TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0030.2
         (82 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC93777 similar to GP|19424104|gb|AAL87344.1 putative ribosomal ...   160  8e-41
TC76882 similar to GP|19424104|gb|AAL87344.1 putative ribosomal ...   155  2e-39
BQ143818 similar to GP|19424104|gb|A putative ribosomal protein ...   125  2e-30
TC81378 homologue to GP|19071628|gb|AAL84295.1 serine/threonine ...    24  9.2

>TC93777 similar to GP|19424104|gb|AAL87344.1 putative ribosomal protein
          S21 {Arabidopsis thaliana}, partial (98%)
          Length = 416

 Score =  160 bits (405), Expect = 8e-41
 Identities = 76/81 (93%), Positives = 79/81 (96%)
 Frame = +3

Query: 1  MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRA 60
          MQNEEGQITELYIPRKCSATNRLITAKDHASVQIN+GHLDESGVYNGQFST+ALCG+ RA
Sbjct: 3  MQNEEGQITELYIPRKCSATNRLITAKDHASVQINVGHLDESGVYNGQFSTFALCGFTRA 182

Query: 61 QGDADSAIDRLWQKKKAEIKQ 81
          QGDADS IDRLWQKKKAEIKQ
Sbjct: 183QGDADSGIDRLWQKKKAEIKQ 245


>TC76882 similar to GP|19424104|gb|AAL87344.1 putative ribosomal protein S21
           {Arabidopsis thaliana}, partial (98%)
          Length = 669

 Score =  155 bits (393), Expect = 2e-39
 Identities = 73/81 (90%), Positives = 77/81 (94%)
 Frame = +3

Query: 1   MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRA 60
           MQNEEGQITELYIPRKCSATNRLITAKDHASVQ+NIGHLDESGVYNG FST+ALCG+ RA
Sbjct: 135 MQNEEGQITELYIPRKCSATNRLITAKDHASVQLNIGHLDESGVYNGHFSTFALCGFTRA 314

Query: 61  QGDADSAIDRLWQKKKAEIKQ 81
           QGDADS IDRLWQKKK E+KQ
Sbjct: 315 QGDADSGIDRLWQKKKTELKQ 377


>BQ143818 similar to GP|19424104|gb|A putative ribosomal protein S21
          {Arabidopsis thaliana}, partial (80%)
          Length = 728

 Score =  125 bits (315), Expect = 2e-30
 Identities = 58/66 (87%), Positives = 62/66 (93%)
 Frame = +2

Query: 16 KCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRAQGDADSAIDRLWQKK 75
          KCSATNRLITAKDHASVQ+NIGHLDESGVYNG FST+ALCG+ RAQGDADS IDRLWQKK
Sbjct: 11 KCSATNRLITAKDHASVQLNIGHLDESGVYNGHFSTFALCGFTRAQGDADSGIDRLWQKK 190

Query: 76 KAEIKQ 81
          K E+KQ
Sbjct: 191KTELKQ 208


>TC81378 homologue to GP|19071628|gb|AAL84295.1 serine/threonine protein
           phosphatase PP2A-4 catalytic subunit, partial (28%)
          Length = 768

 Score = 24.3 bits (51), Expect = 9.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 11  LYIPRKCSATNRLITAKDHASVQIN 35
           +Y+P K S   +L+  KD   +Q+N
Sbjct: 511 VYMPTKASPAPQLLPCKDSIIIQVN 437


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.315    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,171,305
Number of Sequences: 36976
Number of extensions: 19026
Number of successful extensions: 80
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of query: 82
length of database: 9,014,727
effective HSP length: 58
effective length of query: 24
effective length of database: 6,870,119
effective search space: 164882856
effective search space used: 164882856
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)