BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0023.7
(362 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BQ144303 weakly similar to GP|6523547|emb| hydroxyproline-rich g... 31 0.65
BG451937 similar to GP|9758872|dbj| contains similarity to salt-... 31 0.65
TC86970 similar to GP|9759020|dbj|BAB09389.1 protein kinase ATN1... 29 2.5
BQ751645 similar to PIR|A31928|A319 glucose transport protein h... 29 3.2
TC81124 homologue to GP|14597044|emb|CAC43563. unnamed protein p... 28 5.5
TC92622 similar to GP|3170523|gb|AAC18088.1| coatomer alpha subu... 28 5.5
TC90737 28 5.5
TC78613 similar to PIR|A84619|A84619 probable serine carboxypept... 28 5.5
TC77791 similar to GP|10176862|dbj|BAB10068. emb|CAB80929.1~gene... 28 7.2
TC78003 similar to GP|20146093|dbj|BAB88935. glucosyltransferase... 28 7.2
BQ157993 similar to GP|13122418|dbj putative glycin-rich protein... 28 7.2
TC89946 similar to GP|17979159|gb|AAL49775.1 unknown protein {Ar... 28 7.2
TC88698 similar to GP|16226853|gb|AAL16281.1 At1g11870/F12F1_29 ... 28 7.2
BG648325 similar to GP|10176862|dbj emb|CAB80929.1~gene_id:MRO11... 28 7.2
TC88697 similar to GP|16226853|gb|AAL16281.1 At1g11870/F12F1_29 ... 28 7.2
BG647766 similar to GP|6630554|gb|A unknown protein {Arabidopsis... 27 9.4
TC88586 similar to GP|21617884|gb|AAM66934.1 putative HAM1 prote... 27 9.4
BQ141932 weakly similar to GP|6523547|emb hydroxyproline-rich gl... 27 9.4
TC80947 weakly similar to GP|9759560|dbj|BAB11162.1 C3HC4-type R... 27 9.4
AW776630 weakly similar to PIR|S18883|S188 ribonucleoprotein pre... 27 9.4
>BQ144303 weakly similar to GP|6523547|emb| hydroxyproline-rich glycoprotein
DZ-HRGP {Volvox carteri f. nagariensis}, partial (11%)
Length = 1158
Score = 31.2 bits (69), Expect = 0.65
Identities = 14/26 (53%), Positives = 17/26 (64%)
Frame = -3
Query: 207 LTVTFYYVRVSQKTIHSHKDSCLDKD 232
+T + YYV S TIHSH CLD+D
Sbjct: 1111 ITFSIYYVS-SHDTIHSHSTPCLDRD 1037
>BG451937 similar to GP|9758872|dbj| contains similarity to salt-inducible
protein~gene_id:K24G6.6 {Arabidopsis thaliana}, partial
(18%)
Length = 670
Score = 31.2 bits (69), Expect = 0.65
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 314 HLQNRSLICSFVPKTTTSRDPHLPPSNPSR 343
H ++L+ + + TTT+R P LPP NP+R
Sbjct: 71 HRTQQNLLMASLSTTTTARFPPLPPPNPTR 160
>TC86970 similar to GP|9759020|dbj|BAB09389.1 protein kinase ATN1-like
protein {Arabidopsis thaliana}, partial (97%)
Length = 1453
Score = 29.3 bits (64), Expect = 2.5
Identities = 31/105 (29%), Positives = 44/105 (41%)
Frame = -2
Query: 186 PCLTISTCYAGHEQEQYNSTWLTVTFYYVRVSQKTIHSHKDSCLDKDYYLYNTLRYSQEQ 245
PCL+++ Y ++Y V VS I S KDS L K
Sbjct: 876 PCLSVTVLYNSGAIQRY-----------VPVSAVII-SVKDSSLAKP------------- 772
Query: 246 YNSALLTVTSYYTRSILPGTSSQCLTSKECHPHSVSPVVAAAHPL 290
SA LTV S L G S+C+ EC HS++ +++A P+
Sbjct: 771 -KSANLTVPWSSVNSKLSGLRSRCMIP*ECR-HSIAREISSAKPM 643
>BQ751645 similar to PIR|A31928|A319 glucose transport protein high affinity
- yeast (Saccharomyces cerevisiae), partial (2%)
Length = 804
Score = 28.9 bits (63), Expect = 3.2
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Frame = +3
Query: 9 NSAPTLQTGER--PST-TRTRHGGSDLSKSWSM------TAVLFQIWTSVGSGGGGRRLA 59
+S+PTL G + P T T +RHG S+SWS ++ L T GG GR A
Sbjct: 330 SSSPTLDRGSQRVPRTQTESRHGFPSSSRSWSRS*ASAPSSALSPAPTRPTGGGEGRV*A 509
Query: 60 AMAEAAGERCFGGGGWEKTNQMSP---ISATLILLT 92
+ + ++ K+ +P SATL+LLT
Sbjct: 510 SASSSSSLATL-----SKSPPWTPGCTWSATLLLLT 602
>TC81124 homologue to GP|14597044|emb|CAC43563. unnamed protein product
{Arabidopsis thaliana}, partial (21%)
Length = 1609
Score = 28.1 bits (61), Expect = 5.5
Identities = 13/32 (40%), Positives = 16/32 (49%)
Frame = +1
Query: 48 SVGSGGGGRRLAAMAEAAGERCFGGGGWEKTN 79
S SGGG M +G FGGG E++N
Sbjct: 904 STSSGGGDHSRVQMGGGSGNYGFGGGNHEQSN 999
>TC92622 similar to GP|3170523|gb|AAC18088.1| coatomer alpha subunit
{Aspergillus nidulans}, partial (16%)
Length = 801
Score = 28.1 bits (61), Expect = 5.5
Identities = 25/82 (30%), Positives = 35/82 (42%)
Frame = -2
Query: 263 PGTSSQCLTSKECHPHSVSPVVAAAHPLDVRNLGSHYHLKVFYIRLIHYEVHLQNRSLIC 322
P + ++C +E HPH P HP R G H L R H + Q+R +
Sbjct: 461 PRSRNRC-QPRERHPH---PGPNQRHPHHQRQSGCHSSL-----RRRHQQQRHQSRWQLR 309
Query: 323 SFVPKTTTSRDPHLPPSNPSRK 344
+ P+ RDP P PSR+
Sbjct: 308 APPPE----RDPQTDPEGPSRR 255
>TC90737
Length = 760
Score = 28.1 bits (61), Expect = 5.5
Identities = 22/69 (31%), Positives = 32/69 (45%), Gaps = 9/69 (13%)
Frame = -2
Query: 289 PLDVRNLGSHYHLKVFYIRLIHYEVHLQNRSLICSFVPKTTTSRD---------PHLPPS 339
P D +L H H VF+ R++ + HL N S+I + V +T R P L
Sbjct: 642 PCDQSSLKVHKHSCVFFARMLAF-FHLNNMSIIEAKVIRTELMRSTNPNTWNQLPTLVIL 466
Query: 340 NPSRKSFDP 348
N +RK +P
Sbjct: 465 NLNRKRSEP 439
>TC78613 similar to PIR|A84619|A84619 probable serine carboxypeptidase II
[imported] - Arabidopsis thaliana, partial (26%)
Length = 780
Score = 28.1 bits (61), Expect = 5.5
Identities = 18/55 (32%), Positives = 26/55 (46%)
Frame = -1
Query: 232 DYYLYNTLRYSQEQYNSALLTVTSYYTRSILPGTSSQCLTSKECHPHSVSPVVAA 286
D L +RY ++ LL RS+L S+ L S +CH VSP V++
Sbjct: 585 DSDLQRQIRYPPSEHGKTLL-------RSVLRSCMSRTLHSCKCHAICVSPCVSS 442
>TC77791 similar to GP|10176862|dbj|BAB10068.
emb|CAB80929.1~gene_id:MRO11.1~similar to unknown
protein {Arabidopsis thaliana}, partial (31%)
Length = 1053
Score = 27.7 bits (60), Expect = 7.2
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Frame = -2
Query: 119 EPVVDHLAV---WRPSNHKQIDKQTSKQDSARVNSRNKAGHLGPNTGLVFNHFCSG 171
EP+ L+ WR S + + NS ++ G + PN+ + HFC G
Sbjct: 317 EPITRGLSFGSEWRTSTKRM*SLMFADGGKGMRNSSSQFG*VSPNSATLVEHFCDG 150
>TC78003 similar to GP|20146093|dbj|BAB88935. glucosyltransferase NTGT2
{Nicotiana tabacum}, partial (50%)
Length = 1740
Score = 27.7 bits (60), Expect = 7.2
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1
Query: 183 HNPPCLTISTCY 194
HNPPCLT+S+ Y
Sbjct: 130 HNPPCLTVSSLY 165
>BQ157993 similar to GP|13122418|dbj putative glycin-rich protein {Oryza
sativa (japonica cultivar-group)}, partial (5%)
Length = 1045
Score = 27.7 bits (60), Expect = 7.2
Identities = 18/53 (33%), Positives = 25/53 (46%), Gaps = 2/53 (3%)
Frame = -3
Query: 36 WSMTAVLF--QIWTSVGSGGGGRRLAAMAEAAGERCFGGGGWEKTNQMSPISA 86
W + LF + +G GGGG +A A A G GGGG ++ + I A
Sbjct: 314 WRLLTYLFPGRGGPGIGLGGGGVWGSAFAWAIGNTIKGGGGRDRFDLKKEIKA 156
>TC89946 similar to GP|17979159|gb|AAL49775.1 unknown protein {Arabidopsis
thaliana}, partial (80%)
Length = 1114
Score = 27.7 bits (60), Expect = 7.2
Identities = 20/84 (23%), Positives = 32/84 (37%), Gaps = 5/84 (5%)
Frame = +1
Query: 179 SQDGHNPPCLTISTCYAGHEQEQYNSTWLT---VTFY--YVRVSQKTIHSHKDSCLDKDY 233
S D + P + CY GH + ++ +W +FY Y V K K L Y
Sbjct: 730 SSDKNGEPVILDPACYYGHNEAEFGMSWCAGFGGSFYNSYFEVIPKQPGFEKRRDLYLLY 909
Query: 234 YLYNTLRYSQEQYNSALLTVTSYY 257
+ N Y S+ +++ Y
Sbjct: 910 HYLNHYNLFGSGYRSSAMSIIDDY 981
>TC88698 similar to GP|16226853|gb|AAL16281.1 At1g11870/F12F1_29
{Arabidopsis thaliana}, partial (22%)
Length = 611
Score = 27.7 bits (60), Expect = 7.2
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -2
Query: 49 VGSGGGGRRLAAMAEAAGERCFGGGGWE 76
VG GGGGRR GE FGG W+
Sbjct: 205 VGDGGGGRRCLDGGGRGGES-FGGESWK 125
>BG648325 similar to GP|10176862|dbj emb|CAB80929.1~gene_id:MRO11.1~similar
to unknown protein {Arabidopsis thaliana}, partial (30%)
Length = 765
Score = 27.7 bits (60), Expect = 7.2
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Frame = -3
Query: 119 EPVVDHLAV---WRPSNHKQIDKQTSKQDSARVNSRNKAGHLGPNTGLVFNHFCSG 171
EP+ L+ WR S + + NS ++ G + PN+ + HFC G
Sbjct: 307 EPITRGLSFGSEWRTSTKRM*SLMFADGGKGMRNSSSQFG*VSPNSATLVEHFCDG 140
>TC88697 similar to GP|16226853|gb|AAL16281.1 At1g11870/F12F1_29
{Arabidopsis thaliana}, partial (27%)
Length = 658
Score = 27.7 bits (60), Expect = 7.2
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -3
Query: 49 VGSGGGGRRLAAMAEAAGERCFGGGGWE 76
VG GGGGRR GE FGG W+
Sbjct: 206 VGDGGGGRRCLDGGGRGGES-FGGESWK 126
>BG647766 similar to GP|6630554|gb|A unknown protein {Arabidopsis thaliana},
partial (19%)
Length = 750
Score = 27.3 bits (59), Expect = 9.4
Identities = 20/79 (25%), Positives = 34/79 (42%), Gaps = 1/79 (1%)
Frame = +1
Query: 56 RRLAAMAEAAGERCFGGGGWEKTNQMSP-ISATLILLTHGVQVLVRVLNSNHFAPVPPRM 114
+R+ ++ G GGG + + + A+ + H + + R NS+HF P P
Sbjct: 40 KRMQGISSGGGGGASGGGSASVNDAATDHLFASSPVPPHFLHPVARP-NSDHFMPFVPVP 216
Query: 115 ANHHEPVVDHLAVWRPSNH 133
A HH+ + RP H
Sbjct: 217 AIHHQQQMAAAQYHRPVGH 273
>TC88586 similar to GP|21617884|gb|AAM66934.1 putative HAM1 protein
{Arabidopsis thaliana}, partial (88%)
Length = 857
Score = 27.3 bits (59), Expect = 9.4
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +3
Query: 110 VPPRMANHH--EPVVDHLAVWRPSNHKQIDKQTSKQDSARVNSRNKAGHLGPNTGLVFNH 167
VPPR N +PV ++P + Q + SK++ +NK H + LV +H
Sbjct: 555 VPPRGPNDFGWDPV------FQPDGYDQTYAEMSKEE------KNKISHRSKSLALVKSH 698
Query: 168 FC 169
FC
Sbjct: 699 FC 704
>BQ141932 weakly similar to GP|6523547|emb hydroxyproline-rich glycoprotein
DZ-HRGP {Volvox carteri f. nagariensis}, partial (30%)
Length = 1338
Score = 27.3 bits (59), Expect = 9.4
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = +2
Query: 46 WTSVGSGGGGRRLAAMAEAAGERCFGGGGWEK 77
W G GGGGR E GE GGGG K
Sbjct: 146 WGGCG-GGGGRGGGGGGEGEGEGWLGGGGKRK 238
>TC80947 weakly similar to GP|9759560|dbj|BAB11162.1 C3HC4-type RING zinc
finger protein-like {Arabidopsis thaliana}, partial
(46%)
Length = 1445
Score = 27.3 bits (59), Expect = 9.4
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Frame = +1
Query: 250 LLTVTSYYTRSILPGTSSQ---------CLTSKECHPHSVSPVVAAAHPLDVRNLGSHYH 300
L++ TSYY+ S+ + S+ C +S C+P V +++H + +H
Sbjct: 64 LISRTSYYSLSL*TSSKSKCQLCHI*FPCSSSYHCYPTEQQKVKSSSH------VKGQHH 225
Query: 301 LKVFYIRLIHYEVHLQNRSLICSFVPKTTTSRDPHLPP 338
K + + H N+ V + +TSR P PP
Sbjct: 226 AKPTDFQ-FGFRFH*TNQIKPIFVVTQVSTSRAPTPPP 336
>AW776630 weakly similar to PIR|S18883|S188 ribonucleoprotein precursor -
common tobacco (fragment), partial (31%)
Length = 719
Score = 27.3 bits (59), Expect = 9.4
Identities = 17/57 (29%), Positives = 28/57 (48%)
Frame = -3
Query: 82 SPISATLILLTHGVQVLVRVLNSNHFAPVPPRMANHHEPVVDHLAVWRPSNHKQIDK 138
S S+T ++T +L+ V++S +P NHH P H+A P K +D+
Sbjct: 594 SSASSTFPIVTKANPLLLFVMSSYKISP------NHHLPHGHHVANDSPPQQKNLDR 442
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.132 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,063,333
Number of Sequences: 36976
Number of extensions: 262458
Number of successful extensions: 1708
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 1660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1706
length of query: 362
length of database: 9,014,727
effective HSP length: 97
effective length of query: 265
effective length of database: 5,428,055
effective search space: 1438434575
effective search space used: 1438434575
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0023.7