BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0026.4
(161 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BQ141183 weakly similar to GP|12654765|gb| Similar to erythrobla... 30 0.33
TC88122 similar to GP|17065066|gb|AAL32687.1 Unknown protein {Ar... 28 1.6
TC78136 similar to GP|22652297|gb|AAN03675.1 putative nucleopori... 27 3.6
TC86718 similar to GP|15010742|gb|AAK74030.1 At1g54320/F20D21_50... 27 4.7
TC92798 similar to GP|21952785|dbj|BAC06201. contains EST AU0580... 26 6.1
CA921004 weakly similar to GP|7110148|gb DNA repair-recombinatio... 26 6.1
TC93192 weakly similar to PIR|B96736|B96736 unknown protein F23N... 26 8.0
TC87267 similar to PIR|T06242|T06242 aspartate kinase (EC 2.7.2.... 26 8.0
>BQ141183 weakly similar to GP|12654765|gb| Similar to erythroblast
macrophage protein {Homo sapiens}, partial (10%)
Length = 640
Score = 30.4 bits (67), Expect = 0.33
Identities = 15/54 (27%), Positives = 31/54 (56%)
Frame = +3
Query: 95 KAALKQADPEGSVGALKALVDKLSTTAREELDIRQEKSRLETQQEDVLRRMEPL 148
KAA + DP S+ +L A++ K+ R+ +++E++RL + L+ ++ L
Sbjct: 267 KAASQTTDPTASLDSLDAMIAKMHGLKRKLSSLQEEEARLHKAAKARLQHLQDL 428
>TC88122 similar to GP|17065066|gb|AAL32687.1 Unknown protein {Arabidopsis
thaliana}, partial (91%)
Length = 1393
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +2
Query: 81 EHQIDEKMEEFEALKAALKQ-----ADPEGSVGALKALVDKLSTTAREELDIRQEKSRLE 135
E + EK EFE++++ LKQ E + AL+ + ARE + + E+ + E
Sbjct: 632 ERREKEKRREFESVRSCLKQRGLKKTTRENVLLALRKAEKEEERRARERIKQKLEEDKAE 811
Query: 136 TQQEDVLRRMEPLRAR 151
+++ L EP A+
Sbjct: 812 RRRKLGLAPEEPSTAK 859
>TC78136 similar to GP|22652297|gb|AAN03675.1 putative nucleoporin PRECOZ
{Arabidopsis thaliana}, partial (48%)
Length = 2532
Score = 26.9 bits (58), Expect = 3.6
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +3
Query: 21 WELHSSL-----SLAEELTGLINQLLSRNIIASVKTPLQEFLSLLREAVPLYEEHRELTA 75
WEL + + S+ L G N + + + S Q+F+S L E++ ++ + A
Sbjct: 1800 WELGAGIYISFYSMRNSLQGDANTMTELDSLQSKNAACQDFVSQLNESLAVWGYRLPIDA 1979
Query: 76 RVFFAE 81
RV +++
Sbjct: 1980 RVVYSK 1997
>TC86718 similar to GP|15010742|gb|AAK74030.1 At1g54320/F20D21_50 {Arabidopsis
thaliana}, partial (90%)
Length = 1572
Score = 26.6 bits (57), Expect = 4.7
Identities = 13/40 (32%), Positives = 24/40 (59%)
Frame = +2
Query: 28 SLAEELTGLINQLLSRNIIASVKTPLQEFLSLLREAVPLY 67
S + L GL+ +++S ++ S PL+++ S R +PLY
Sbjct: 1076 SYCQLLAGLVGRMISLALLIS---PLEDYASFCRWLLPLY 1186
>TC92798 similar to GP|21952785|dbj|BAC06201. contains EST
AU058082(E30867)~unknown protein {Oryza sativa
(japonica cultivar-group)}, partial (36%)
Length = 511
Score = 26.2 bits (56), Expect = 6.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 36 LINQLLSRNIIASVKTPLQEFLSLLREAVPLYEEHREL 73
LI+ L I + P Q+F S +P Y+EH L
Sbjct: 60 LISMFLIMAIFEHLFKPTQQFSSTPESMLPTYQEHHSL 173
>CA921004 weakly similar to GP|7110148|gb DNA repair-recombination protein
{Arabidopsis thaliana}, partial (11%)
Length = 809
Score = 26.2 bits (56), Expect = 6.1
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = +1
Query: 66 LYEEHRELTARVFFAEHQIDEKMEEFEALKAALKQADPEGSVGALKALVDKLSTTAREEL 125
L E REL R+ Q DE+ E + + K + E + AL + ++T ++E
Sbjct: 367 LDERERELQIRLEGKIKQRDEREFELKKSEIENKALNVEQKIRALNREMLTMATDSKERE 546
Query: 126 DIRQEKSRLETQQE 139
+ K LET+++
Sbjct: 547 KLSLMKGDLETKKK 588
>TC93192 weakly similar to PIR|B96736|B96736 unknown protein F23N20.14
[imported] - Arabidopsis thaliana, partial (36%)
Length = 677
Score = 25.8 bits (55), Expect = 8.0
Identities = 13/32 (40%), Positives = 17/32 (52%)
Frame = +1
Query: 41 LSRNIIASVKTPLQEFLSLLREAVPLYEEHRE 72
LS +I SVK + L++E V Y HRE
Sbjct: 367 LSSSIHESVKQVVDSSFRLMKETVSFYGSHRE 462
>TC87267 similar to PIR|T06242|T06242 aspartate kinase (EC 2.7.2.4) /
homoserine dehydrogenase (EC 1.1.1.3) precursor -
soybean, partial (24%)
Length = 817
Score = 25.8 bits (55), Expect = 8.0
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 100 QADPEGSVGALKALVDKLSTTAREELDIRQEKSRLETQQEDVLRRMEPLRARY 152
Q+ E + +L A+++K S TA + LD L ED+ LRA Y
Sbjct: 468 QSRDESYISSLDAVLEKHSATAHDILDGETLAIFLSKLHEDISNLKAMLRAIY 626
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.317 0.132 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,615,033
Number of Sequences: 36976
Number of extensions: 36758
Number of successful extensions: 195
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of query: 161
length of database: 9,014,727
effective HSP length: 88
effective length of query: 73
effective length of database: 5,760,839
effective search space: 420541247
effective search space used: 420541247
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0026.4