BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0027.9
(1611 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BQ148771 141 2e-33
BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-li... 101 3e-21
BG647708 weakly similar to GP|13786450|gb| putative reverse tran... 97 4e-20
BG585866 76 9e-14
BE248682 similar to GP|18568269|gb putative gag-pol polyprotein ... 70 9e-12
BG587113 weakly similar to PIR|A84888|A8 hypothetical protein At... 67 4e-11
BG585499 60 5e-09
BF647389 60 5e-09
BG586862 50 9e-06
TC91765 weakly similar to GP|19881779|gb|AAM01180.1 Putative ret... 49 1e-05
TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imp... 48 4e-05
TC77455 similar to GP|22335695|dbj|BAC10549. nine-cis-epoxycarot... 47 5e-05
TC83226 weakly similar to PIR|G86419|G86419 probable reverse tra... 45 2e-04
BG456581 44 4e-04
TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non... 35 6e-04
BG584442 43 9e-04
TC82948 39 0.012
BG646730 39 0.012
TC81772 33 0.90
TC93101 32 2.0
>BQ148771
Length = 680
Score = 141 bits (356), Expect = 2e-33
Identities = 81/238 (34%), Positives = 116/238 (48%)
Frame = -3
Query: 1279 KVRKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGST 1338
+V L+ WK + LS A RV+L +S + ++P Y M TT IP +EI++L R F+WG T
Sbjct: 588 QVHVMLANWKANHLSLARRVTLAKSVIEAVPLYPMMTTIIPKACIEEIQKLQRKFVWGDT 409
Query: 1339 ADHRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYK 1398
R+ H + W+T+ PK GLG L +N+A + KL W+I + +SL T+V++ KY+
Sbjct: 408 EVSRRYHAVGWETMSKPKTIYGLGLRRLDVMNKACIMKLGWSIYSGSNSLCTEVMRGKYQ 229
Query: 1399 FNPGLRAPPLPKPPDSPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSF 1458
+ L L KP DS WK + K WP +E+ +
Sbjct: 228 RSESLEEIFLEKPTDSSLWKALVKLWPEIERNL--------------------------- 130
Query: 1459 MPDVHSEAWNANLPVAAFLENGDWNWNSLSQLLPDDVCRRIRALNPPHLERGEDEPFW 1516
V S NG+WNW L Q LP DV +RI A+ PH G D+ W
Sbjct: 129 ---VDS--------------NGNWNWEKLKQWLPFDVLQRIMAIATPHENLGSDKLIW 7
>BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-like protein
{Arabidopsis thaliana}, partial (18%)
Length = 789
Score = 101 bits (251), Expect = 3e-21
Identities = 57/156 (36%), Positives = 81/156 (51%)
Frame = -3
Query: 1105 GFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERLALTIK 1164
GF +I I C+S+ S G PSRG+RQGDP+SPYLF+LC E L+ +
Sbjct: 490 GFHGIWISWIMECVSTVSYSFLINGGPQGRVLPSRGLRQGDPLSPYLFILCTEVLSGLCQ 311
Query: 1165 DACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQKVSP 1224
A G KV R+ P I+HLLFADD + F +++ ++ I+ + ASG+ ++
Sbjct: 310 QALRKGTLPGVKVARNCPPINHLLFADDTMFFGKSNASSCAILLSIMDKYRAASGRCIN* 131
Query: 1225 PKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLG 1260
KS + FS D++ L I K G YLG
Sbjct: 130 TKSAITFSSKTSQAIIDRVKGELKIAKEGGTGKYLG 23
>BG647708 weakly similar to GP|13786450|gb| putative reverse transcriptase
{Oryza sativa}, partial (9%)
Length = 708
Score = 97.4 bits (241), Expect = 4e-20
Identities = 49/114 (42%), Positives = 74/114 (63%)
Frame = +1
Query: 1137 PSRGVRQGDPISPYLFVLCIERLALTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLF 1196
P +G+RQGDP+SPYLF+LC L+ +K + +V RS P I+HLLFADD +LF
Sbjct: 4 PEKGLRQGDPLSPYLFILCANVLSGLLKREGNKQNLHGIQVARSDPKITHLLFADDSLLF 183
Query: 1197 AEASVDQAILIDEILHNFCEASGQKVSPPKSRVFFSKNVHDGKADQIVHALGIQ 1250
A A++ +A I ++LH++ ASGQ V+ KS V +S+NV + + + I + I+
Sbjct: 184 ARANLTEAATIMQVLHSYQSASGQLVNFEKSEVSYSQNVPNQEKEMICQQIAIK 345
>BG585866
Length = 828
Score = 76.3 bits (186), Expect = 9e-14
Identities = 54/193 (27%), Positives = 86/193 (43%), Gaps = 7/193 (3%)
Frame = +3
Query: 1426 IMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSFMP--DVHSEAWNANLPVAAFLENGDWN 1483
+++ G W G+G SFW NW ++G + + P D+H + +L V G +
Sbjct: 102 VLKSGYTWRAGSG-NSSFWYTNW-SSLGLLGTQAPFVDIH----DLHLTVKDVFTTGGQH 263
Query: 1484 WNSLSQLLPDDVCRRIRALNPPHLERGE---DEPFWGLSPDGAFSLNSVFL-ILLPPPPV 1539
SL +LP D+ +N HL D W + +G ++ S + IL V
Sbjct: 264 TQSLYTILPTDIAE---VINNTHLNFNASIGDAYIWPHNSNGVYTAKSGYSWILSQTETV 434
Query: 1540 SYEKT-FEHVWNFRGPPRAQAVLWKTAHGRLLTNKERVKRNMTYDSTCPRCLEEEESVMH 1598
+Y + + +W + P + + LW H + T RNM + C RC E EES H
Sbjct: 435 NYNNSSWSWIWRLKIPEKYKFFLWLACHNAVPTLSLLNHRNMVNSAICSRCGEHEESFFH 614
Query: 1599 AIRDCECVKHVWN 1611
+RDC K +W+
Sbjct: 615 CVRDCRFSKIIWH 653
>BE248682 similar to GP|18568269|gb putative gag-pol polyprotein {Zea mays},
partial (1%)
Length = 441
Score = 69.7 bits (169), Expect = 9e-12
Identities = 42/130 (32%), Positives = 70/130 (53%)
Frame = +3
Query: 1133 ESFNPSRGVRQGDPISPYLFVLCIERLALTIKDACSDGRWKAFKVGRSGPSISHLLFADD 1192
E + RG++QGDP++P+LF+L E ++ +K+A + ++ F V R G +SHL +ADD
Sbjct: 6 EEISVQRGLKQGDPLAPFLFLLVAEGISGLMKNAVNRNLFQGFDVKRGGTRVSHLQYADD 185
Query: 1193 VVLFAEASVDQAILIDEILHNFCEASGQKVSPPKSRVFFSKNVHDGKADQIVHALGIQKT 1252
+ +VD + +L F ASG KV+ KS + NV + L ++
Sbjct: 186 TLCIGMPTVDNLWTLKALLQGFEMASGLKVNFHKSSL-IGINVPRDFMEAACRFLNCREE 362
Query: 1253 TNLGMYLGVP 1262
+ +YLG+P
Sbjct: 363 SIPFIYLGLP 392
>BG587113 weakly similar to PIR|A84888|A8 hypothetical protein At2g45230
[imported] - Arabidopsis thaliana, partial (10%)
Length = 767
Score = 67.4 bits (163), Expect = 4e-11
Identities = 49/219 (22%), Positives = 91/219 (41%), Gaps = 22/219 (10%)
Frame = -3
Query: 1414 SPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSFMPDVHS--------- 1464
S W+ I A ++++G K +GNG + W + +T+ P+ HS
Sbjct: 735 SYAWRSIHSAQHLIKQGAKVIIGNGENTNIWEREMAWKLTCVTNH-PNKHSSRAY*APTL 559
Query: 1465 ---EAWNANLPVAAFLENGDWNWNSLSQLLPDDVCRRIRALNPPHLERGEDEPFWGLSPD 1521
E ++ P+ + N N ++ + P+ R+I +++P GED W S
Sbjct: 558 YGYEGCRSDDPMRR-----ERNANLINSIFPEGTRRKILSIHPQG-PIGEDSYSWEYSKS 397
Query: 1522 GAFSLNSVFLILL----------PPPPVSYEKTFEHVWNFRGPPRAQAVLWKTAHGRLLT 1571
G +S+ S + + S + ++ VW + P+ + LW+ L T
Sbjct: 396 GHYSVKSGYYVQTNIIAAANQRGTVDQPSLDDLYQRVWKYNTSPKVRHFLWRCISNSLPT 217
Query: 1572 NKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
R+++ D +C RC E E+V H + C + +W
Sbjct: 216 AANMRSRHISKDGSCSRCGMESETVNHILFQCPYARLIW 100
>BG585499
Length = 792
Score = 60.5 bits (145), Expect = 5e-09
Identities = 25/63 (39%), Positives = 35/63 (54%)
Frame = +3
Query: 1548 VWNFRGPPRAQAVLWKTAHGRLLTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVK 1607
+W +RGP R Q +W AHG +LTN R + +TCP C +E+V+H + DC
Sbjct: 234 LWGWRGPHRTQTFMWLVAHGCILTNYRRSRWGTRVLATCPCCGNADETVLHVLCDCRPAS 413
Query: 1608 HVW 1610
VW
Sbjct: 414 QVW 422
>BF647389
Length = 404
Score = 60.5 bits (145), Expect = 5e-09
Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Frame = +2
Query: 1258 YLGVPLLHSILSKENFNFLIDKVRK---KLSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQ 1314
YLGVPL L ++I +V+K ++ LS+AG + L + L + Y Q
Sbjct: 44 YLGVPLSSKKL------YVIQRVKKIICRIEN*SSKLLSYAGSLQLIKIVLFGVQPYWSQ 205
Query: 1315 TTPIPIGVCQEIERLCRNFIWGSTADHRKCHLISWDTICSPKDQGGLGFCDLRTINQAYM 1374
+P V + I+ CR F+ + K LI+ + IC PK GG DL+ NQ +
Sbjct: 206 VFVLP*KVIKLIQTTCRIFL*TGKSGTSKRALIAREHICLPKTAGGWNVIDLKVXNQTAI 385
Query: 1375 AKLAWN 1380
KL WN
Sbjct: 386 CKLXWN 403
>BG586862
Length = 804
Score = 49.7 bits (117), Expect = 9e-06
Identities = 22/65 (33%), Positives = 31/65 (46%)
Frame = -1
Query: 1546 EHVWNFRGPPRAQAVLWKTAHGRLLTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCEC 1605
E VW + PR ++ LW+ H L E KR + CPRC + E+V H +CE
Sbjct: 660 EKVWGIKTIPRHKSFLWRLLHNALPVKDELHKRGIRCSLLCPRCESKIETVQHLFLNCEV 481
Query: 1606 VKHVW 1610
+ W
Sbjct: 480 TQKEW 466
>TC91765 weakly similar to GP|19881779|gb|AAM01180.1 Putative retroelement
{Oryza sativa (japonica cultivar-group)}, partial (1%)
Length = 625
Score = 49.3 bits (116), Expect = 1e-05
Identities = 22/69 (31%), Positives = 37/69 (52%)
Frame = +2
Query: 1117 CISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERLALTIKDACSDGRWKAFK 1176
C+ S+ + + + PSRG++QGD +SPY+F++C+E L+ I A G
Sbjct: 104 CVESNDYYVLVNNDAVDPIIPSRGLQQGDHLSPYIFIICVEGLSFLIPHAKERGDTHGTS 283
Query: 1177 VGRSGPSIS 1185
+ R P +S
Sbjct: 284 I*RGAPPVS 310
Score = 37.4 bits (85), Expect = 0.047
Identities = 29/95 (30%), Positives = 42/95 (43%), Gaps = 4/95 (4%)
Frame = +3
Query: 1172 WKA----FKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQKVSPPKS 1227
W+A F R G LLF + A ++ IL + E SG+ +S KS
Sbjct: 222 WRACPS*FPTPRRGAIPMALLFEGAPLRSLRVEEHHAQIMKNILILYEEDSGKAISLRKS 401
Query: 1228 RVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVP 1262
++ S+NV D I + LG+Q YLG+P
Sbjct: 402 *IYCSRNVPDILKTSITYILGVQFMLGTCKYLGLP 506
>TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imported] -
Arabidopsis thaliana, partial (6%)
Length = 951
Score = 47.8 bits (112), Expect = 4e-05
Identities = 35/135 (25%), Positives = 64/135 (46%)
Frame = +2
Query: 1184 ISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQKVSPPKSRVFFSKNVHDGKADQI 1243
+SHL FA+D +L + + L F SG KV+ KS + N+ +
Sbjct: 542 VSHLQFANDTLLLETKNWANIRALRAALVIF*AMSGLKVNFHKSGLV-CVNIAPSWLSEA 718
Query: 1244 VHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKVRKKLSGWKVSTLSFAGRVSLTQS 1303
L + +YLG+P+ + + ++++++ +L+GW LSF GR+ L +S
Sbjct: 719 ASVLSWKVGKVPFLYLGMPIEGNSRRLSFWEPIVNRIKARLTGWNSRFLSFGGRLVLLKS 898
Query: 1304 CLLSLPAYVMQTTPI 1318
L SL Y + ++ +
Sbjct: 899 VLTSLSVYALPSSKL 943
>TC77455 similar to GP|22335695|dbj|BAC10549. nine-cis-epoxycarotenoid
dioxygenase1 {Pisum sativum}, partial (43%)
Length = 1865
Score = 47.4 bits (111), Expect = 5e-05
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = -3
Query: 1353 CSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKY 1397
C P+ +GGLG D+R +N + +AK W +L D+ SLW +VL+ Y
Sbjct: 969 CLPRCKGGLGVRDIRLVNVSLLAKWWWRLLQDQSSLWKEVLEDIY 835
Score = 43.1 bits (100), Expect = 9e-04
Identities = 46/200 (23%), Positives = 75/200 (37%), Gaps = 25/200 (12%)
Frame = -2
Query: 1435 LGNGIKVSFWRDNWIPNMGPITSFMPDVH----------SEAWNANLPVAAF------LE 1478
+G+G FW+D W ++ P+ P + W+ N + LE
Sbjct: 700 VGDGRSSFFWKDAWDSSV-PLRESFPRAFFPYRLLKMGCGDLWDMNAEGVRWRLYWRRLE 524
Query: 1479 NGDWNWNSLSQLLPDDVCRRIRALNPPHLERGEDEPFWGLSPDGAFSLNSVFLIL----L 1534
+W L +LL L L D W +G FS+NS + +L L
Sbjct: 523 LFEWEKERLLELL--------GRLEGVVLRYWADIWVWKPDKEGVFSVNSCYFLLQNLRL 368
Query: 1535 PPPPVSYEK--TFEHVWNFRGPPRAQAVLWKTAHGRLLTNKERVKRNMTYDSTCPRCLE- 1591
+SYE+ F +W + P + A W R+ T KR + RC+
Sbjct: 367 LEDRLSYEEEVIFRELWKSKAPAKVLAFSWTLFLDRIPTMVNLGKRRLLRVEDSKRCVFC 188
Query: 1592 --EEESVMHAIRDCECVKHV 1609
++E+V+H C+ + V
Sbjct: 187 GCQDETVVHLFLHCDVISKV 128
>TC83226 weakly similar to PIR|G86419|G86419 probable reverse transcriptase
100033-105622 [imported] - Arabidopsis thaliana, partial
(2%)
Length = 885
Score = 45.4 bits (106), Expect = 2e-04
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Frame = +3
Query: 1516 WGLSPDGAFSLNSVFLIL-------LPPPPVSYEKT--FEHVWNFRGPPRAQAVLWKTAH 1566
W +P G +S+ S + L + S ++T ++ +W+ PR + +LW+ +
Sbjct: 6 WMHNPTGIYSVKSGYNTLRTWQTQQINNTSTSSDETLIWKKIWSLHTIPRHKVLLWRILN 185
Query: 1567 GRLLTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
L KR + CPRC + E++ H C K VW
Sbjct: 186 DSLPVRSSLRKRGIQCYPLCPRCHSKTETITHLFMSCPLSKRVW 317
>BG456581
Length = 683
Score = 44.3 bits (103), Expect = 4e-04
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +2
Query: 1548 VWNFRGPPRAQAVLWKTAHGRLLTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVK 1607
+WN PP + W+ AH RL T+ R S C CLE+ E+ H C+ V
Sbjct: 80 IWNSCIPPSHSFICWRLAHDRLPTDDNLSSRGCALVSMCSFCLEQVETSDHLFLRCKFVV 259
Query: 1608 HVWN 1611
+W+
Sbjct: 260 TLWS 271
>TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non-LTR
retroelement reverse transcriptase {Oryza sativa
(japonica cultivar-group)}, partial (2%)
Length = 1262
Score = 35.4 bits (80), Expect(2) = 6e-04
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 1360 GLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKY 1397
GLG + N + + K W +L DK+ LW +VLKA+Y
Sbjct: 31 GLG---VGAFNLSLLGKWCWRLLVDKEGLWHRVLKARY 135
Score = 34.7 bits (78), Expect = 0.31
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 2/98 (2%)
Frame = +2
Query: 1516 WGLSPDGAFSLNSVFLILLPPPPVSYEKTFEHVWNFRGPPRAQAVLWKTAHGRLLTNKER 1575
W L P +S+ + + +S + VW+ P + +W+ RL T
Sbjct: 530 WLLDPVNGYSVKVFYRYITSTGHISDRSLVDDVWHKHIPSKVSLFVWRLLRNRLPTKDNL 709
Query: 1576 VKRN--MTYDSTCPRCLEEEESVMHAIRDCECVKHVWN 1611
V R + ++ C + ES H C +W+
Sbjct: 710 VHRGVLLATNAACVCGCVDSESTTHLFLHCNVFCSLWS 823
Score = 27.3 bits (59), Expect(2) = 6e-04
Identities = 13/42 (30%), Positives = 18/42 (41%), Gaps = 10/42 (23%)
Frame = +3
Query: 1417 WKGICKA----------WPIMEKGVKWTLGNGIKVSFWRDNW 1448
WK ICK W E+ ++ +G+G FW D W
Sbjct: 186 WKTICKVREGVGEGVGNW--FEENIRMVVGDGRDAFFWYDTW 305
>BG584442
Length = 775
Score = 43.1 bits (100), Expect = 9e-04
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 1/151 (0%)
Frame = +1
Query: 1242 QIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKVRKKLSGWKVSTLSFAGRVSLT 1301
QI+ A + T + Y V HS + F+ KK++ + LS +
Sbjct: 280 QILRASMLPITMSFKCYPQVIRQHSAT*RTKFD-------KKINF*RNKCLSKVM*EVMI 438
Query: 1302 QSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTADHRK-CHLISWDTICSPKDQGG 1360
+ L S+ +YVM + EIE++ F W ++RK H +S + + K+ GG
Sbjct: 439 KYALQSISSYVMSIFLLLNSQVDEIEKIMNTFSWVHVGENRKGMHWMS*EKLFVHKNYGG 618
Query: 1361 LGFCDLRTINQAYMAKLAWNILADKDSLWTQ 1391
+GF D T N + K + L ++ +L+ +
Sbjct: 619 MGFTDFTTFNIPMLGKQV*SFLLNRTTLFLE 711
>TC82948
Length = 705
Score = 39.3 bits (90), Expect = 0.012
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 1347 ISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKD 1386
+SW+ +C P +G LG L +N+A KL W+++ K+
Sbjct: 267 VSWEKVCRPIKEGSLGIRSLSKLNEALNLKLCWDMMISKE 386
>BG646730
Length = 799
Score = 39.3 bits (90), Expect = 0.012
Identities = 12/38 (31%), Positives = 23/38 (59%)
Frame = +1
Query: 1414 SPTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPN 1451
S W+ + +++ G +W++ NG V W+D+W+PN
Sbjct: 400 SYAWRSMFNIKDVIDLGSRWSISNGQNVRIWKDDWLPN 513
>TC81772
Length = 982
Score = 33.1 bits (74), Expect = 0.90
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -2
Query: 1426 IMEKGVKWTLGNGIKVSFWRDNWIPNM 1452
++E+G W +G+G ++ W D+W+ M
Sbjct: 666 VLEEGHHWKIGDGSSINIWTDHWLSGM 586
>TC93101
Length = 675
Score = 32.0 bits (71), Expect = 2.0
Identities = 15/45 (33%), Positives = 18/45 (39%)
Frame = -1
Query: 1566 HGRLLTNKERVKRNMTYDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
H L E KR + CPRC E+ H CE + VW
Sbjct: 672 HTTLPVRXELNKRGVNCPPLCPRCYFNLETTNHIFMSCERTQRVW 538
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.341 0.150 0.537
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,546,890
Number of Sequences: 36976
Number of extensions: 1086184
Number of successful extensions: 8446
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 4360
Number of HSP's successfully gapped in prelim test: 375
Number of HSP's that attempted gapping in prelim test: 3484
Number of HSP's gapped (non-prelim): 5501
length of query: 1611
length of database: 9,014,727
effective HSP length: 109
effective length of query: 1502
effective length of database: 4,984,343
effective search space: 7486483186
effective search space used: 7486483186
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0027.9