BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0033b.8
(1310 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 286 4e-77
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 186 4e-47
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 180 3e-45
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 166 5e-41
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 148 2e-35
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 114 1e-33
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 94 7e-32
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 74 7e-25
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 110 5e-24
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 104 2e-22
BG647824 weakly similar to PIR|G96722|G96 hypothetical protein F... 96 9e-20
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 93 8e-19
TC92908 similar to GP|10140704|gb|AAG13538.1 putative gag-pol po... 86 1e-17
BI262917 weakly similar to GP|19920130|g Putative retroelement {... 88 2e-17
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 84 5e-16
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p... 79 9e-15
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 76 7e-14
BG452576 weakly similar to GP|12005223|gb|A reverse transcriptas... 72 8e-14
BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T... 68 2e-11
BG648737 weakly similar to GP|21433|emb|CA ORF3 {Solanum tuberos... 68 3e-11
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 286 bits (732), Expect = 4e-77
Identities = 144/241 (59%), Positives = 180/241 (73%)
Frame = +2
Query: 934 QVCLLQKSLYGLKQASRQWFNTLSASLKKLGYKQSNADHTLYIKASSGSFTALLLYADDV 993
+VC LQKS+YGLKQASRQW++ LS SL GY QS++D +L+ K SFT LL+Y DD+
Sbjct: 17 KVCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDDI 196
Query: 994 LLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIVLNQRKYALQLISDSG 1053
+LAGND+ EIQ VK L D+F+IKDLG +YFLGLE+ARS GI+LNQRKY L+L+ DSG
Sbjct: 197 VLAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDSG 376
Query: 1054 HLASKPVSTPMDNSQKLGTNIGTPLTDIGSYRRLVGRLLYLNTTRPDITFAVNQLSQFLS 1113
+LA K TP D S KL + D YRRL+G+L+YL TTRPDI+FAV QLSQF+S
Sbjct: 377 NLAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFVS 556
Query: 1114 APTDIHEQAAHRVLKYLKGSPGSGLFYPASSSTTLTAFSDSDWAGCIDTRKSITGYCLFL 1173
P +H QAA RVL+YLK +P GLFY A+S+ L++F+DSDWA C TRKS+TGY +FL
Sbjct: 557 KPQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWVFL 736
Query: 1174 G 1174
G
Sbjct: 737 G 739
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 186 bits (473), Expect = 4e-47
Identities = 87/190 (45%), Positives = 125/190 (65%)
Frame = +1
Query: 809 WRKAMDQEIEALERNQTWILVDKPPDSKPIGCKWVYKVKYKQDGSIERYKARLVVKGYTQ 868
W +AM E +AL N+TW LV PP K IGCKWVY+VK DGS+ ++KARLV KG++Q
Sbjct: 97 WLQAMKTEYKALIDNKTWDLVPLPPHKKAIGCKWVYRVKENPDGSVNKFKARLVAKGFSQ 276
Query: 869 VEGVDFQDTFSPVAKMTTLRVILALCASQ*WHLHQLDVDNAFLHASLDEQIYMTIPQGLV 928
G D+ +TFSPV K T+R+IL + + W + Q+D++NAFL+ L E++YM+ PQG
Sbjct: 277 TLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQIDINNAFLNGFLQEEVYMSQPQGFE 456
Query: 929 CNKANQVCLLQKSLYGLKQASRQWFNTLSASLKKLGYKQSNADHTLYIKASSGSFTALLL 988
+ VC L KSLYGLKQA R W+ L+++ + G+ +S D +L I +G+ L +
Sbjct: 457 AANKSLVCKLNKSLYGLKQAPRAWYEXLTSAQIQFGFTKSRCDPSLLIYNQNGACIYLXI 636
Query: 989 YADDVLLAGN 998
Y DD+L+ G+
Sbjct: 637 YVDDILITGS 666
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 180 bits (457), Expect = 3e-45
Identities = 95/258 (36%), Positives = 156/258 (59%), Gaps = 9/258 (3%)
Frame = +3
Query: 791 ISSSLEPTRFSEAVKHECWRKAMDQEIEALERNQTWILVDKPPDSKPIGCKWVYKVKYKQ 850
++ + +PT F EAVK E WR +M+ E+EA ERN TW L D +K IG KW++K K +
Sbjct: 24 LTMTSDPTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKTKLNE 203
Query: 851 DGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILALCASQ*WHLHQLDVDNAF 910
+G IE+YKARLV KGY+Q GVD+ + F+PVA+ T+R+++AL A Q+ D
Sbjct: 204 NGEIEKYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAA-------QIKRDGVC 362
Query: 911 L------HASLDE--QIYMTIPQGLVCNKANQVCLLQKSLYGLKQASRQWFNTLSASLKK 962
+ H+ ++ + ++ I ++ + ++++LYGLKQA R W++ + A K
Sbjct: 363 IS*M*KAHSCMEN*MRKFLLINHRVM*RRVIS-*RVKRALYGLKQAPRAWYSRIEAYFTK 539
Query: 963 LGYKQSNADHTLYIKASSGSFTALL-LYADDVLLAGNDMHEIQLVKSSLHDQFRIKDLGE 1021
G+++ +HTL++K S G ++ LY DD++ GND + + K S+ +F + DLG+
Sbjct: 540 EGFEKCPYEHTLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDLGK 719
Query: 1022 AKYFLGLEIARSTSGIVL 1039
YFLG+E+ ++ GI +
Sbjct: 720 MHYFLGVEVTQNEKGIYI 773
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 166 bits (420), Expect = 5e-41
Identities = 77/191 (40%), Positives = 125/191 (65%), Gaps = 1/191 (0%)
Frame = -1
Query: 786 SFVMNISSSLEPTRFSEAVKHECWRKAMDQEIEALERNQTWILVDKPPDSKPIGCKWVYK 845
+F++N++ + P + EA++ + W++++ E A+ +N TW + P K + +W++
Sbjct: 591 AFMVNLNENHIPRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRWIFT 412
Query: 846 VKYKQDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILALCASQ*WHLHQLD 905
+KYK DGSIER K RLV +G+T G D+ +TF+PVAK+ T+R++L+L + W L Q+D
Sbjct: 411 IKYKADGSIERKKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQMD 232
Query: 906 VDNAFLHASLDEQIYMTIPQGLV-CNKANQVCLLQKSLYGLKQASRQWFNTLSASLKKLG 964
V NAFL L++++YM P GL K V L+K++YGLKQ+ R W+N LS +L G
Sbjct: 231 VKNAFLQGELEDEVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLNGRG 52
Query: 965 YKQSNADHTLY 975
+++S DHTL+
Sbjct: 51 FRKSELDHTLF 19
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 148 bits (373), Expect = 2e-35
Identities = 75/217 (34%), Positives = 121/217 (55%)
Frame = +1
Query: 1028 LEIARSTSGIVLNQRKYALQLISDSGHLASKPVSTPMDNSQKLGTNIGTPLTDIGSYRRL 1087
+E+ ++ GI + QRKY L+ G S P+ KL + D Y+++
Sbjct: 1 VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180
Query: 1088 VGRLLYLNTTRPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYLKGSPGSGLFYPASSSTT 1147
VG L+YL TRPD+ + ++ +S+F++ PT++H A RVL+YL G+ G+ Y + S
Sbjct: 181 VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK 360
Query: 1148 LTAFSDSDWAGCIDTRKSITGYCLFLGDSLISWRSKKQSTASRSSCESEYRAMATTVCEI 1207
L A++DSD+AG +D RKS +GY L +SW SKKQ + S+ ++E+ A A C+
Sbjct: 361 LEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQS 540
Query: 1208 QWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYH 1244
W+ +L+ L Q +M+ DN S + ++ NP H
Sbjct: 541 VWMRRVLEKLGYTQSGSITMYCDNNSTIKLSKNPVLH 651
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 114 bits (285), Expect(2) = 1e-33
Identities = 58/146 (39%), Positives = 89/146 (60%), Gaps = 1/146 (0%)
Frame = -2
Query: 849 KQDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILALCASQ*WHLHQLDVDN 908
KQ I R K++LVV+GY Q EG+D+ + FSPVA+M +R+++A A + L+Q+DV +
Sbjct: 439 KQA*VITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKS 260
Query: 909 AFLHASLDEQIYMTIPQGLV-CNKANQVCLLQKSLYGLKQASRQWFNTLSASLKKLGYKQ 967
AF++ L E++++ P G N V L K+LYGLKQA R W+ LS L K G+K+
Sbjct: 259 AFINGDLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKR 80
Query: 968 SNADHTLYIKASSGSFTALLLYADDV 993
D+TL++ + +Y DD+
Sbjct: 79 GKIDNTLFLLKRE*ELLIIQVYVDDI 2
Score = 48.9 bits (115), Expect(2) = 1e-33
Identities = 20/55 (36%), Positives = 32/55 (57%)
Frame = -3
Query: 793 SSLEPTRFSEAVKHECWRKAMDQEIEALERNQTWILVDKPPDSKPIGCKWVYKVK 847
SS+EP EA++ W +M +E+ ER++ W LV +P IG +WV++ K
Sbjct: 597 SSIEPKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTRWVFRNK 433
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 94.4 bits (233), Expect(2) = 7e-32
Identities = 48/118 (40%), Positives = 72/118 (60%), Gaps = 1/118 (0%)
Frame = +1
Query: 947 QASRQWFNTLSASLKKLGYKQSNADHTLYIKASSGSFTALLL-YADDVLLAGNDMHEIQL 1005
Q+ R WF+ + +KK GY Q DH ++IK SS A+L+ Y DD+ L G+ I+
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIVYVDDIFLTGDHGK*IKR 180
Query: 1006 VKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIVLNQRKYALQLISDSGHLASKPVSTP 1063
+K+ L ++F IKDLG KYFLG+E+AR G ++QRKY L L+ ++ + K + P
Sbjct: 181 LKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCKTIRDP 354
Score = 62.8 bits (151), Expect(2) = 7e-32
Identities = 31/55 (56%), Positives = 39/55 (70%)
Frame = +2
Query: 1058 KPVSTPMDNSQKLGTNIGTPLTDIGSYRRLVGRLLYLNTTRPDITFAVNQLSQFL 1112
KP TPMD + KLGT L D G Y+RLVG+L+YL+ TRPDI+F V +SQF+
Sbjct: 338 KPSETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQFM 502
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 73.6 bits (179), Expect(2) = 7e-25
Identities = 38/94 (40%), Positives = 55/94 (58%)
Frame = +3
Query: 1206 EIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELDCHIVREKLQQGL 1265
E W+ L+++L Q T ++ D+QSA+HIA NP++H RTKHI + H VRE +++G
Sbjct: 249 EAIWMQRLMEELGHKQEQIT-VYCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGS 425
Query: 1266 VHLLPISTTLQTADVFTKSLTPAPFKTCISKLGM 1299
V + I T AD TKS+ F C S G+
Sbjct: 426 VDMQKIHTNDNLADAMTKSINTDKFIWCRSSYGL 527
Score = 60.1 bits (144), Expect(2) = 7e-25
Identities = 30/75 (40%), Positives = 45/75 (60%)
Frame = +1
Query: 1125 RVLKYLKGSPGSGLFYPASSSTTLTAFSDSDWAGCIDTRKSITGYCLFLGDSLISWRSKK 1184
R+++Y+KG+ G + + S T+ + DSD+AG D RKS TGY L +SW SK
Sbjct: 7 RIMRYIKGTSGVAVCF-GGSELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKL 183
Query: 1185 QSTASRSSCESEYRA 1199
Q+ + S+ E+EY A
Sbjct: 184 QTVVALSTTEAEYMA 228
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 110 bits (274), Expect = 5e-24
Identities = 57/146 (39%), Positives = 84/146 (57%)
Frame = +2
Query: 1154 SDWAGCIDTRKSITGYCLFLGDSLISWRSKKQSTASRSSCESEYRAMATTVCEIQWLHYL 1213
SDWAG +TRKS +GY LG ISW SKKQ + S+ E+EY A + + WL +
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181
Query: 1214 LQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELDCHIVREKLQQGLVHLLPIST 1273
L+ ++ Q PT ++ DN+SA+ ++ NP +H R+KHI++ H +RE + + V + T
Sbjct: 182 LEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYCPT 361
Query: 1274 TLQTADVFTKSLTPAPFKTCISKLGM 1299
+ AD+FTK L F LGM
Sbjct: 362 EEKIADIFTKPLKIESFYKLKKMLGM 439
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 104 bits (260), Expect = 2e-22
Identities = 60/165 (36%), Positives = 96/165 (57%), Gaps = 2/165 (1%)
Frame = +1
Query: 1121 QAAHRVLKYLKGSPGSGLFYP--ASSSTTLTAFSDSDWAGCIDTRKSITGYCLFLGDSLI 1178
QA VLKYL S S L Y A L + D+D+AG +DTRKS++G+ L + I
Sbjct: 1 QALKWVLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTI 180
Query: 1179 SWRSKKQSTASRSSCESEYRAMATTVCEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIA 1238
SW++ +QS + S+ ++EY A V + WL ++ +L Q + D+QSA+H+A
Sbjct: 181 SWKANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGITQ-EYVKIHCDSQSAIHLA 357
Query: 1239 HNPSYHERTKHIELDCHIVREKLQQGLVHLLPISTTLQTADVFTK 1283
++ YHERTKHI++ H +R+ ++ + + +++ ADVFTK
Sbjct: 358 NHQVYHERTKHIDIRLHFIRDMIESKEIVVEKMASEENPADVFTK 492
>BG647824 weakly similar to PIR|G96722|G96 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (5%)
Length = 721
Score = 95.9 bits (237), Expect = 9e-20
Identities = 68/158 (43%), Positives = 89/158 (56%), Gaps = 1/158 (0%)
Frame = -3
Query: 1119 HEQAAHRVLKYLKGSPGSGLFYPASSSTTLTAFSDSDWAGCIDTRKSITGYCLFLGDSLI 1178
H QAA ++L YLK SP +F+P S + AF DSD ID + S
Sbjct: 590 HPQAAIQIL-YLKISPSQ*IFFP--S*IQIKAFCDSD*---IDQAA*TLENQSVIFASS* 429
Query: 1179 SWRSKKQSTASRSSCESEYRAMATTVCEIQWLHYLLQDLNQPQLAPTSMFRDNQSAM-HI 1237
+ S + + YR++ +T+CEI+WL YLL DL + P ++ DNQSA HI
Sbjct: 428 ATHSYAGNLKKKRYNFKIYRSI*STICEIKWLTYLLNDLKFTFIKPAMLYCDNQSAARHI 249
Query: 1238 AHNPSYHERTKHIELDCHIVREKLQQGLVHLLPISTTL 1275
A N S+ ERTKHIELDCHIVR KLQ L H+L I ++L
Sbjct: 248 AANSSFLERTKHIELDCHIVRVKLQLKLFHILHILSSL 135
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 92.8 bits (229), Expect = 8e-19
Identities = 42/91 (46%), Positives = 64/91 (70%)
Frame = +2
Query: 822 RNQTWILVDKPPDSKPIGCKWVYKVKYKQDGSIERYKARLVVKGYTQVEGVDFQDTFSPV 881
+ QT LV KP KPIG +W+YK+K +DG++ +YKARLV KGY + +G+DF + F+PV
Sbjct: 47 QKQTLKLVKKPTGVKPIGLRWIYKIKRNEDGTLIKYKARLVAKGYVKQQGIDFDEVFAPV 226
Query: 882 AKMTTLRVILALCASQ*WHLHQLDVDNAFLH 912
++ T+ ++LAL A+ +H +DV AFL+
Sbjct: 227 VRIETI*LLLALAATNGC*IHHIDVKIAFLN 319
>TC92908 similar to GP|10140704|gb|AAG13538.1 putative gag-pol polyprotein
{Oryza sativa}, partial (1%)
Length = 638
Score = 85.9 bits (211), Expect(2) = 1e-17
Identities = 51/147 (34%), Positives = 84/147 (56%)
Frame = +2
Query: 760 ITSSSTGINYPLSKVLSYDHLNPKYQSFVMNISSSLEPTRFSEAVKHECWRKAMDQEIEA 819
+T +S+ +Y + + Y + K+++ + I+S++EP + +A + + W AM+QEI+
Sbjct: 173 VTLNSSSKSYHIFHYVGYS-FSAKHRASLAAITSNIEPKNYVQAAQ*QEWLAAMEQEIQV 349
Query: 820 LERNQTWILVDKPPDSKPIGCKWVYKVKYKQDGSIERYKARLVVKGYTQVEGVDFQDTFS 879
LE N T L K + C+ VYK+ +K +G IE+YKA+LV K + QVEG DF D
Sbjct: 350 LEENNTSTLEPLREGKKWVDCRPVYKIIHKANGEIEKYKAQLVAKDFVQVEGEDF*D-LC 526
Query: 880 PVAKMTTLRVILALCASQ*WHLHQLDV 906
K R +L + A++ LH +DV
Sbjct: 527 LSNKDDNCRCLLTIAAAKG*QLHLMDV 607
Score = 23.1 bits (48), Expect(2) = 1e-17
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 5/20 (25%)
Frame = +1
Query: 732 PRTS-----QRIRKPPSYLQ 746
PRT+ +RIRKPP YL+
Sbjct: 124 PRTNTITQDKRIRKPPGYLK 183
>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza
sativa} [Oryza sativa (japonica cultivar-group)],
partial (8%)
Length = 426
Score = 87.8 bits (216), Expect = 2e-17
Identities = 42/112 (37%), Positives = 67/112 (59%)
Frame = +1
Query: 554 PQQNAIVERKHQHVISVARALLFQAHLPVTFWSYAVAHAVYLINRLPTPVLDNKCPFQIL 613
PQQN + ER ++ ++ RA+L A + +FW+ AV A Y+INR P+ V+D K P ++
Sbjct: 88 PQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTVIDLKTPMEMW 267
Query: 614 YNTVPDITNLKIFGTLCFVSTLTSHRKKFDPRATKCIFLGFKPDTKGFVTYD 665
D ++L +FG +V + R K DP++ KCIFLG+ + KG+ +D
Sbjct: 268 KGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYXLWD 423
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 83.6 bits (205), Expect = 5e-16
Identities = 45/123 (36%), Positives = 72/123 (57%), Gaps = 3/123 (2%)
Frame = +1
Query: 1098 RPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYLKGSPGSGLFYPASSST---TLTAFSDS 1154
RPDI ++V+ +S+F+ P H AA+R+L+Y++G+ GL +P + + L +SDS
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 1155 DWAGCIDTRKSITGYCLFLGDSLISWRSKKQSTASRSSCESEYRAMATTVCEIQWLHYLL 1214
DW G R+S +GY D+ ISW +KKQ + SS E+EY A + WL ++
Sbjct: 301 DWCG---DRRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSVI 471
Query: 1215 QDL 1217
++L
Sbjct: 472 KEL 480
>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 705
Score = 79.3 bits (194), Expect = 9e-15
Identities = 36/94 (38%), Positives = 58/94 (61%)
Frame = -2
Query: 592 AVYLINRLPTPVLDNKCPFQILYNTVPDITNLKIFGTLCFVSTLTSHRKKFDPRATKCIF 651
A YLINR+PT VL ++ PF++L P +T +++FG LC+V R K + R+ K +F
Sbjct: 704 ACYLINRIPTRVLKDQAPFEVLNQRKPSLTYMRVFGCLCYVLVPGELRNKLEARSRKAMF 525
Query: 652 LGFKPDTKGFVTYDLKSRVISISRNVTFHEHNPF 685
+G+ KG+ YD ++R + +SR+V F E +
Sbjct: 524 IGYSTTQKGYKCYDPEARRVLVSRDVKFIEERGY 423
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 76.3 bits (186), Expect = 7e-14
Identities = 49/133 (36%), Positives = 73/133 (54%), Gaps = 4/133 (3%)
Frame = +1
Query: 553 NPQQNAIVERKHQHVISVARALLFQAHLPV--TFWSYAVAHAVYLINRLPTPVLDNKCPF 610
NPQQN + ER + ++ AR +L A L W A + A +L+NR P LD K P
Sbjct: 388 NPQQNGVAERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPE 567
Query: 611 QILYNTVPDITNLKIFGTLCFVSTLTSHRKKFDPRATKCIFLGFKPDTKGFVTY--DLKS 668
I + D +NL+IFG + + K PRA +CIFL + ++KG+ + D KS
Sbjct: 568 DIWSGNLVDYSNLRIFGCPAYALV---NDGKLAPRAGECIFLSYASESKGYRLWCSDPKS 738
Query: 669 RVISISRNVTFHE 681
+ + +SR+VTF+E
Sbjct: 739 QKLILSRDVTFNE 777
>BG452576 weakly similar to GP|12005223|gb|A reverse transcriptase-like protein
{Spiranthes hongkongensis}, partial (25%)
Length = 676
Score = 71.6 bits (174), Expect(2) = 8e-14
Identities = 44/101 (43%), Positives = 63/101 (61%)
Frame = +2
Query: 956 LSASLKKLGYKQSNADHTLYIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQFR 1015
L ++L LGYKQS DH+++ + FT L+Y DD++ A +D E QLVKS L F
Sbjct: 254 LLSTLISLGYKQSPNDHSIF--SFGRRFTIFLVYLDDIVFARDDHSETQLVKSHLDKNFI 427
Query: 1016 IKDLGEAKYFLGLEIARSTSGIVLNQRKYALQLISDSGHLA 1056
I LG Y +G++IA S S I+ +Q KY ++L+ +SG LA
Sbjct: 428 IIGLGTLHY-VGVKIA*SES*IIDDQCKYTIELLEESGQLA 547
Score = 24.6 bits (52), Expect(2) = 8e-14
Identities = 10/17 (58%), Positives = 11/17 (63%)
Frame = +3
Query: 935 VCLLQKSLYGLKQASRQ 951
VC S+YGLK A RQ
Sbjct: 165 VCKFHNSIYGLKHAHRQ 215
>BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T15F17.l
{Arabidopsis thaliana}, partial (3%)
Length = 539
Score = 68.2 bits (165), Expect = 2e-11
Identities = 39/101 (38%), Positives = 55/101 (53%)
Frame = -3
Query: 1092 LYLNTTRPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYLKGSPGSGLFYPASSSTTLTAF 1151
+ L P+ITF++N LS++ SAPT H + KYLKG GLFY S L +
Sbjct: 531 ILLTLQGPNITFSINLLSRYSSAPTMRH*NGIKHICKYLKGIIDMGLFYSKDCSPDLIGY 352
Query: 1152 SDSDWAGCIDTRKSITGYCLFLGDSLISWRSKKQSTASRSS 1192
++ + +S TGY G+++ISWRS K ST + SS
Sbjct: 351 VNA*YLSDPHKARS*TGYIFTCGNTVISWRSTK*STIATSS 229
>BG648737 weakly similar to GP|21433|emb|CA ORF3 {Solanum tuberosum}, partial
(10%)
Length = 804
Score = 67.8 bits (164), Expect = 3e-11
Identities = 43/126 (34%), Positives = 62/126 (49%), Gaps = 1/126 (0%)
Frame = +3
Query: 717 QAQEPPVNNQNQVIAPRTSQRIRKP-PSYLQDYHCTLLSSDSVPITSSSTGINYPLSKVL 775
Q Q+ +N N I I +P P+ D L D TS +P+ K +
Sbjct: 444 QIQDCSDSNSNFEIENTQDNEICEPIPTVEFDDRLISLRKDKRSCTS------HPICKFI 605
Query: 776 SYDHLNPKYQSFVMNISSSLEPTRFSEAVKHECWRKAMDQEIEALERNQTWILVDKPPDS 835
SYD L+P + +FV N+ P E++ + W+KA+ EI ALE+N+TW L D P
Sbjct: 606 SYDKLSPHHLAFVSNLDKIQIPNSVHESLTNP*WKKAILGEIHALEKNETWELSDLPSGK 785
Query: 836 KPIGCK 841
P+GCK
Sbjct: 786 HPMGCK 803
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.339 0.148 0.479
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,436,873
Number of Sequences: 36976
Number of extensions: 750612
Number of successful extensions: 6070
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 3359
Number of HSP's successfully gapped in prelim test: 381
Number of HSP's that attempted gapping in prelim test: 2512
Number of HSP's gapped (non-prelim): 4020
length of query: 1310
length of database: 9,014,727
effective HSP length: 108
effective length of query: 1202
effective length of database: 5,021,319
effective search space: 6035625438
effective search space used: 6035625438
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 64 (29.3 bits)
Lotus: description of TM0033b.8