BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0019b.9
(138 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC89226 weakly similar to GP|9759519|dbj|BAB10985.1 gb|AAF16763.... 30 0.31
BF635948 similar to GP|21622312|emb putative protein {Neurospora... 29 0.68
TC92553 similar to PIR|T39903|T39903 serine-rich protein - fissi... 29 0.68
TC92023 similar to GP|20198310|gb|AAM15518.1 Expressed protein {... 29 0.68
BI264996 weakly similar to GP|16417958|gb arabinosidase ARA-1 {L... 28 0.89
TC80281 similar to GP|21536792|gb|AAM61124.1 prenylated Rab rece... 28 0.89
AL370807 weakly similar to PIR|G84487|G84 probable DNA replicati... 28 1.2
BQ135691 similar to PIR|E96636|E966 hypothetical protein T7P1.21... 28 1.2
TC86658 similar to GP|3790188|emb|CAA74776.1 NAD-dependent isoci... 28 1.5
TC79800 similar to SP|O43280|TREA_HUMAN Trehalase precursor (EC ... 28 1.5
TC79172 similar to GP|9502381|gb|AAF88088.1| T12C24.29 {Arabidop... 28 1.5
TC89797 GP|13775543|gb|AAK39351.1 Hypothetical protein Y73B3A.17... 27 2.0
TC91644 similar to GP|19310467|gb|AAL84968.1 At1g01260/F6F3_25 {... 27 2.0
TC85770 similar to GP|16226301|gb|AAL16128.1 AT5g47540/MNJ7_13 {... 27 2.6
BQ141932 weakly similar to GP|6523547|emb hydroxyproline-rich gl... 27 2.6
TC82545 similar to GP|17064858|gb|AAL32583.1 putative protein {A... 27 3.4
TC90089 nodule-specific glycine-rich protein 2A [Medicago trunca... 27 3.4
AW688592 homologue to PIR|B84471|B84 cytoplasmic aconitate hydra... 26 4.4
BI267598 25 7.6
AL368376 similar to GP|15010574|gb| At2g44510/F4I1.32 {Arabidops... 25 7.6
>TC89226 weakly similar to GP|9759519|dbj|BAB10985.1
gb|AAF16763.1~gene_id:MLN1.10~strong similarity to
unknown protein {Arabidopsis thaliana}, partial (5%)
Length = 1822
Score = 30.0 bits (66), Expect = 0.31
Identities = 25/88 (28%), Positives = 36/88 (40%)
Frame = -1
Query: 25 LKTHTKPNKNQIQQEIHYAKAPQNRHTPYDLHIGEPQESNAPEPTRNLKYKFLKSLCKPK 84
L++H+ PN +Q + Y P + H P N P P +L+ L K
Sbjct: 1771 LRSHSSPNFLLLQLYLPYDPNPGS*HLP----------QNPPLPLHSLQCHCHCHLQKLP 1622
Query: 85 PITVSSLTHGSSPTPYSILRVFHNSSSP 112
+ L H P PYSI +H + SP
Sbjct: 1621 RL----LLHSFQPNPYSICLGYH*NLSP 1550
>BF635948 similar to GP|21622312|emb putative protein {Neurospora crassa},
partial (6%)
Length = 538
Score = 28.9 bits (63), Expect = 0.68
Identities = 25/109 (22%), Positives = 39/109 (34%), Gaps = 17/109 (15%)
Frame = +1
Query: 46 PQNRHTPYDLHIGEPQESNAPEPTRNLKYKFLKSLCKPKPITVSS---LTHGSSPTPY-- 100
P TP+D+H + P P N+ +F S P P + SS H ++ PY
Sbjct: 121 PPPSPTPFDMHTFFNPPNPNPNPNPNISSQFPSSAPSPPPPSSSSSYPFPHNNNNYPYDH 300
Query: 101 -------SILRVFHNSSSPHLQLAQRSIFIEDSP-----SPNSVKRPNN 137
+ H + + + RSI P P + P+N
Sbjct: 301 HHHQLQHQHQQQHHQQNQTNFPIQHRSISFPTPPLQPPQQPQPIPPPSN 447
>TC92553 similar to PIR|T39903|T39903 serine-rich protein - fission yeast
(Schizosaccharomyces pombe), partial (6%)
Length = 627
Score = 28.9 bits (63), Expect = 0.68
Identities = 15/45 (33%), Positives = 23/45 (50%)
Frame = +3
Query: 47 QNRHTPYDLHIGEPQESNAPEPTRNLKYKFLKSLCKPKPITVSSL 91
QN+ PY+L +PQ+++ P + L S+ P P SSL
Sbjct: 165 QNKSQPYNLLTSQPQKTHVHNPLTTM----LPSVIPPNPSATSSL 287
>TC92023 similar to GP|20198310|gb|AAM15518.1 Expressed protein {Arabidopsis
thaliana}, partial (66%)
Length = 580
Score = 28.9 bits (63), Expect = 0.68
Identities = 14/55 (25%), Positives = 27/55 (48%)
Frame = +3
Query: 30 KPNKNQIQQEIHYAKAPQNRHTPYDLHIGEPQESNAPEPTRNLKYKFLKSLCKPK 84
+PN+ + + + + + +H +D H + P+P L + FL +L KPK
Sbjct: 120 QPNQTMMWE---WEQEHEQQHQFHDNHNTSQKPDQIPDPNSYLNFDFLSTLSKPK 275
>BI264996 weakly similar to GP|16417958|gb arabinosidase ARA-1 {Lycopersicon
esculentum}, partial (20%)
Length = 422
Score = 28.5 bits (62), Expect = 0.89
Identities = 10/30 (33%), Positives = 18/30 (59%)
Frame = -1
Query: 55 LHIGEPQESNAPEPTRNLKYKFLKSLCKPK 84
L +G+PQ++ P+ N K++ +C PK
Sbjct: 242 LLVGDPQKNQTHHPSNNPKHRHSDQVCSPK 153
>TC80281 similar to GP|21536792|gb|AAM61124.1 prenylated Rab receptor 2
{Arabidopsis thaliana}, partial (89%)
Length = 909
Score = 28.5 bits (62), Expect = 0.89
Identities = 34/120 (28%), Positives = 44/120 (36%), Gaps = 6/120 (5%)
Frame = +1
Query: 24 KLKTHTKPNKNQIQQ------EIHYAKAPQNRHTPYDLHIGEPQESNAPEPTRNLKYKFL 77
K TH P I Q EIH P +RH+P+ L N P PT
Sbjct: 1 KYHTHQSPLPLSIIQTHAR*SEIHAPPCPPHRHSPFPL-------PNPPYPT-------- 135
Query: 78 KSLCKPKPITVSSLTHGSSPTPYSILRVFHNSSSPHLQLAQRSIFIEDSPSPNSVKRPNN 137
P P +L H S P L + +SP + PSPN+V+ PN+
Sbjct: 136 -----PAP---PNLNHRSPPP----LSAPSSPASPPPSV---------KPSPNAVRGPNS 252
>AL370807 weakly similar to PIR|G84487|G84 probable DNA replication licensing
factor mcm5 [imported] - Arabidopsis thaliana, partial
(16%)
Length = 432
Score = 28.1 bits (61), Expect = 1.2
Identities = 9/22 (40%), Positives = 15/22 (67%)
Frame = -3
Query: 47 QNRHTPYDLHIGEPQESNAPEP 68
Q +H PY ++ +P SN+P+P
Sbjct: 403 QEQHLPYHQYLQQPSSSNSPKP 338
>BQ135691 similar to PIR|E96636|E966 hypothetical protein T7P1.21 [imported]
- Arabidopsis thaliana, partial (4%)
Length = 1215
Score = 28.1 bits (61), Expect = 1.2
Identities = 22/76 (28%), Positives = 31/76 (39%), Gaps = 4/76 (5%)
Frame = -2
Query: 42 YAKAPQNRHTPYDLHIGEPQESNAPEPTRNLKYKFLKSLCKPKPITVS--SLTHGSSPTP 99
+ + P T LHI ++ P PTR+ F + P P T+S ++T PT
Sbjct: 998 HTRVPSLPPTLSPLHIILRRQPTPPHPTRSPDISFSIAPPPPPPTTISPHTITRTPPPTA 819
Query: 100 YS--ILRVFHNSSSPH 113
Y R SPH
Sbjct: 818 YDPFTARAIPALPSPH 771
>TC86658 similar to GP|3790188|emb|CAA74776.1 NAD-dependent isocitrate
dehydrogenase {Nicotiana tabacum}, partial (93%)
Length = 1606
Score = 27.7 bits (60), Expect = 1.5
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Frame = +1
Query: 20 VPEGKLKTHTKPNKNQIQ----QEIHYAKAPQNRHTP---YDLHIGEPQESNAPEPTRN 71
+ G K HT P + + IHY KA +N H P + P PTRN
Sbjct: 151 ITNGNKKIHTPPQTPPLNPIPIRTIHYLKAMRNLHAPSRRRNSPSRNPNPRRRDRPTRN 327
>TC79800 similar to SP|O43280|TREA_HUMAN Trehalase precursor (EC 3.2.1.28)
(Alpha alpha-trehalase) (Alpha alpha-trehalose
glucohydrolase)., partial (2%)
Length = 654
Score = 27.7 bits (60), Expect = 1.5
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -3
Query: 31 PNKNQIQQEIHYAKAPQNRHTPYDLH-IGEPQESNAPEPTRN 71
P KNQ+ Q+ H H P LH +P S++P+ N
Sbjct: 538 PRKNQLSQQPHPLHLSSTTHQPLHLHPHHQPLPSSSPQKHHN 413
>TC79172 similar to GP|9502381|gb|AAF88088.1| T12C24.29 {Arabidopsis
thaliana}, partial (71%)
Length = 1589
Score = 27.7 bits (60), Expect = 1.5
Identities = 16/46 (34%), Positives = 24/46 (51%)
Frame = -2
Query: 39 EIHYAKAPQNRHTPYDLHIGEPQESNAPEPTRNLKYKFLKSLCKPK 84
EI QN+H PY+ HI E++ P+ T + + L+S K K
Sbjct: 625 EIFSFSYTQNKHKPYEEHI----EAHIPQSTISTAFPALRSGSKTK 500
>TC89797 GP|13775543|gb|AAK39351.1 Hypothetical protein Y73B3A.17
{Caenorhabditis elegans}, partial (1%)
Length = 958
Score = 27.3 bits (59), Expect = 2.0
Identities = 17/72 (23%), Positives = 29/72 (39%)
Frame = +3
Query: 42 YAKAPQNRHTPYDLHIGEPQESNAPEPTRNLKYKFLKSLCKPKPITVSSLTHGSSPTPYS 101
Y PQ+ +P + P +P PT++ + +P P +P PY
Sbjct: 378 YYSHPQHHSSPSPPNQSSPSTHQSPSPTQS-------TSSQPNPYP------SQAPQPYF 518
Query: 102 ILRVFHNSSSPH 113
+ + FH + S H
Sbjct: 519 LSQPFHQTVSVH 554
>TC91644 similar to GP|19310467|gb|AAL84968.1 At1g01260/F6F3_25 {Arabidopsis
thaliana}, partial (20%)
Length = 1021
Score = 27.3 bits (59), Expect = 2.0
Identities = 18/90 (20%), Positives = 38/90 (42%)
Frame = +1
Query: 49 RHTPYDLHIGEPQESNAPEPTRNLKYKFLKSLCKPKPITVSSLTHGSSPTPYSILRVFHN 108
+H P D+ P SNA E + F+ + + + + + + S+ +
Sbjct: 763 QHAPVDVFAPRPSSSNAAELANGGRQDFVLNNYQQQRKPQMQIDFSGATSRPSVRSIVGE 942
Query: 109 SSSPHLQLAQRSIFIEDSPSPNSVKRPNNK 138
S ++ + R E++PSP+ +RP +
Sbjct: 943 SELSDVEASCR----EENPSPSDDRRPKKR 1020
>TC85770 similar to GP|16226301|gb|AAL16128.1 AT5g47540/MNJ7_13 {Arabidopsis
thaliana}, partial (86%)
Length = 1537
Score = 26.9 bits (58), Expect = 2.6
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 63 SNAPEPTRNLKYKFLKSLCKPKPITVSSLTHGSSPTPYSILRVFHNSSS 111
S P PT + KSL KPKP T S + + +LR+ NS+S
Sbjct: 205 SEPPPPTES------KSLFKPKPRTPSDIVRNTR----DLLRLLQNSNS 321
>BQ141932 weakly similar to GP|6523547|emb hydroxyproline-rich glycoprotein
DZ-HRGP {Volvox carteri f. nagariensis}, partial (30%)
Length = 1338
Score = 26.9 bits (58), Expect = 2.6
Identities = 15/51 (29%), Positives = 25/51 (48%)
Frame = -1
Query: 85 PITVSSLTHGSSPTPYSILRVFHNSSSPHLQLAQRSIFIEDSPSPNSVKRP 135
P T++ ++ S P+P R + +SPH S+ + P+P V RP
Sbjct: 1143 PHTLAPISSASPPSPRH--RPYPPLTSPHTARYSPSLSLSHYPAPRPVPRP 997
>TC82545 similar to GP|17064858|gb|AAL32583.1 putative protein {Arabidopsis
thaliana}, partial (22%)
Length = 688
Score = 26.6 bits (57), Expect = 3.4
Identities = 15/48 (31%), Positives = 24/48 (49%)
Frame = -2
Query: 75 KFLKSLCKPKPITVSSLTHGSSPTPYSILRVFHNSSSPHLQLAQRSIF 122
KF+ + C PK + + L GSS I R F +SS + ++ + F
Sbjct: 279 KFVHTYCGPKLLQLIHLRFGSSFKRVRIARSFLSSSLNRVPISNNNFF 136
>TC90089 nodule-specific glycine-rich protein 2A [Medicago truncatula]
Length = 641
Score = 26.6 bits (57), Expect = 3.4
Identities = 12/34 (35%), Positives = 15/34 (43%)
Frame = -3
Query: 66 PEPTRNLKYKFLKSLCKPKPITVSSLTHGSSPTP 99
P P+ +L F S+C P P SL P P
Sbjct: 333 PPPSSSLSLSFPPSICSPPPCAPPSLPFPPVPDP 232
>AW688592 homologue to PIR|B84471|B84 cytoplasmic aconitate hydratase
[imported] - Arabidopsis thaliana, partial (18%)
Length = 503
Score = 26.2 bits (56), Expect = 4.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 89 SSLTHGSSPTPYSILRVFHNSSSPHLQLAQRSIFIEDSPS 128
S LT + P P + N+ PHL+ A S+F+ +S S
Sbjct: 384 SRLT*CTIPEPGGTTSMLRNAVDPHLRKANLSLFLWNSSS 265
>BI267598
Length = 610
Score = 25.4 bits (54), Expect = 7.6
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +1
Query: 107 HNSSSPHLQLAQRSIFIEDSPSPNSVKRP 135
H+ S P ++ +FI +PSP P
Sbjct: 40 HHQSPPTQSISTEKVFIPSTPSPGKXSNP 126
>AL368376 similar to GP|15010574|gb| At2g44510/F4I1.32 {Arabidopsis
thaliana}, partial (10%)
Length = 471
Score = 25.4 bits (54), Expect = 7.6
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Frame = +1
Query: 6 PTVNKFTSSLETRQVPEG-------KLKTHTKPNKNQIQQEIHYAKAPQNRHTPYDLHIG 58
P+ + TSS + QVP LK+H + + QI +H PY+ H+
Sbjct: 43 PSRSLRTSSSPSTQVPSSLAVFSRMPLKSHIRRQRTQILAPLHSPXFGPRYLRPYERHVS 222
Query: 59 E 59
+
Sbjct: 223 Q 225
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.311 0.128 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,147,982
Number of Sequences: 36976
Number of extensions: 92267
Number of successful extensions: 427
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of query: 138
length of database: 9,014,727
effective HSP length: 86
effective length of query: 52
effective length of database: 5,834,791
effective search space: 303409132
effective search space used: 303409132
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0019b.9