BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0023.8
(85 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BQ147689 28 0.82
TC81181 similar to PIR|T05940|T05940 cytochrome P450 83D1p - soy... 27 1.1
TC78574 similar to GP|21593735|gb|AAM65702.1 unknown {Arabidopsi... 27 1.1
TC86191 similar to PIR|T08454|T08454 hypothetical protein F22O6.... 27 1.1
TC78808 homologue to GP|21261784|emb|CAD32500. protein kinase Ck... 27 1.4
BQ154922 similar to GP|17645715|em unnamed protein product {Lyco... 27 1.8
TC76340 homologue to SP|Q9SM09|VATA_CITUN Vacuolar ATP synthase ... 26 2.4
TC86622 weakly similar to GP|20197623|gb|AAM15156.1 putative myo... 26 2.4
AW692942 similar to GP|23615544|emb hypothetical protein {Plasmo... 26 2.4
TC91642 similar to PIR|E96613|E96613 hypothetical protein T15M6.... 26 3.1
AW191224 similar to GP|14190379|gb| AT5g60590/muf9_240 {Arabidop... 26 3.1
TC89306 similar to SP|P56820|IF37_ARATH Eukaryotic translation i... 25 4.0
TC78221 similar to PIR|T05188|T05188 protein kinase F4I10.10 (EC... 25 4.0
TC91645 homologue to GP|6041804|gb|AAF02124.1| putative protein ... 25 4.0
TC83029 similar to GP|20330757|gb|AAM19120.1 Putative glucan syn... 25 4.0
AL367596 25 4.0
TC81112 weakly similar to PIR|T08454|T08454 hypothetical protein... 25 5.3
BG455290 similar to GP|9049427|dbj| hypothetical protein {Oryza ... 25 5.3
TC90070 similar to PIR|A90125|A90125 60S ribosomal protein L18A ... 25 5.3
TC89423 similar to GP|20330757|gb|AAM19120.1 Putative glucan syn... 25 5.3
>BQ147689
Length = 564
Score = 27.7 bits (60), Expect = 0.82
Identities = 10/43 (23%), Positives = 25/43 (57%)
Frame = +3
Query: 2 ILIGVMFFYFFFCNFIGLITMGLLLRIGIGDVAWLSFVLQLKT 44
+ + + F+F F F+G++ G+ L + ++ +SF++ L +
Sbjct: 3 LFLSIFGFFFLFDQFLGVLAKGITLTVHHFNLLEISFIVLLSS 131
>TC81181 similar to PIR|T05940|T05940 cytochrome P450 83D1p - soybean
(fragment), partial (37%)
Length = 905
Score = 27.3 bits (59), Expect = 1.1
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -2
Query: 48 IRGRRGMNLHLLTLLLDLMFSMLQFGYTLF 77
++G+ G+N L ++LDL+ M+ F Y+LF
Sbjct: 121 MKGQAGVNFQLEEVVLDLVELMMLF*YSLF 32
>TC78574 similar to GP|21593735|gb|AAM65702.1 unknown {Arabidopsis thaliana},
partial (60%)
Length = 1285
Score = 27.3 bits (59), Expect = 1.1
Identities = 11/27 (40%), Positives = 18/27 (65%)
Frame = +1
Query: 2 ILIGVMFFYFFFCNFIGLITMGLLLRI 28
++ ++FF FFC+F GLI +G L +
Sbjct: 1027 VISAMLFFSLFFCHFFGLI-LGCLCHV 1104
>TC86191 similar to PIR|T08454|T08454 hypothetical protein F22O6.170 -
Arabidopsis thaliana, partial (19%)
Length = 547
Score = 27.3 bits (59), Expect = 1.1
Identities = 17/51 (33%), Positives = 25/51 (48%)
Frame = +1
Query: 12 FFCNFIGLITMGLLLRIGIGDVAWLSFVLQLKTKEEIRGRRGMNLHLLTLL 62
F C F + + +L + + V WLSFV K E+R RR +L +L
Sbjct: 52 FCCLFQDSLQLLMLFKKCLNLVLWLSFVWFFKLIVEVRLRRKQGRYLRCML 204
>TC78808 homologue to GP|21261784|emb|CAD32500. protein kinase Ck2
regulatory subunit 2 {Nicotiana tabacum}, partial (82%)
Length = 1468
Score = 26.9 bits (58), Expect = 1.4
Identities = 15/38 (39%), Positives = 24/38 (62%)
Frame = -2
Query: 3 LIGVMFFYFFFCNFIGLITMGLLLRIGIGDVAWLSFVL 40
LI +FF+FFF + +ITM ++L + +V LSF +
Sbjct: 156 LILFLFFFFFFDSSYSIITMMMIL---VEEVRVLSFFI 52
>BQ154922 similar to GP|17645715|em unnamed protein product {Lycopersicon
esculentum}, partial (45%)
Length = 599
Score = 26.6 bits (57), Expect = 1.8
Identities = 11/23 (47%), Positives = 16/23 (68%)
Frame = +2
Query: 4 IGVMFFYFFFCNFIGLITMGLLL 26
+ + F FF+ N IGL+T G+LL
Sbjct: 395 LSLSHFQFFYPNIIGLLTGGVLL 463
>TC76340 homologue to SP|Q9SM09|VATA_CITUN Vacuolar ATP synthase catalytic
subunit A (EC 3.6.3.14) (V-ATPase A subunit), complete
Length = 2417
Score = 26.2 bits (56), Expect = 2.4
Identities = 10/15 (66%), Positives = 12/15 (79%)
Frame = +3
Query: 3 LIGVMFFYFFFCNFI 17
LI + FF+FFF NFI
Sbjct: 21 LIQIFFFFFFFFNFI 65
>TC86622 weakly similar to GP|20197623|gb|AAM15156.1 putative myosin heavy
chain {Arabidopsis thaliana}, partial (17%)
Length = 2546
Score = 26.2 bits (56), Expect = 2.4
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -2
Query: 58 LLTLLLDLMFSMLQFGYTLFLLVFTDF 84
L+ LLL+ F ML F TLF L FT F
Sbjct: 1126 LVLLLLNCCFKML*FYETLFQLSFTIF 1046
>AW692942 similar to GP|23615544|emb hypothetical protein {Plasmodium
falciparum 3D7}, partial (1%)
Length = 437
Score = 26.2 bits (56), Expect = 2.4
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -1
Query: 6 VMFFYFFFCNFIGLITMGLLLRIGIGDVAWLSFVLQLKTKEEIRGRRGMN 55
++FF FFFC + +I + ++ G G KEE++G+ +N
Sbjct: 257 ILFFLFFFCFLLFIINIEWKVKFG*G-------------KEEMKGKIKLN 147
>TC91642 similar to PIR|E96613|E96613 hypothetical protein T15M6.22
[imported] - Arabidopsis thaliana, partial (11%)
Length = 949
Score = 25.8 bits (55), Expect = 3.1
Identities = 14/36 (38%), Positives = 19/36 (51%)
Frame = -1
Query: 5 GVMFFYFFFCNFIGLITMGLLLRIGIGDVAWLSFVL 40
G FF+FFF F I G R+G+ W SF++
Sbjct: 346 GFFFFFFFFFLF---ICKGYTYRVGV--TLWSSFLM 254
>AW191224 similar to GP|14190379|gb| AT5g60590/muf9_240 {Arabidopsis
thaliana}, partial (28%)
Length = 444
Score = 25.8 bits (55), Expect = 3.1
Identities = 9/21 (42%), Positives = 16/21 (75%)
Frame = -1
Query: 6 VMFFYFFFCNFIGLITMGLLL 26
+ F+FFFC+F+ L+++ LL
Sbjct: 84 INLFFFFFCSFLHLLSIIALL 22
>TC89306 similar to SP|P56820|IF37_ARATH Eukaryotic translation initiation
factor 3 subunit 7 (eIF-3 zeta) (eIF3d) (p66).
[Mouse-ear cress], partial (45%)
Length = 1037
Score = 25.4 bits (54), Expect = 4.0
Identities = 13/42 (30%), Positives = 21/42 (49%), Gaps = 9/42 (21%)
Frame = +1
Query: 7 MFFYFFFCNFIGLITMGLLL---------RIGIGDVAWLSFV 39
M FY C +GL T+G+LL I + ++W+ F+
Sbjct: 727 MLFYLR*CVLLGLFTLGILLFSVLGTSFSLISVMGLSWICFL 852
>TC78221 similar to PIR|T05188|T05188 protein kinase F4I10.10 (EC 2.7.1.-) -
Arabidopsis thaliana, partial (68%)
Length = 1067
Score = 25.4 bits (54), Expect = 4.0
Identities = 13/29 (44%), Positives = 17/29 (57%)
Frame = +2
Query: 46 EEIRGRRGMNLHLLTLLLDLMFSMLQFGY 74
EE+ GR +LH TLLL + +L F Y
Sbjct: 497 EELTGRSRQSLHCETLLLISRY*ILVFNY 583
>TC91645 homologue to GP|6041804|gb|AAF02124.1| putative protein kinase
{Arabidopsis thaliana}, partial (9%)
Length = 595
Score = 25.4 bits (54), Expect = 4.0
Identities = 7/15 (46%), Positives = 11/15 (72%)
Frame = +3
Query: 3 LIGVMFFYFFFCNFI 17
L+ + FF+F CNF+
Sbjct: 360 LVAIFFFHFLICNFV 404
>TC83029 similar to GP|20330757|gb|AAM19120.1 Putative glucan synthase
{Oryza sativa (japonica cultivar-group)}, partial (11%)
Length = 692
Score = 25.4 bits (54), Expect = 4.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 20 ITMGLLLRIGIGDVAWLSFVLQLKTK 45
I MGLLL + +AW FV + +T+
Sbjct: 425 IVMGLLLFTPVAFLAWFPFVSEFQTR 502
>AL367596
Length = 509
Score = 25.4 bits (54), Expect = 4.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 6 VMFFYFFFCNFIGLITMGLLL 26
V FFYFFF N+ +T L L
Sbjct: 138 VFFFYFFFYNYEATLTT*LFL 76
>TC81112 weakly similar to PIR|T08454|T08454 hypothetical protein F22O6.170
- Arabidopsis thaliana, partial (27%)
Length = 840
Score = 25.0 bits (53), Expect = 5.3
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2
Query: 9 FYFFFCNFIG 18
F+FFFCNF G
Sbjct: 569 FHFFFCNFFG 598
>BG455290 similar to GP|9049427|dbj| hypothetical protein {Oryza sativa
(japonica cultivar-group)}, partial (8%)
Length = 357
Score = 25.0 bits (53), Expect = 5.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 10 YFFFCNFIGLITMGLLLRIGIGDVAWL 36
Y F C FIG + +G+L + V W+
Sbjct: 230 YLFLCFFIGSVCLGMLKKRFDSVVIWI 310
>TC90070 similar to PIR|A90125|A90125 60S ribosomal protein L18A
[imported] - Guillardia theta nucleomorph, partial (9%)
Length = 318
Score = 25.0 bits (53), Expect = 5.3
Identities = 10/23 (43%), Positives = 15/23 (64%)
Frame = -2
Query: 6 VMFFYFFFCNFIGLITMGLLLRI 28
++FF+F FCN I + + L L I
Sbjct: 83 LLFFFFSFCNLINTVQLLLSLVI 15
>TC89423 similar to GP|20330757|gb|AAM19120.1 Putative glucan synthase
{Oryza sativa (japonica cultivar-group)}, partial (17%)
Length = 1020
Score = 25.0 bits (53), Expect = 5.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 20 ITMGLLLRIGIGDVAWLSFVLQLKTK 45
+ MGLLL I +AW FV + +T+
Sbjct: 724 VIMGLLLFTPIAFLAWFPFVSEFQTR 801
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.343 0.159 0.492
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,219,833
Number of Sequences: 36976
Number of extensions: 47431
Number of successful extensions: 1054
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of query: 85
length of database: 9,014,727
effective HSP length: 61
effective length of query: 24
effective length of database: 6,759,191
effective search space: 162220584
effective search space used: 162220584
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0023.8