEENLERKKVEYVSKMKNELAEIH 663
>TC84896 similar to GP|7596769|gb|AAF64540.1| unknown protein {Arabidopsis
thaliana}, partial (16%)
Length = 786
Score = 35.8 bits (81), Expect = 0.055
Identities = 25/74 (33%), Positives = 39/74 (51%), Gaps = 3/74 (4%)
Frame = +1
Query: 525 EELSKALDNMKLENEQLKKKVQDGDAVREDLEGRLKAAEGK--AETGAARLKEAEAAWLK 582
EEL +L KL QLK+++ D ++ DL L++ G+ AE E E A L
Sbjct: 175 EELESSLSKEKLHTLQLKQELADAESSNSDLYKELQSVRGQLAAEQSRCFKLEVEVAELG 354
Query: 583 EREQS-SAVKKELE 595
++ Q+ ++KELE
Sbjct: 355 QKLQNFGTLQKELE 396
>BF632236 weakly similar to GP|22832113|gb CG32662-PA {Drosophila
melanogaster}, partial (3%)
Length = 522
Score = 34.3 bits (77), Expect = 0.16
Identities = 28/98 (28%), Positives = 47/98 (47%)
Frame = +3
Query: 495 ELEELREKTEKDDQLISSMSKELEEGCSAIEELSKALDNMKLENEQLKKKVQDGDAVRED 554
ELE ++ E ++ S ++ + IEE K L++ + Q K KVQ+ + +
Sbjct: 105 ELEGRVKELELQNKHFESQVEDFKSKDKQIEERWKKLES---KENQFKVKVQELELKEKQ 275
Query: 555 LEGRLKAAEGKAETGAARLKEAEAAWLKEREQSSAVKK 592
+ GR+K E + + +LKE E +Q AVKK
Sbjct: 276 VAGRVKELESRLDKFDGQLKEPELT----GKQYEAVKK 377
>TC93283 weakly similar to GP|23476966|emb|CAD43403. SMC3 protein
{Arabidopsis thaliana}, partial (18%)
Length = 902
Score = 34.3 bits (77), Expect = 0.16
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Frame = +1
Query: 495 ELEELREKTEKDDQLISSMSKELEEGCSAIEELSKALDNMKLENEQLK-----KKVQDGD 549
E+EEL+ I++ +K+ A+ + K+L++++ + EQLK KK + G
Sbjct: 535 EIEELKRD-------IANSNKQKPLFSKALAKKEKSLEDVQNQIEQLKGSIATKKAEMGT 693
Query: 550 AVREDLEGRLKAAEGKAETGAARLKEAEAAWLKEREQSSAVKKELE-NRVSSLEADKKKL 608
+ + L K LKE A +R +S A K ELE N ++L K++L
Sbjct: 694 ELIDHLTPXEKKLLSDLNPEIKDLKEKLVACKTDRIESEARKAELETNLTTNLXKXKQEL 873
Query: 609 AATVS 613
A +S
Sbjct: 874 EAGIS 888
>TC86034 similar to GP|6815067|dbj|BAA90354.1 ESTs AU082210(C53655)
AU056546(S20671) AU056545(S20671) correspond to a
region of the predicted, partial (42%)
Length = 2412
Score = 33.9 bits (76), Expect = 0.21
Identities = 25/74 (33%), Positives = 38/74 (50%), Gaps = 1/74 (1%)
Frame = +3
Query: 317 EDGQSTDEEV-DQETDVAQGEEGHAENQPQPDPEDRGGAEVGGTSGSAKNVSLEADHGSD 375
E + +EEV ++E D QGE+ ENQ Q D GG + S + V++EA+ G
Sbjct: 252 EGEEEPEEEVAEEEEDDQQGEDETLENQQQQD----GGEASNNAAVSEQTVTVEANGG-- 413
Query: 376 PVQGKGRSVSEEKD 389
G+ + EE+D
Sbjct: 414 ---GENNNGEEEED 446
>TC86560 similar to GP|8843737|dbj|BAA97285.1 myosin heavy chain-like
{Arabidopsis thaliana}, partial (28%)
Length = 2450
Score = 33.5 bits (75), Expect = 0.27
Identities = 27/104 (25%), Positives = 49/104 (46%), Gaps = 7/104 (6%)
Frame = +2
Query: 495 ELEELREKTEKDDQLISSM------SKELEEGCSAIE-ELSKALDNMKLENEQLKKKVQD 547
E EL+EK + + + ++ SK E CSA E ++ A + M L +L + ++
Sbjct: 1325 EHSELKEKESELESTVGNLHVKLRKSKSELEACSADESKVRGASEEMILTLSRLTSETEE 1504
Query: 548 GDAVREDLEGRLKAAEGKAETGAARLKEAEAAWLKEREQSSAVK 591
ED++ + + +AE L+EAE + E++ A K
Sbjct: 1505 ARREVEDMKNKTDELKKEAEATKLALEEAEKKLKEATEEAEAAK 1636
Score = 32.3 bits (72), Expect = 0.61
Identities = 43/190 (22%), Positives = 83/190 (43%), Gaps = 4/190 (2%)
Frame = +2
Query: 443 REHLAQIDDLVLTENDQKYLGDREPAGLLNYVLRASLKTASAVRYLQGSTIPELEELREK 502
RE + + ++ QKY G+ + +N + L+ A RY S + EL+ ++
Sbjct: 647 RESAVKATEAAKSQAKQKY-GESDG---VNGAWKEELENA-VQRY--ASIMTELDAAKQD 805
Query: 503 TEKDDQLISSMSKELEEGCSAIEELSKALDNMKLENEQLKKKVQDGDAVREDLEGRLKAA 562
K Q S S + SA++ +A + MK E++ + ++ AV+E +E
Sbjct: 806 LRKTRQEYDSSS---DARVSAVKRTEEAENAMKENTERVSELSKEISAVKESIE------ 958
Query: 563 EGKAETGAARLKEAEAAWLKEREQSSAVKKELE----NRVSSLEADKKKLAATVSKINKA 618
+ + A+++ ++Q + V E + + ++LE KKKL A + N
Sbjct: 959 ------------QTKLAYVESQQQQALVLTEKDALRQSYKATLEQSKKKLLALKKEFNPE 1102
Query: 619 SFNNAVSQLA 628
+ +QLA
Sbjct: 1103ITKSLEAQLA 1132
>TC80288 weakly similar to PIR|T06029|T06029 hypothetical protein T28I19.100
- Arabidopsis thaliana, partial (14%)
Length = 1460
Score = 33.5 bits (75), Expect = 0.27
Identities = 27/102 (26%), Positives = 44/102 (42%), Gaps = 4/102 (3%)
Frame = +3
Query: 318 DGQSTDEEVDQETDVAQGEEGHAENQPQPDPEDRGGAEVGGTSGSAKNVSLEADHGSDPV 377
D DE VD+E D + + EN+ + D E++GG + A+ +AD S V
Sbjct: 672 DNDREDEVVDEEKDKEEEGDDETENEDKED-EEKGGLVENHENHEAREEHYKADDASSAV 848
Query: 378 QGKGRSVSEE----KDTRGPASKKRRVEDHQDHADGEVQGSE 415
S E + + R+ E+ +H+D E GS+
Sbjct: 849 AHDTHETSTETGNLEHSDLSLQNTRKPENETNHSD-ESYGSQ 971
>TC85851 similar to PIR|T12180|T12180 probable transcription factor - fava
bean, partial (93%)
Length = 2007
Score = 33.1 bits (74), Expect = 0.35
Identities = 38/149 (25%), Positives = 64/149 (42%)
Frame = +3
Query: 440 GNCREHLAQIDDLVLTENDQKYLGDREPAGLLNYVLRASLKTASAVRYLQGSTIPELEEL 499
G + +AQ+ + V+ E + K LGD +PA + A + +G+ E
Sbjct: 807 GTETDEIAQVTEEVMNEGE-KNLGDEKPA------VEADVA--------EGNKDSPANEA 941
Query: 500 REKTEKDDQLISSMSKELEEGCSAIEELSKALDNMKLENEQLKKKVQDGDAVREDLEGRL 559
EK +D ++ LEE +EE KAL +K E ++ K + + L +
Sbjct: 942 EEKEPEDKEMT------LEEYEKVLEEKRKALQTLKTEERKVDTKAFE---TMQALSCKK 1094
Query: 560 KAAEGKAETGAARLKEAEAAWLKEREQSS 588
E A+ GA + K EA +E+ + S
Sbjct: 1095DNTEIFAKLGADKDKRKEAYDKEEKAKKS 1181
>AL388248 weakly similar to GP|6062758|gb|A NADH dehydrogenase subunit II
{Cynolebias alexandri}, partial (7%)
Length = 417
Score = 33.1 bits (74), Expect = 0.35
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Frame = -2
Query: 524 IEELSKALDNMKLENEQLKKKVQD-GDAVREDLEGRLKAAEGKAETGAARLKEAEAAWLK 582
IE L K +NMK + L+ ++++ GD+ E++ G + RLKE A W +
Sbjct: 398 IELLRKERENMKAQIASLQAEMEEKGDS--EEV--------GTLQKHNERLKEKLANWKE 249
Query: 583 EREQSSAVKKELENRVSSLEADKKKLAATVSKINK 617
+ E S ++ E S+ A ++L V +++K
Sbjct: 248 KYEASETEREAAEGEASAANASVRRLTMKVLELSK 144
>TC91923 weakly similar to GP|1946369|gb|AAB63087.1| unknown protein
{Arabidopsis thaliana}, partial (14%)
Length = 1129
Score = 33.1 bits (74), Expect = 0.35
Identities = 26/105 (24%), Positives = 52/105 (48%), Gaps = 3/105 (2%)
Frame = +3
Query: 501 EKTEKDDQL---ISSMSKELEEGCSAIEELSKALDNMKLENEQLKKKVQDGDAVREDLEG 557
EK E + +L I + E+E+ + I++L+ +LDN+KLE + L +V +++ED+
Sbjct: 165 EKIEMEAELKNGIQLLKAEIEQRENNIKDLNVSLDNLKLEKDNLNVEV---GSLKEDVNS 335
Query: 558 RLKAAEGKAETGAARLKEAEAAWLKEREQSSAVKKELENRVSSLE 602
R G + L + E++ +E++ + +LE
Sbjct: 336 R-DGRIGSLDRHLNDLHIEHVQLISSLEEACRQVEEIKTKAKNLE 467
>TC80510 similar to PIR|T05005|T05005 hypothetical protein T19P19.70 -
Arabidopsis thaliana, partial (8%)
Length = 889
Score = 32.7 bits (73), Expect = 0.46
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Frame = +3
Query: 529 KALDNMKLEN--EQLKKKVQDGDAVREDLEGRLKAA--EGKAETGAARLKEAEAAWLKER 584
K +D K+ E+LK++ ++EDL RL A E + AAR KE EAA
Sbjct: 471 KPIDKWKVTELKEELKRRKLVTKGLKEDLINRLDEALREEREAAEAARKKEQEAAEASPE 650
Query: 585 EQSSAVKKELENRVSSLEADKKKLAATVS 613
++++ K+ E + D+ K + T++
Sbjct: 651 QEAAEGSKKDEANGLDTQVDELKDSKTIN 737
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.314 0.134 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,948,812
Number of Sequences: 36976
Number of extensions: 235739
Number of successful extensions: 1147
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of query: 673
length of database: 9,014,727
effective HSP length: 103
effective length of query: 570
effective length of database: 5,206,199
effective search space: 2967533430
effective search space used: 2967533430
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0039.13