TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0024.11
         (148 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC83125 similar to PIR|T05841|T05841 spliceosome-associated prot...    28  1.0
AW776234 similar to GP|21555241|gb| putative SET protein  phospa...    27  3.0
TC80078 similar to PIR|T02105|T02105 calcium-dependent protein k...    25  8.8

>TC83125 similar to PIR|T05841|T05841 spliceosome-associated protein homolog
           F17L22.120 - Arabidopsis thaliana, partial (24%)
          Length = 722

 Score = 28.5 bits (62), Expect = 1.0
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +2

Query: 67  KEISVARLPES-EYYRAYSPEFRNETLVEGKIKRIFKFSKDSKSHLKRSSKSEIAYSGHA 125
           +++ +  +PE  + Y     EFR       KI   F F++ + S  + + K ++A    A
Sbjct: 224 EQVEIEYVPEKVDLYEGMDEEFR-------KIFEKFSFTEVAAS--EETDKKDVAEETAA 376

Query: 126 RRKAANSCHAYTDSTRESE 144
            +K ANS   Y D   ++E
Sbjct: 377 TKKKANSDSDYEDEENDNE 433


>AW776234 similar to GP|21555241|gb| putative SET protein  phospatase 2A
           inhibitor {Arabidopsis thaliana}, partial (32%)
          Length = 378

 Score = 26.9 bits (58), Expect = 3.0
 Identities = 22/86 (25%), Positives = 44/86 (50%), Gaps = 7/86 (8%)
 Frame = +2

Query: 42  FQNSKQISKIWEKRYLKSQKRWFRSKEIS--VARLPESEYYRAYSPEFRN-----ETLVE 94
           F +S   + I+ +R  ++++RW  ++  S    ++P+     + SP  RN      T   
Sbjct: 35  FSSSSTSAAIFTQRRSEAKRRWLETEPRSRNSPKIPKKLTLNSSSPS-RNCKRSKMTSKR 211

Query: 95  GKIKRIFKFSKDSKSHLKRSSKSEIA 120
             +KR+ +FSK S+S ++  S+  I+
Sbjct: 212 LMMKRVIRFSKLSRSIMRLGSRFTIS 289


>TC80078 similar to PIR|T02105|T02105 calcium-dependent protein kinase (EC
            2.7.1.-) T3K9.9 - Arabidopsis thaliana, partial (47%)
          Length = 1326

 Score = 25.4 bits (54), Expect = 8.8
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -3

Query: 89   NETLVEGKIKRIFKFSKDSKSHLKRSSKSEIAYS 122
            N+T VE   + +F+F K SK HL R    ++AYS
Sbjct: 1111 NKTRVE---ESVFRFVKHSKGHLTR----DVAYS 1031


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.316    0.128    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,088,861
Number of Sequences: 36976
Number of extensions: 46425
Number of successful extensions: 283
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of query: 148
length of database: 9,014,727
effective HSP length: 87
effective length of query: 61
effective length of database: 5,797,815
effective search space: 353666715
effective search space used: 353666715
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)