TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0026.15
         (145 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC88323 similar to PIR|T08917|T08917 auxin response factor 9 - A...    28  0.99
TC86941 similar to GP|15294290|gb|AAK95322.1 AT5g02240/T7H20_290...    27  3.8
TC78007 PIR|T09261|T09261 JUN kinase-activation-domain-binding p...    26  4.9
TC90810 similar to GP|7339693|dbj|BAA92898.1 ESTs C72979(E2587) ...    26  4.9
BI263347                                                               25  8.4
TC84406 similar to GP|12039327|gb|AAG46115.1 putative sugar tran...    25  8.4
TC81156 similar to PIR|T45754|T45754 hypothetical protein F24M12...    25  8.4

>TC88323 similar to PIR|T08917|T08917 auxin response factor 9 - Arabidopsis
           thaliana, partial (21%)
          Length = 1232

 Score = 28.5 bits (62), Expect = 0.99
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
 Frame = +3

Query: 9   HSWEIILHDEDRDRAWVNDE------HQVRRIYVGSA 39
           ++WEI+  D++RD   V D+      + VRRI++ S+
Sbjct: 912 NTWEIVFTDDERDMMLVGDDPWPEFCNMVRRIFICSS 1022


>TC86941 similar to GP|15294290|gb|AAK95322.1 AT5g02240/T7H20_290
           {Arabidopsis thaliana}, partial (98%)
          Length = 1121

 Score = 26.6 bits (57), Expect = 3.8
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -3

Query: 2   TILRRTGHSWEIILHDEDRDRAWVNDEHQVRRIYVGSAAVRSFDQR 47
           +I+R+  H+   I+H E+  +  V+ E++  + +VGS A   FD R
Sbjct: 915 SIVRQ*SHT---IIHHENPQKREVSWENKALKSFVGSPAPSGFDAR 787


>TC78007 PIR|T09261|T09261 JUN kinase-activation-domain-binding protein
           homolog - alfalfa, partial (97%)
          Length = 1628

 Score = 26.2 bits (56), Expect = 4.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 20  RDRAWVNDEHQVRRIYVGSAAV 41
           RD+ W ND H  +R+ + + A+
Sbjct: 404 RDKPWANDPHYFKRVKISALAL 469


>TC90810 similar to GP|7339693|dbj|BAA92898.1 ESTs C72979(E2587)
           AU082675(E2587) correspond to a region of the predicted
           gene.~hypothetical, partial (37%)
          Length = 737

 Score = 26.2 bits (56), Expect = 4.9
 Identities = 10/23 (43%), Positives = 15/23 (64%), Gaps = 3/23 (13%)
 Frame = +3

Query: 5   RRTGHS---WEIILHDEDRDRAW 24
           R TGH    W +++  +DRD+AW
Sbjct: 267 RHTGHVLNLWLLVVSTDDRDKAW 335


>BI263347 
          Length = 582

 Score = 25.4 bits (54), Expect = 8.4
 Identities = 12/22 (54%), Positives = 15/22 (67%)
 Frame = +3

Query: 71  LPIVVGSHQLLNMKSEPEKDPL 92
           LP+ V S +LL M SE  K+PL
Sbjct: 303 LPVQVASRKLLQMISERVKEPL 368


>TC84406 similar to GP|12039327|gb|AAG46115.1 putative sugar transporter
           {Oryza sativa}, partial (13%)
          Length = 753

 Score = 25.4 bits (54), Expect = 8.4
 Identities = 13/40 (32%), Positives = 22/40 (54%)
 Frame = -1

Query: 79  QLLNMKSEPEKDPLELVPDDENEHYVDSKLMSKPMEEEEL 118
           Q+LN      ++PL L   +  EH ++  L  +P+EE E+
Sbjct: 600 QILN*CLNLIEEPLLLPAQESEEHSIEIHLCQQPVEEFEV 481


>TC81156 similar to PIR|T45754|T45754 hypothetical protein F24M12.270 -
           Arabidopsis thaliana, partial (30%)
          Length = 1204

 Score = 25.4 bits (54), Expect = 8.4
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
 Frame = +1

Query: 62  LPYAPRSFELPIVVGSH---QLLNMKS-EPEKD---PLELVPDDENEHYVDSKLMSKPME 114
           LP    SF    VV      Q+LN +S E EK+   PL L   D++E   DSK+ S   +
Sbjct: 475 LPLVSLSFSPSSVVQEQLIPQVLNQESVESEKNVLSPLLLDFSDKSEVTEDSKMGSTEDD 654

Query: 115 EEELPPLEGELWNWEDPPDDE 135
            + +  ++      +D  DDE
Sbjct: 655 GDSIWSIQVNASTHDDEDDDE 717


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.317    0.137    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,094,006
Number of Sequences: 36976
Number of extensions: 69620
Number of successful extensions: 351
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of query: 145
length of database: 9,014,727
effective HSP length: 87
effective length of query: 58
effective length of database: 5,797,815
effective search space: 336273270
effective search space used: 336273270
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)