TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0031.3
         (547 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BE941280 weakly similar to GP|20197614|g unknown protein {Arabid...   169  3e-42
BM814840 weakly similar to GP|15128241|db helicase-like protein ...   135  5e-32
CB892155 similar to PIR|D86481|D86 hypothetical protein AAG28292...    86  4e-17
BI271341                                                               75  6e-14
TC91093 weakly similar to PIR|T01873|T01873 hypothetical protein...    72  7e-13
CB892166 similar to GP|20197614|gb unknown protein {Arabidopsis ...    45  5e-05
AJ497367 similar to GP|14140286|gb putative helicase {Oryza sati...    45  9e-05
TC84660 similar to PIR|D86481|D86481 hypothetical protein AAG282...    39  0.007
TC80146                                                                39  0.007
TC83215 weakly similar to PIR|F96713|F96713 unknown protein T6L1...    29  4.1
TC77780 weakly similar to GP|23237921|dbj|BAC16494. contains EST...    29  5.3
BG453139 similar to GP|5817349|gb| putative NBS-LRR type disease...    29  5.3
TC93266 similar to PIR|T45709|T45709 hypothetical protein F1P2.4...    28  9.1
TC77427 similar to GP|16648995|gb|AAL24349.1 putative protein {A...    28  9.1

>BE941280 weakly similar to GP|20197614|g unknown protein {Arabidopsis
           thaliana}, partial (8%)
          Length = 403

 Score =  169 bits (428), Expect = 3e-42
 Identities = 86/134 (64%), Positives = 98/134 (72%)
 Frame = -1

Query: 92  LYGFGGTGKTFVWNILYAALRSRGLIVLNVASSGIASLLLPGDRTAHSRFSIPISINEIS 151
           LY +GGT KTF+W  L AALRS G IVL  ASSGI +LL+PG RTAHSRF IP  I+E S
Sbjct: 403 LYDYGGTEKTFIWRALSAALRSEGEIVLACASSGIDALLMPGGRTAHSRFGIPFIIDETS 224

Query: 152 TCNLRQGSPKAELLKKASLIIWDEAPMLNKHCIEALDRSLNDIMKTQSTHGYDIPFGGKV 211
            C +    P A L+ KA LIIWDEAPM++KHC EALDRSL D++KT      DIPFGGKV
Sbjct: 223 MCGVTPNIPLASLVIKAKLIIWDEAPMMHKHCFEALDRSLRDVLKTVDERNKDIPFGGKV 44

Query: 212 VVLGDDFGQILPVI 225
           VVLG DF QIL V+
Sbjct: 43  VVLGGDFRQILLVM 2


>BM814840 weakly similar to GP|15128241|db helicase-like protein {Oryza
           sativa (japonica cultivar-group)}, partial (6%)
          Length = 733

 Score =  135 bits (339), Expect = 5e-32
 Identities = 69/123 (56%), Positives = 90/123 (73%)
 Frame = +3

Query: 422 NGTRMIVNALTKYIIVVTVLNENKMGETTFIPRMSLTPSNSDIPFKFQRRQFSVTLCFVM 481
           +GTR+I+ +L K +I   V+     GE ++IPRM+L PS +++   F+R QF + L F M
Sbjct: 27  HGTRLIIVSLGKNVICARVIGGTHAGEVSYIPRMNLIPSGANVSITFERCQFPLVLSFAM 206

Query: 482 TINKSQGQSLSHVGLYLPRPVFTHGQPYVALYRVKSRKMLKMLIIDDE*VVSNTTRNVVY 541
           TINKSQGQ+L+ VGLYLPRPVFTHGQ YVA+ RVKSR  LK+LI D+    S++T NVVY
Sbjct: 207 TINKSQGQTLTSVGLYLPRPVFTHGQLYVAVSRVKSRSGLKILITDENGSPSSSTVNVVY 386

Query: 542 QEV 544
           QEV
Sbjct: 387 QEV 395


>CB892155 similar to PIR|D86481|D86 hypothetical protein AAG28292.1
           [imported] - Arabidopsis thaliana, partial (4%)
          Length = 572

 Score = 85.9 bits (211), Expect = 4e-17
 Identities = 45/74 (60%), Positives = 54/74 (72%)
 Frame = -2

Query: 474 SVTLCFVMTINKSQGQSLSHVGLYLPRPVFTHGQPYVALYRVKSRKMLKMLIIDDE*VVS 533
           SV + F MTINKSQGQSL H+G+YLP  VF+HGQ YVAL RV SR+ LK+LI +D+    
Sbjct: 373 SVEVYFAMTINKSQGQSLKHIGVYLPSSVFSHGQLYVALSRVTSREGLKILISNDDGEDD 194

Query: 534 NTTRNVVYQEVLDN 547
             T NVVY+EV  N
Sbjct: 193 CVTSNVVYREVFHN 152


>BI271341 
          Length = 468

 Score = 75.1 bits (183), Expect = 6e-14
 Identities = 40/98 (40%), Positives = 61/98 (61%)
 Frame = +1

Query: 221 ILPVISKGSRSEIVGSAINSSYLWKHCKVMKLTVNMSLQNATSTSSATEIKEFVDWLLQV 280
           ILPVI +GSRS+I+ + INSS +  HC+V++L  NM LQ    +S+  E ++F   +L+V
Sbjct: 10  ILPVIPRGSRSDIIHATINSSCI*DHCQVVRLKKNMWLQQNGQSSNDPEFEQFSK*ILKV 189

Query: 281 GDGTVKTIDEEETLIEIPPDLLIEQCKEPLLELVNFAY 318
           GDG +   ++    I+IPP+LLI    + L  +V   Y
Sbjct: 190 GDGKIYEPNDSYADIDIPPELLISNYDDSLQTIVQSTY 303


>TC91093 weakly similar to PIR|T01873|T01873 hypothetical protein T24M8.10 -
           Arabidopsis thaliana, partial (11%)
          Length = 701

 Score = 71.6 bits (174), Expect = 7e-13
 Identities = 45/145 (31%), Positives = 70/145 (48%)
 Frame = +3

Query: 269 EIKEFVDWLLQVGDGTVKTIDEEETLIEIPPDLLIEQCKEPLLELVNFAYPKLAHNLQKS 328
           E K F + L     G +   ++    ++ PP        +P+  +V   YP L       
Sbjct: 306 EFKTFAEILT----GKMSEPNDSYAEVDTPPG-------DPIDAIVQSTYPNLVSQYNNE 452

Query: 329 SFFQERAILAPTLESLEEINNFMLAMIPGDETEYLSCDTPCKSDEDSGDNAE*FTSEVLN 388
            F Q RAIL  T E +++IN+++L +IPG+E    S +    +D  + D       E L 
Sbjct: 453 QFLQSRAILTSTDEVVDQINDYVLKLIPGEERVIYSANRSEVNDVQAFDA---IPPEFLQ 623

Query: 389 DFKCSEIPNHAIKLKAGVPIMLIRN 413
             K S++PNH + LK G PIML+R+
Sbjct: 624 SLKTSDLPNHKLTLKVGTPIMLLRD 698


>CB892166 similar to GP|20197614|gb unknown protein {Arabidopsis thaliana},
           partial (3%)
          Length = 748

 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 23/46 (50%), Positives = 31/46 (67%)
 Frame = -1

Query: 497 YLPRPVFTHGQPYVALYRVKSRKMLKMLIIDDE*VVSNTTRNVVYQ 542
           +  R VF+HGQ YVA+ RV SR  LK+L+ID+     + T NVVY+
Sbjct: 289 FYDREVFSHGQLYVAISRVSSRNGLKILMIDENGDCIDNTTNVVYK 152


>AJ497367 similar to GP|14140286|gb putative helicase {Oryza sativa (japonica
           cultivar-group)}, partial (1%)
          Length = 543

 Score = 44.7 bits (104), Expect = 9e-05
 Identities = 23/45 (51%), Positives = 32/45 (71%)
 Frame = +1

Query: 503 FTHGQPYVALYRVKSRKMLKMLIIDDE*VVSNTTRNVVYQEVLDN 547
           F++G+ YVA+ RV SRK LK+L+  ++    NTT NVVY+EV  N
Sbjct: 19  FSNGKLYVAVSRVTSRKGLKILLAHEDGNCMNTTSNVVYKEVFRN 153


>TC84660 similar to PIR|D86481|D86481 hypothetical protein AAG28292.1
           [imported] - Arabidopsis thaliana, partial (1%)
          Length = 1009

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +2

Query: 490 SLSHVGLYLPRPVFTHGQPYVALYRVKSRK 519
           S++  G+YLP+P+F HG  YVAL RV SRK
Sbjct: 68  SMATKGMYLPQPIF*HG*LYVALSRVTSRK 157


>TC80146 
          Length = 476

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 16/35 (45%), Positives = 26/35 (73%)
 Frame = -3

Query: 475 VTLCFVMTINKSQGQSLSHVGLYLPRPVFTHGQPY 509
           + + +  TINKS+ QSLS++ +YL RP+F+H + Y
Sbjct: 471 IQIPYFKTINKSR*QSLSYMKIYLSRPIFSHEEMY 367


>TC83215 weakly similar to PIR|F96713|F96713 unknown protein T6L1.9
           [imported] - Arabidopsis thaliana, partial (21%)
          Length = 731

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 19/152 (12%)
 Frame = +2

Query: 216 DDFGQILPVISKGSRSEIVGSAINSSYLWKHCKVMKLTVNMSLQNATSTSSATE------ 269
           D+  ++L  ISK     +  +  N +   +    +KL + + ++   +  +A E      
Sbjct: 149 DNATEVLMGISKSIMGRLQVTEFNLNGYMQRENELKLNIQILIEQLKAKDAALEKNGRCN 328

Query: 270 -----IKEFVDWLLQVGDGTVKTIDEEETLIEIPPDLLIEQ---CKEPLLELVNFAYP-- 319
                I+E  + +L + +  +K ++EE+   E+  + L E+   C E L+E+ NFA    
Sbjct: 329 VNVDDIQENTE-VLDLRE-KMKILEEEQKNFEVQINSLSEENEACHEQLIEIENFAESLK 502

Query: 320 ---KLAHNLQKSSFFQERAILAPTLESLEEIN 348
               +A N  +S+  +   +    LE  EE+N
Sbjct: 503 ESIDIAXNRAESAEAKVTQLTETNLELTEELN 598


>TC77780 weakly similar to GP|23237921|dbj|BAC16494. contains ESTs
           D41667(S4320) AU033165(S4320)~mucin-like protein,
           partial (13%)
          Length = 1215

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 28  CLPYPKFSEIHNFEVIFVADELN-YNRAEMVKIHDEFV 64
           C  +PKF    N ++IF+  E N   + +M+K ++ F+
Sbjct: 696 CFRHPKFPSFTNHKIIFIFGECNTIGKGQMIKDNNGFI 583


>BG453139 similar to GP|5817349|gb| putative NBS-LRR type disease resistance
           protein {Pisum sativum}, partial (65%)
          Length = 638

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -2

Query: 59  IHDEFVSSLTSEQEIFYKNVLDDV--LSDNS*FFFLYGFGGTGKTFVWNILY 108
           +   F+    S++E     +L DV  ++DN     ++G GG GKT +  +LY
Sbjct: 454 VDQSFMVGRKSDKEKLTNMLLSDVSTVNDNINVVSIFGMGGVGKTALAQLLY 299


>TC93266 similar to PIR|T45709|T45709 hypothetical protein F1P2.40 -
           Arabidopsis thaliana, partial (51%)
          Length = 855

 Score = 28.1 bits (61), Expect = 9.1
 Identities = 21/63 (33%), Positives = 34/63 (53%)
 Frame = +1

Query: 217 DFGQILPVISKGSRSEIVGSAINSSYLWKHCKVMKLTVNMSLQNATSTSSATEIKEFVDW 276
           D+  I+P  SKG +S +           ++C+V++ TVN S  N T  S +  I+E  ++
Sbjct: 376 DYDHIVPY-SKGGQSTL-----------ENCQVLQATVNRSKGNRTDISKSDLIQE--EF 513

Query: 277 LLQ 279
           LLQ
Sbjct: 514 LLQ 522


>TC77427 similar to GP|16648995|gb|AAL24349.1 putative protein {Arabidopsis
            thaliana}, partial (84%)
          Length = 1950

 Score = 28.1 bits (61), Expect = 9.1
 Identities = 20/47 (42%), Positives = 24/47 (50%)
 Frame = +3

Query: 433  KYIIVVTVLNENKMGETTFIPRMSLTPSNSDIPFKFQRRQFSVTLCF 479
            KYIIV+ +L   K       P  S +PS+S IPF  Q   F  TL F
Sbjct: 1284 KYIIVLQLLL*KKKKIYPLFPSPSPSPSHSSIPFLLQ--VF*FTLAF 1418


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.322    0.139    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,969,957
Number of Sequences: 36976
Number of extensions: 210334
Number of successful extensions: 924
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of query: 547
length of database: 9,014,727
effective HSP length: 101
effective length of query: 446
effective length of database: 5,280,151
effective search space: 2354947346
effective search space used: 2354947346
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)