TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0023.3
         (106 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC77455 similar to GP|22335695|dbj|BAC10549. nine-cis-epoxycarot...    31  0.065
TC93063 similar to PIR|T08852|T08852 lustrin A - California red ...    26  2.7
TC79948 similar to PIR|A84830|A84830 hypothetical protein At2g40...    25  4.7
BE248449 similar to GP|12330687|gb 2-isopropylmalate synthase {A...    25  6.1
TC82948                                                                25  6.1

>TC77455 similar to GP|22335695|dbj|BAC10549. nine-cis-epoxycarotenoid
           dioxygenase1 {Pisum sativum}, partial (43%)
          Length = 1865

 Score = 31.2 bits (69), Expect = 0.065
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 18  GGLRVRETRKGNIALLGKPVWRMSQDRKCI 47
           GGL VR+ R  N++LL K  WR+ QD+  +
Sbjct: 951 GGLGVRDIRLVNVSLLAKWWWRLLQDQSSL 862


>TC93063 similar to PIR|T08852|T08852 lustrin A - California red abalone,
           partial (4%)
          Length = 1058

 Score = 25.8 bits (55), Expect = 2.7
 Identities = 9/17 (52%), Positives = 13/17 (75%)
 Frame = +3

Query: 17  CGGLRVRETRKGNIALL 33
           CGGLRVRE  +G + ++
Sbjct: 351 CGGLRVREVARGRVEVV 401


>TC79948 similar to PIR|A84830|A84830 hypothetical protein At2g40480
           [imported] - Arabidopsis thaliana, partial (28%)
          Length = 1128

 Score = 25.0 bits (53), Expect = 4.7
 Identities = 8/15 (53%), Positives = 12/15 (79%)
 Frame = +2

Query: 13  NEKDCGGLRVRETRK 27
           N+KDCGGL+   T++
Sbjct: 335 NQKDCGGLKATATKR 379


>BE248449 similar to GP|12330687|gb 2-isopropylmalate synthase {Arabidopsis
           thaliana}, partial (18%)
          Length = 344

 Score = 24.6 bits (52), Expect = 6.1
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +2

Query: 67  LKVTCRTLG--TSLIGLESD*GMVSLAC 92
           L+VTC TLG  T+ + L  D G   +AC
Sbjct: 260 LQVTCGTLGLSTATVKLVGDDGSTHIAC 343


>TC82948 
          Length = 705

 Score = 24.6 bits (52), Expect = 6.1
 Identities = 15/35 (42%), Positives = 16/35 (44%)
 Frame = +3

Query: 6   VRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRM 40
           V WEKV      G L +R   K N AL  K  W M
Sbjct: 267 VSWEKVCRPIKEGSLGIRSLSKLNEALNLKLCWDM 371


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.341    0.146    0.527 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,968,824
Number of Sequences: 36976
Number of extensions: 49590
Number of successful extensions: 290
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of query: 106
length of database: 9,014,727
effective HSP length: 82
effective length of query: 24
effective length of database: 5,982,695
effective search space: 143584680
effective search space used: 143584680
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 50 (23.9 bits)