BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0023.12
(152 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC88663 similar to GP|8778473|gb|AAF79481.1| F1L3.23 {Arabidopsi... 29 0.83
BQ141909 weakly similar to GP|14253159|emb VMP3 protein {Volvox ... 29 0.83
TC86698 similar to GP|6671932|gb|AAF23192.1| unknown protein {Ar... 28 1.1
BQ144398 similar to GP|13122418|dbj putative glycin-rich protein... 26 5.4
TC85985 similar to GP|5139695|dbj|BAA81686.1 expressed in cucumb... 26 7.0
TC87690 similar to GP|15028227|gb|AAK76610.1 putative oligopepti... 26 7.0
TC92874 PIR|T50775|T50775 probable translation initiation factor... 26 7.0
TC93166 homologue to GP|6091768|gb|AAF03478.1| hypothetical prot... 26 7.0
TC91646 weakly similar to GP|6523547|emb|CAB62280.1 hydroxyproli... 25 9.2
AW697074 weakly similar to GP|14626282|gb| putative embryonic ce... 25 9.2
BQ137252 similar to GP|6523547|emb| hydroxyproline-rich glycopro... 25 9.2
TC81122 similar to GP|20258999|gb|AAM14215.1 unknown protein {Ar... 25 9.2
>TC88663 similar to GP|8778473|gb|AAF79481.1| F1L3.23 {Arabidopsis
thaliana}, partial (34%)
Length = 946
Score = 28.9 bits (63), Expect = 0.83
Identities = 17/33 (51%), Positives = 18/33 (54%)
Frame = -3
Query: 14 GSGAAGTEAEAAAAAEGMEAATARTAEAGGGEG 46
G A T A AAAAA G+ A A AG GEG
Sbjct: 632 GVAATLTGAAAAAAAAGVPAEAAGVPGAGDGEG 534
>BQ141909 weakly similar to GP|14253159|emb VMP3 protein {Volvox carteri f.
nagariensis}, partial (13%)
Length = 1223
Score = 28.9 bits (63), Expect = 0.83
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 10 QNKRGSGAAGTEAEAAAAAEGMEAATARTAEAGGGEGFERS 50
+ KR G GTE EG R E+GGG+G E+S
Sbjct: 317 RGKRERGG-GTEGGGKGKIEGRNGTGRRRGESGGGKGREKS 436
>TC86698 similar to GP|6671932|gb|AAF23192.1| unknown protein {Arabidopsis
thaliana}, partial (52%)
Length = 1950
Score = 28.5 bits (62), Expect = 1.1
Identities = 13/38 (34%), Positives = 19/38 (49%)
Frame = +3
Query: 39 AEAGGGEGFERSSRSRLCREVAECGQYINRYKSLLPLR 76
AEAG ER LC+ C +YI + + +P+R
Sbjct: 1464 AEAGDQSKSEREEDEVLCKGKEACKEYIKSFLAAIPIR 1577
>BQ144398 similar to GP|13122418|dbj putative glycin-rich protein {Oryza
sativa (japonica cultivar-group)}, partial (10%)
Length = 1322
Score = 26.2 bits (56), Expect = 5.4
Identities = 15/43 (34%), Positives = 23/43 (52%), Gaps = 1/43 (2%)
Frame = +2
Query: 11 NKRGSGAAGTEAEA-AAAAEGMEAATARTAEAGGGEGFERSSR 52
++RG+G G + A AA G A R +GGG+G R+ +
Sbjct: 131 HRRGTGPGGGASWGNALAAAGGGAGGGRAPASGGGQGGARAGK 259
>TC85985 similar to GP|5139695|dbj|BAA81686.1 expressed in cucumber
hypocotyls {Cucumis sativus}, partial (42%)
Length = 892
Score = 25.8 bits (55), Expect = 7.0
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -1
Query: 2 ATTVQEATQN-KRGSGAAGTEAEAAAAAEGMEAATARTAEAGGGEGF 47
ATT +A + G+GAAG A AA G EA EA G F
Sbjct: 343 ATTGDDAAGDLATGTGAAGETAGVTVAAVGDEAGGDDFGEATGAGDF 203
>TC87690 similar to GP|15028227|gb|AAK76610.1 putative oligopeptidase A
{Arabidopsis thaliana}, partial (30%)
Length = 1019
Score = 25.8 bits (55), Expect = 7.0
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 83 PSKRTAVKSSCHLNRCKR 100
P+K T VK +C +N+CKR
Sbjct: 242 PNK*TKVK*TCEVNQCKR 189
>TC92874 PIR|T50775|T50775 probable translation initiation factor [imported]
- barrel medic, complete
Length = 1396
Score = 25.8 bits (55), Expect = 7.0
Identities = 13/46 (28%), Positives = 23/46 (49%)
Frame = +3
Query: 9 TQNKRGSGAAGTEAEAAAAAEGMEAATARTAEAGGGEGFERSSRSR 54
+Q ++GSG AG A + + + GG G++ SSR++
Sbjct: 945 SQTRQGSGRAGYGGRALSFNQAGGSGGYSRGRGMGGGGYQNSSRTQ 1082
>TC93166 homologue to GP|6091768|gb|AAF03478.1| hypothetical protein
{Arabidopsis thaliana}, partial (38%)
Length = 1163
Score = 25.8 bits (55), Expect = 7.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 8 ATQNKRGSGAAGTEAEAAAAAEGMEAATARTAEAGGGEGF 47
+T N SG++ + A A G+ A AGG EGF
Sbjct: 433 STYNNNFSGSSSSCAGGVGAGAGVGVGLGLGAGAGGEEGF 552
>TC91646 weakly similar to GP|6523547|emb|CAB62280.1 hydroxyproline-rich
glycoprotein DZ-HRGP {Volvox carteri f. nagariensis},
partial (15%)
Length = 984
Score = 25.4 bits (54), Expect = 9.2
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 44 GEGFERSSRSRLCREVAECGQYINRYKSLLPLRVFVFTAPSKR 86
G G RS+ +L R C Q +NR + LP + APS R
Sbjct: 139 GPGCRRSALRQLDRHFVHCDQCLNRQQP*LPSP--LMEAPSPR 261
>AW697074 weakly similar to GP|14626282|gb| putative embryonic cell protein
{Oryza sativa (japonica cultivar-group)}, partial (9%)
Length = 818
Score = 25.4 bits (54), Expect = 9.2
Identities = 15/41 (36%), Positives = 21/41 (50%), Gaps = 5/41 (12%)
Frame = -1
Query: 23 EAAAAAEGMEAATARTAEAGGGEGF-----ERSSRSRLCRE 58
E A A A+ +R + A + ERS+RSR+CRE
Sbjct: 761 ERACGARVFRASVSRESRASARQSRPARCDERSARSRVCRE 639
>BQ137252 similar to GP|6523547|emb| hydroxyproline-rich glycoprotein DZ-HRGP
{Volvox carteri f. nagariensis}, partial (10%)
Length = 1067
Score = 25.4 bits (54), Expect = 9.2
Identities = 14/37 (37%), Positives = 18/37 (47%)
Frame = -1
Query: 82 APSKRTAVKSSCHLNRCKRGAVKALFWCSVELDSLIV 118
AP +R A + SCH C+ V A W S S +V
Sbjct: 545 APVERCA-RGSCHSPLCRTPCVSAASWSSSVCSSRVV 438
>TC81122 similar to GP|20258999|gb|AAM14215.1 unknown protein {Arabidopsis
thaliana}, partial (61%)
Length = 675
Score = 25.4 bits (54), Expect = 9.2
Identities = 18/67 (26%), Positives = 30/67 (43%), Gaps = 22/67 (32%)
Frame = +2
Query: 62 CGQYINRYKSLL--PLRVFVFTAPS--------------------KRTAVKSSCHLNRCK 99
C Y +++ LL PL +F+FT PS K+ VK H ++ K
Sbjct: 20 CSFYTSKHSILLLIPLLIFLFTPPS*N*ISTLDY*SSKLWTQVKMKKIVVKLDLHDDKAK 199
Query: 100 RGAVKAL 106
+ A+K++
Sbjct: 200 QKAMKSV 220
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.316 0.129 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,289,587
Number of Sequences: 36976
Number of extensions: 55921
Number of successful extensions: 363
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of query: 152
length of database: 9,014,727
effective HSP length: 88
effective length of query: 64
effective length of database: 5,760,839
effective search space: 368693696
effective search space used: 368693696
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0023.12