BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0023.9
(388 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BQ148771 66 2e-11
BG584442 57 1e-08
BG646730 40 0.002
TC91765 weakly similar to GP|19881779|gb|AAM01180.1 Putative ret... 38 0.006
BG647708 weakly similar to GP|13786450|gb| putative reverse tran... 38 0.006
AJ497561 weakly similar to GP|10140689|gb putative non-LTR retro... 38 0.008
TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imp... 38 0.008
AW980456 33 0.24
BG585866 32 0.42
TC90033 similar to GP|21553850|gb|AAM62943.1 hypersensitivity-re... 31 0.71
BQ141755 similar to GP|18481708|gb| hypothetical protein {Sorghu... 30 2.1
BF647389 30 2.1
TC77455 similar to GP|22335695|dbj|BAC10549. nine-cis-epoxycarot... 30 2.1
BE998290 weakly similar to GP|14532460|gb| AT5g13810/MAC12_24 {A... 29 2.7
TC81772 29 2.7
TC80355 weakly similar to GP|5031283|gb|AAD38147.1| unknown {Pru... 29 2.7
BG587113 weakly similar to PIR|A84888|A8 hypothetical protein At... 29 3.5
AJ502078 similar to GP|15529165|gb AT3g04880/T9J14_17 {Arabidops... 29 3.5
TC77083 similar to PIR|H96668|H96668 protein F1N19.9 [imported] ... 28 7.9
BQ144482 similar to GP|6523547|emb| hydroxyproline-rich glycopro... 28 7.9
>BQ148771
Length = 680
Score = 66.2 bits (160), Expect = 2e-11
Identities = 65/231 (28%), Positives = 91/231 (39%), Gaps = 3/231 (1%)
Frame = -3
Query: 95 LKGWKEKSLSRAGREILIKSIAQAIPSYIMSCFILPDSICADIDRMIACFFWGGDVTRRG 154
L WK LS A R L KS+ +A+P Y M I+P + +I ++ F WG R
Sbjct: 573 LANWKANHLSLARRVTLAKSVIEAVPLYPMMTTIIPKACIEEIQKLQRKFVWGDTEVSRR 394
Query: 155 LHWTRWANLCKNKRDGGLGFRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVYSPSSSI 214
H W + K K GLG R +A + K IY SL V + Y S S+
Sbjct: 393 YHAVGWETMSKPKTIYGLGLRRLDVMNKACIMKLGWSIYSGSNSLCTEVMRGKYQRSESL 214
Query: 215 LMAKKGYITWSSILKAGGKIEGGGGGLRWRVGDGFQINLLQDKWLPDGSSLVYMHEAIAE 274
+ +K P SSL +A+ +
Sbjct: 213 ------------------------------------EEIFLEK--PTDSSL---WKALVK 157
Query: 275 LRLEKVSDLLD-NGRWNLELLEEVFSSSPMQKILAI--PLSNQGNTDALYW 322
L E +L+D NG WN E L++ +Q+I+AI P N G +D L W
Sbjct: 156 LWPEIERNLVDSNGNWNWEKLKQWLPFDVLQRIMAIATPHENLG-SDKLIW 7
>BG584442
Length = 775
Score = 57.0 bits (136), Expect = 1e-08
Identities = 32/96 (33%), Positives = 53/96 (54%), Gaps = 1/96 (1%)
Frame = +1
Query: 93 KRLKGWKEKSLSRAGREILIKSIAQAIPSYIMSCFILPDSICADIDRMIACFFW-GGDVT 151
K++ + K LS+ E++IK Q+I SY+MS F+L +S +I++++ F W
Sbjct: 379 KKINF*RNKCLSKVM*EVMIKYALQSISSYVMSIFLLLNSQVDEIEKIMNTFSWVHVGEN 558
Query: 152 RRGLHWTRWANLCKNKRDGGLGFRFFRAFKEALVAK 187
R+G+HW L +K GG+GF F F ++ K
Sbjct: 559 RKGMHWMS*EKLFVHKNYGGMGFTDFTTFNIPMLGK 666
>BG646730
Length = 799
Score = 40.0 bits (92), Expect = 0.002
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Frame = +1
Query: 240 GLRWRVGDGFQINLLQDKWLPDGSSLVYMHEAIAELRLEKVSDLLDNGRWN--LELLEEV 297
G RW + +G + + +D WLP+ + + +S+L+D + +L+ V
Sbjct: 448 GSRWSISNGQNVRIWKDDWLPNQTGFKVCSPMVDFEEATCISELIDTNTKSSKRDLVRNV 627
Query: 298 FSSSPMQKILAIPLSNQGNTD--ALYWYDTFNGVYVCKSGYKFIR 340
FS+ ++IL IPLS + D LYW N Y +S + I+
Sbjct: 628 FSAFEAKQILNIPLSWRLWPDRRILYWERDRN--YSVRSAHHLIK 756
>TC91765 weakly similar to GP|19881779|gb|AAM01180.1 Putative retroelement
{Oryza sativa (japonica cultivar-group)}, partial (1%)
Length = 625
Score = 38.1 bits (87), Expect = 0.006
Identities = 19/54 (35%), Positives = 35/54 (64%)
Frame = +3
Query: 54 LTQLLEVKEVKSFDKYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAG 107
+T +L V+ + KYLGLP++IG+ +T F+ +K +W++ K + E+ +S G
Sbjct: 447 ITYILGVQFMLGTCKYLGLPSMIGRDRTTTFSSIKGGVWQKNK-FLERHMSIQG 605
>BG647708 weakly similar to GP|13786450|gb| putative reverse transcriptase
{Oryza sativa}, partial (9%)
Length = 708
Score = 38.1 bits (87), Expect = 0.006
Identities = 21/84 (25%), Positives = 42/84 (50%)
Frame = +3
Query: 258 WLPDGSSLVYMHEAIAELRLEKVSDLLDNGRWNLELLEEVFSSSPMQKILAIPLSNQGNT 317
W+P H + L ++++ D D +WN +L+ F++ +I+ IPLS +
Sbjct: 348 WIPSKREFKLNHVS-GSLSVDELIDY-DTKQWNRDLIFHSFNNYAAHQIIKIPLSMRQPE 521
Query: 318 DALYWYDTFNGVYVCKSGYKFIRD 341
D + W+ +G+Y +S + + D
Sbjct: 522 DKIIWHWEKDGIYSVRSAHHALCD 593
>AJ497561 weakly similar to GP|10140689|gb putative non-LTR retroelement
reverse transcriptase {Oryza sativa (japonica
cultivar-group)}, partial (2%)
Length = 621
Score = 37.7 bits (86), Expect = 0.008
Identities = 22/71 (30%), Positives = 33/71 (45%), Gaps = 3/71 (4%)
Frame = +2
Query: 198 SLMGRVFKVVYSPSSSILMAKKGY---ITWSSILKAGGKIEGGGGGLRWRVGDGFQINLL 254
SL+ ++ K Y P A G+ TW S+L + G RW +GDG QIN+
Sbjct: 410 SLLSKILKFKYFPQWDFSYANLGHNPSFTWRSLLSTQSLLTLGH---RWMIGDGSQINVS 580
Query: 255 QDKWLPDGSSL 265
W+ + +L
Sbjct: 581 SMSWIRNRPTL 613
>TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imported] -
Arabidopsis thaliana, partial (6%)
Length = 951
Score = 37.7 bits (86), Expect = 0.008
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +2
Query: 69 YLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILIKSIAQAIPSYIM 124
YLG+P + + + RI RL GW + LS GR +L+KS+ ++ Y +
Sbjct: 761 YLGMPIEGNSRRLSFWEPIVNRIKARLTGWNSRFLSFGGRLVLLKSVLTSLSVYAL 928
>AW980456
Length = 779
Score = 32.7 bits (73), Expect = 0.24
Identities = 28/105 (26%), Positives = 42/105 (39%), Gaps = 14/105 (13%)
Frame = -2
Query: 260 PDGSSLVYMHEAIAELRLE--------KVSDLLDNGR----WNLELLEEVFSSSPMQKIL 307
PD LV + ++ RL K ++ D R N + + S KI+
Sbjct: 418 PDKEQLVSIPRSLTTFRLPIHLKRWS*KEIEMQDQRRPIQISNFSCVVRPLNFS*ADKIM 239
Query: 308 AIPLSNQGNTDALYWYDTFNGVYVCKSGYKFIRDMMLREE--HRP 350
+ PL + D L W D +G Y KS Y+F + + HRP
Sbjct: 238 STPLISHA*LDRLIWKDEKHGKYYVKSAYRFCVEELFDSSYLHRP 104
>BG585866
Length = 828
Score = 32.0 bits (71), Expect = 0.42
Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
Frame = +3
Query: 240 GLRWRVGDGFQINLLQDKWLPDGSSLVYMHEA-----IAELRLEKVSDLLDNGRWNLELL 294
G WR G G W + SSL + I +L L V D+ G + + L
Sbjct: 114 GYTWRAGSGNS-----SFWYTNWSSLGLLGTQAPFVDIHDLHLT-VKDVFTTGGQHTQSL 275
Query: 295 EEVFSSSPMQKILAIPLS-NQGNTDALYWYDTFNGVYVCKSGYKFI 339
+ + + I L+ N DA W NGVY KSGY +I
Sbjct: 276 YTILPTDIAEVINNTHLNFNASIGDAYIWPHNSNGVYTAKSGYSWI 413
>TC90033 similar to GP|21553850|gb|AAM62943.1 hypersensitivity-related
protein-like protein {Arabidopsis thaliana}, partial
(8%)
Length = 1184
Score = 31.2 bits (69), Expect = 0.71
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 299 SSSPMQKILAIPLSNQGNTDALYWYDTFNGVYVCK 333
SS P + +L P+ GNT L+W++ +NGV C+
Sbjct: 488 SSFPSR*VL--PIGGNGNTIYLWWHNHWNGVVTCR 586
>BQ141755 similar to GP|18481708|gb| hypothetical protein {Sorghum bicolor},
partial (12%)
Length = 702
Score = 29.6 bits (65), Expect = 2.1
Identities = 10/35 (28%), Positives = 21/35 (59%)
Frame = +1
Query: 324 DTFNGVYVCKSGYKFIRDMMLREEHRPLPCRSRML 358
++F ++C G++ D+ R+ H P+PC + +L
Sbjct: 538 ESFTTNFICHRGFEAAMDIGSRKTHGPIPCGAALL 642
>BF647389
Length = 404
Score = 29.6 bits (65), Expect = 2.1
Identities = 21/63 (33%), Positives = 31/63 (48%)
Frame = +2
Query: 68 KYLGLPTIIGKSKTQIFNFVKERIWKRLKGWKEKSLSRAGREILIKSIAQAIPSYIMSCF 127
+YLG+P + K + VK+ I R++ K LS AG LIK + + Y F
Sbjct: 41 RYLGVP--LSSKKLYVIQRVKKIIC-RIEN*SSKLLSYAGSLQLIKIVLFGVQPYWSQVF 211
Query: 128 ILP 130
+LP
Sbjct: 212 VLP 220
>TC77455 similar to GP|22335695|dbj|BAC10549. nine-cis-epoxycarotenoid
dioxygenase1 {Pisum sativum}, partial (43%)
Length = 1865
Score = 29.6 bits (65), Expect = 2.1
Identities = 23/74 (31%), Positives = 37/74 (49%), Gaps = 3/74 (4%)
Frame = -3
Query: 164 CKNKRDGGLGFRFFRAFKEALVAKN**RIYMFPESLMGRVFKVVYSP---SSSILMAKKG 220
C + GGLG R R +L+AK R+ SL V + +Y P S ++++ + G
Sbjct: 969 CLPRCKGGLGVRDIRLVNVSLLAKWWWRLLQDQSSLWKEVLEDIYGPRVSSRTMMVGRIG 790
Query: 221 YITWSSILKAGGKI 234
+ +L+ GGKI
Sbjct: 789 RL----MLQDGGKI 760
>BE998290 weakly similar to GP|14532460|gb| AT5g13810/MAC12_24 {Arabidopsis
thaliana}, partial (19%)
Length = 584
Score = 29.3 bits (64), Expect = 2.7
Identities = 11/24 (45%), Positives = 16/24 (65%)
Frame = -1
Query: 227 ILKAGGKIEGGGGGLRWRVGDGFQ 250
+ + G +GGGG LRWR+G+ Q
Sbjct: 128 VRQCNGNGDGGGGELRWRLGEANQ 57
>TC81772
Length = 982
Score = 29.3 bits (64), Expect = 2.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 240 GLRWRVGDGFQINLLQDKWL 259
G W++GDG IN+ D WL
Sbjct: 654 GHHWKIGDGSSINIWTDHWL 595
>TC80355 weakly similar to GP|5031283|gb|AAD38147.1| unknown {Prunus
armeniaca}, partial (61%)
Length = 878
Score = 29.3 bits (64), Expect = 2.7
Identities = 20/72 (27%), Positives = 34/72 (46%)
Frame = +2
Query: 290 NLELLEEVFSSSPMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGYKFIRDMMLREEHR 349
++E+ +E++S PM+ N ++ AL W DTF VC + + +
Sbjct: 374 DVEVKKELYSRDPMRPFSYNSNFNLYSSSALNWRDTF----VCS-----LAPNAPKPQDL 526
Query: 350 PLPCRSRMLIFG 361
PL CR +L +G
Sbjct: 527 PLVCRDELLEYG 562
>BG587113 weakly similar to PIR|A84888|A8 hypothetical protein At2g45230
[imported] - Arabidopsis thaliana, partial (10%)
Length = 767
Score = 28.9 bits (63), Expect = 3.5
Identities = 15/47 (31%), Positives = 22/47 (45%)
Frame = -3
Query: 290 NLELLEEVFSSSPMQKILAIPLSNQGNTDALYWYDTFNGVYVCKSGY 336
N L+ +F +KIL+I D+ W + +G Y KSGY
Sbjct: 510 NANLINSIFPEGTRRKILSIHPQGPIGEDSYSWEYSKSGHYSVKSGY 370
>AJ502078 similar to GP|15529165|gb AT3g04880/T9J14_17 {Arabidopsis
thaliana}, partial (53%)
Length = 647
Score = 28.9 bits (63), Expect = 3.5
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -1
Query: 151 TRRGLHWTRWAN--LCKNKRDGGL 172
TRRG+ W RW + C+ +RD GL
Sbjct: 278 TRRGICWRRWKHRRRCRRRRDRGL 207
>TC77083 similar to PIR|H96668|H96668 protein F1N19.9 [imported] -
Arabidopsis thaliana, complete
Length = 1227
Score = 27.7 bits (60), Expect = 7.9
Identities = 8/22 (36%), Positives = 13/22 (58%)
Frame = -3
Query: 125 SCFILPDSICADIDRMIACFFW 146
SC+++ D +C I + CF W
Sbjct: 649 SCYLISDGLCQKIHEIHICFMW 584
>BQ144482 similar to GP|6523547|emb| hydroxyproline-rich glycoprotein DZ-HRGP
{Volvox carteri f. nagariensis}, partial (16%)
Length = 993
Score = 27.7 bits (60), Expect = 7.9
Identities = 11/17 (64%), Positives = 12/17 (69%)
Frame = -2
Query: 231 GGKIEGGGGGLRWRVGD 247
G +IEG GGG RW GD
Sbjct: 221 GAEIEGEGGGKRWARGD 171
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.334 0.147 0.477
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,526,257
Number of Sequences: 36976
Number of extensions: 201520
Number of successful extensions: 1778
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1773
length of query: 388
length of database: 9,014,727
effective HSP length: 98
effective length of query: 290
effective length of database: 5,391,079
effective search space: 1563412910
effective search space used: 1563412910
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0023.9