BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0019a.6
(1380 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 145 1e-34
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 144 2e-34
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 137 4e-32
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 128 1e-29
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 121 2e-27
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 121 2e-27
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 104 3e-22
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 67 5e-19
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 93 6e-19
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 92 1e-18
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 61 1e-18
BI262917 weakly similar to GP|19920130|g Putative retroelement {... 89 2e-17
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 84 3e-16
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p... 81 3e-15
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 54 5e-13
TC92872 73 9e-13
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 70 6e-12
BE941052 weakly similar to PIR|B85188|B85 retrotransposon like p... 69 2e-11
BF519055 similar to GP|21592754|gb| unknown {Arabidopsis thalian... 63 9e-10
BG587141 similar to PIR|H86461|H86 hypothetical protein AAF32440... 60 4e-09
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 145 bits (365), Expect = 1e-34
Identities = 76/217 (35%), Positives = 120/217 (55%), Gaps = 1/217 (0%)
Frame = +1
Query: 1107 LEITYTADGLFLGHAKYAHDLLSHALMLEASHVLTPLAAGSHLVSSGEGYS-DPTHYRSL 1165
+E+ +G+++ KY DLL M +++ P+A L+ G D T Y+ +
Sbjct: 1 VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180
Query: 1166 VGALQYLTITRPDLSYAVNTVSQFLQTPTVDHFQAVKRIIRYVCAMQHFGLTFRRTSSPA 1225
VG L YL TRPDL Y ++ +S+F+ PT H AVKR++RY+ + G+ ++R S
Sbjct: 181 VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK 360
Query: 1226 VLGYSDADWARCTDHRRSTYGYAIFLGYNLLSWSAKKQPSVAHSSCESEYRAMANTASEL 1285
+ Y+D+D+A D R+ST GY L +SWS+KKQP V S+ ++E+ A A A +
Sbjct: 361 LEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQS 540
Query: 1286 VWLLNLLHELRVRLSAPPLFLSDNQSALFMAQNPVAH 1322
VW+ +L +L S DN S + +++NPV H
Sbjct: 541 VWMRRVLEKLGYTQSGSITMYCDNNSTIKLSKNPVLH 651
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 144 bits (364), Expect = 2e-34
Identities = 81/189 (42%), Positives = 109/189 (56%), Gaps = 1/189 (0%)
Frame = +2
Query: 1065 LLVYVDDIILTGSDPSLLT*FIACLNDEFAIKYLGKLGYFLGLEITYTADGLFLGHAKYA 1124
LLVYVDDI+L G+D S + L D F IK LG L YFLGLE+ + G+ L KY
Sbjct: 173 LLVYVDDIVLAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYT 352
Query: 1125 HDLLSHALMLEASHVLTPLAAGSHLVSSGEG-YSDPTHYRSLVGALQYLTITRPDLSYAV 1183
+LL + L LTP L +S Y+D T YR L+G L YLT TRPD+S+AV
Sbjct: 353 LELLEDSGNLAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAV 532
Query: 1184 NTVSQFLQTPTVDHFQAVKRIIRYVCAMQHFGLTFRRTSSPAVLGYSDADWARCTDHRRS 1243
+SQF+ P H+QA R+++Y+ GL + TS+ + ++D+DWA C R+S
Sbjct: 533 QQLSQFVSKPQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKS 712
Query: 1244 TYGYAIFLG 1252
GY +FLG
Sbjct: 713 VTGYWVFLG 739
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 137 bits (344), Expect = 4e-32
Identities = 81/264 (30%), Positives = 127/264 (47%), Gaps = 13/264 (4%)
Frame = +1
Query: 479 KRLVCYDNHKRAS---------AVLDLVHCDLWGPSPVASVDGFSYFVIFVDDFSQFTWF 529
K L+ + N K+ S +LD +H DLWGPS V S G Y + +DDF + W
Sbjct: 25 KHLLFFGNRKKVSFSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWV 204
Query: 530 YPLKRKSDFYDVLVRFKAFVENQFSRSLKVFQSDNGTEFTNNKVQALFSSSGVLHRFLCP 589
Y L+ K++ + +++ VE Q +++K +DN EF ++ ++ G+ P
Sbjct: 205 YFLRYKNETFPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIP 384
Query: 590 HTQAQNGRVERKHRHVLELGLAMLYHSHVST--SYWVHAFSTAVYIINRVPSKVLSDQIP 647
QNG ER R +LE ML ++ + WV A STA +++NR P L ++P
Sbjct: 385 RNPQQNGVAERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVP 564
Query: 648 FQLLFQVAPTYANFHPFGCRVFPCLRPYMKNKFSPRGTPCIFLGYNSHHKGFK--CFDPT 705
+ Y+N FGC + + K +PR CIFL Y S KG++ C DP
Sbjct: 565 EDIWSGNLVDYSNLRIFGCPAYALVN---DGKLAPRAGECIFLSYASESKGYRLWCSDPK 735
Query: 706 TSRTYVSRHAQFDEFCFPLTGSKS 729
+ + +SR F+E +G +S
Sbjct: 736 SQKLILSRDVTFNEDALLSSGKQS 807
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 128 bits (322), Expect = 1e-29
Identities = 76/210 (36%), Positives = 109/210 (51%), Gaps = 11/210 (5%)
Frame = +1
Query: 882 MKHPHWLPAMEDELSALHKKFTWTLVPRPYTTNVVGSK*VFRTKFHSDGTVERLKTCLVA 941
+ P WL AM+ E AL TW LVP P +G K V+R K + DG+V + K LVA
Sbjct: 82 LSDPRWLQAMKTEYKALIDNKTWDLVPLPPHKKAIGCKWVYRVKENPDGSVNKFKARLVA 261
Query: 942 QGLTQIPGFDYSLTFSPVVKATTVRLILSLVVLND*QLHQLDVKNAFLHGHLTETVYMEQ 1001
+G +Q G DY+ TFSPV+K T+RLIL++ + ++ Q+D+ NAFL+G L E VYM Q
Sbjct: 262 KGFSQTLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQIDINNAFLNGFLQEEVYMSQ 441
Query: 1002 PHGFVDLVSRLMCVG*TRL-----------STASNRRLVLGFSA*ALFSCVLVFRVVGLI 1050
P GF L+C L ++ ++ GF+ +L++ G
Sbjct: 442 PQGFEAANKSLVCKLNKSLYGLKQAPRAWYEXLTSAQIQFGFTKSRCDPSLLIYNQNG-- 615
Query: 1051 HPCSFFYKGHITLYLLVYVDDIILTGSDPS 1080
+YL +YVDDI++TGS S
Sbjct: 616 ----------ACIYLXIYVDDILITGSSAS 675
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 121 bits (304), Expect = 2e-27
Identities = 74/254 (29%), Positives = 133/254 (52%), Gaps = 9/254 (3%)
Frame = -3
Query: 398 QTGAVLGKGPCDKGFYVLDQ-----GSQALLATSSSLPRASFELWHSRLDHVNFDIIKKL 452
++ ++G+G Y+L++ + +SSSL + + LWH+RL H + + +
Sbjct: 707 ESSQLIGEGVTKGDLYMLEKLDPVSNYKCSFTSSSSLNKDA--LWHARLGHPHGRALNLM 534
Query: 453 HKLGCFNVSSILPKPICCTSCQMAKSKRLVCYDNHKRASAV----LDLVHCDLWGPSPVA 508
+ ++ + C +C + K C + R S V DL++ DLW +P
Sbjct: 533 -------LPGVVFENKNCEACILGKH----CKNVFPRTSTVYENCFDLIYTDLW-TAPSL 390
Query: 509 SVDGFSYFVIFVDDFSQFTWFYPLKRKSDFYDVLVRFKAFVENQFSRSLKVFQSDNGTEF 568
S D YFV F+D+ S++TW + K D F+A+V N + +K+ +SDNG E+
Sbjct: 389 SRDNHKYFVTFIDEKSKYTWLTLIPSKDRVIDAFKNFQAYVTNHYHAKIKILRSDNGGEY 210
Query: 569 TNNKVQALFSSSGVLHRFLCPHTQAQNGRVERKHRHVLELGLAMLYHSHVSTSYWVHAFS 628
T+ ++ G+LH+ CP+T QNG +RK++H++E+ ++++ ++V S
Sbjct: 209 TSYAFKSHLDHHGILHQTSCPYTPQQNGVAKRKNKHLMEVARSLMFQANV---------S 57
Query: 629 TAVYIINRVPSKVL 642
TA Y+IN +P+KVL
Sbjct: 56 TACYLINWIPTKVL 15
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 121 bits (303), Expect = 2e-27
Identities = 59/148 (39%), Positives = 92/148 (61%)
Frame = +2
Query: 1232 ADWARCTDHRRSTYGYAIFLGYNLLSWSAKKQPSVAHSSCESEYRAMANTASELVWLLNL 1291
+DWA T+ R+ST GYA LG +SWS+KKQP VA S+ E+EY A + A++ VWL +
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181
Query: 1292 LHELRVRLSAPPLFLSDNQSALFMAQNPVAHKHAKHIDLDCHFVRELVSSGRLAVRHVPT 1351
L + + P DN+SA+ +++NPV H +KHID+ H +REL++ + + + PT
Sbjct: 182 LEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYCPT 361
Query: 1352 SLQLADIFTKVLPRPLFDLFRSKLRVGL 1379
++ADIFTK P + ++ K +G+
Sbjct: 362 EEKIADIFTK--PLKIESFYKLKKMLGM 439
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 104 bits (259), Expect = 3e-22
Identities = 58/137 (42%), Positives = 78/137 (56%)
Frame = -1
Query: 875 PKGFKSAMKHPHWLPAMEDELSALHKKFTWTLVPRPYTTNVVGSK*VFRTKFHSDGTVER 934
P+ ++ AM+ W ++ E A+ K TW P V S+ +F K+ +DG++ER
Sbjct: 558 PRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRWIFTIKYKADGSIER 379
Query: 935 LKTCLVAQGLTQIPGFDYSLTFSPVVKATTVRLILSLVVLND*QLHQLDVKNAFLHGHLT 994
KT LVA+G T G DY TF+PV K T+R++LSL V L Q+DVKNAFL G L
Sbjct: 378 KKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQMDVKNAFLQGELE 199
Query: 995 ETVYMEQPHGFVDLVSR 1011
+ VYM P G LV R
Sbjct: 198 DEVYMYPPPGLEHLVKR 148
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 66.6 bits (161), Expect(2) = 5e-19
Identities = 31/76 (40%), Positives = 48/76 (62%)
Frame = -2
Query: 932 VERLKTCLVAQGLTQIPGFDYSLTFSPVVKATTVRLILSLVVLND*QLHQLDVKNAFLHG 991
+ R K+ LV QG Q G DY FSPV + +R++++ +L+Q+DVK+AF++G
Sbjct: 424 ITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFING 245
Query: 992 HLTETVYMEQPHGFVD 1007
L E V+++QP GF D
Sbjct: 244 DLKEEVFVKQPPGFED 197
Score = 47.4 bits (111), Expect(2) = 5e-19
Identities = 20/51 (39%), Positives = 30/51 (58%)
Frame = -3
Query: 875 PKGFKSAMKHPHWLPAMEDELSALHKKFTWTLVPRPYTTNVVGSK*VFRTK 925
PK K A++ W+ +M++EL + W LVPRP V+G++ VFR K
Sbjct: 585 PKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTRWVFRNK 433
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 93.2 bits (230), Expect = 6e-19
Identities = 51/166 (30%), Positives = 89/166 (52%), Gaps = 2/166 (1%)
Frame = +1
Query: 1199 QAVKRIIRYVCAMQHFGLTFRRTSSP--AVLGYSDADWARCTDHRRSTYGYAIFLGYNLL 1256
QA+K +++Y+ L + + + A+ GY DAD+A D R+S G+ L +
Sbjct: 1 QALKWVLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTI 180
Query: 1257 SWSAKKQPSVAHSSCESEYRAMANTASELVWLLNLLHELRVRLSAPPLFLSDNQSALFMA 1316
SW A +Q V S+ ++EY A + +WL ++ EL + + D+QSA+ +A
Sbjct: 181 SWKANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGITQEYVKIHC-DSQSAIHLA 357
Query: 1317 QNPVAHKHAKHIDLDCHFVRELVSSGRLAVRHVPTSLQLADIFTKV 1362
+ V H+ KHID+ HF+R+++ S + V + + AD+FTK+
Sbjct: 358 NHQVYHERTKHIDIRLHFIRDMIESKEIVVEKMASEENPADVFTKL 495
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 92.0 bits (227), Expect = 1e-18
Identities = 72/268 (26%), Positives = 126/268 (46%), Gaps = 10/268 (3%)
Frame = +3
Query: 861 QPTGLLTALHTVT*PKGFKSAMKHPHWLPAMEDELSALHKKFTWTLVPRPYTTNVVGSK* 920
Q G+LT P F+ A+K W +M +E+ A + TW L +G K
Sbjct: 9 QNLGMLTMTSD---PTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKW 179
Query: 921 VFRTKFHSDGTVERLKTCLVAQGLTQIPGFDYSLTFSPVVKATTVRLILSLVVLND*QLH 980
+F+TK + +G +E+ K LVA+G +Q G DY+ F+PV + T+R++++L
Sbjct: 180 IFKTKLNENGEIEKYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAA------- 338
Query: 981 QLDVKNAFLHGHLTETVYMEQ-PHGFVDLVSRLMCVG*TRLSTASNRRLVLGF--SA*AL 1037
Q+ + ME F+ + R+M * R+ + +R + G + A
Sbjct: 339 QIKRDGVCIS*M*KAHSCMEN*MRKFLLINHRVM---*RRVIS*RVKRALYGLKQAPRAW 509
Query: 1038 FSCVLVFRVVGLIHPCSFFY-------KGHITLYLLVYVDDIILTGSDPSLLT*FIACLN 1090
+S + + C + + +G L + +YVDD+I G+D ++ F +
Sbjct: 510 YSRIEAYFTKEGFEKCPYEHTLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMK 689
Query: 1091 DEFAIKYLGKLGYFLGLEITYTADGLFL 1118
EF + LGK+ YFLG+E+T G+++
Sbjct: 690 KEFNMSDLGKMHYFLGVEVTQNEKGIYI 773
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 60.8 bits (146), Expect(2) = 1e-18
Identities = 33/97 (34%), Positives = 52/97 (53%)
Frame = +3
Query: 1277 AMANTASELVWLLNLLHELRVRLSAPPLFLSDNQSALFMAQNPVAHKHAKHIDLDCHFVR 1336
++ E +W+ L+ EL + ++ D+QSAL +A+NP H KHI + HFVR
Sbjct: 228 SLPQACKEAIWMQRLMEELGHKQEQITVYC-DSQSALHIARNPAFHSRTKHIGIQYHFVR 404
Query: 1337 ELVSSGRLAVRHVPTSLQLADIFTKVLPRPLFDLFRS 1373
E+V G + ++ + T+ LAD TK + F RS
Sbjct: 405 EVVEEGSVDMQKIHTNDNLADAMTKSINTDKFIWCRS 515
Score = 51.6 bits (122), Expect(2) = 1e-18
Identities = 32/77 (41%), Positives = 42/77 (53%)
Frame = +1
Query: 1201 VKRIIRYVCAMQHFGLTFRRTSSPAVLGYSDADWARCTDHRRSTYGYAIFLGYNLLSWSA 1260
VKRI+RY+ + F S V GY D+D+A D R+ST GY L +SW +
Sbjct: 1 VKRIMRYIKGTSGVAVCFGG-SELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLS 177
Query: 1261 KKQPSVAHSSCESEYRA 1277
K Q VA S+ E+EY A
Sbjct: 178 KLQTVVALSTTEAEYMA 228
>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza
sativa} [Oryza sativa (japonica cultivar-group)],
partial (8%)
Length = 426
Score = 88.6 bits (218), Expect = 2e-17
Identities = 44/115 (38%), Positives = 63/115 (54%)
Frame = +1
Query: 590 HTQAQNGRVERKHRHVLELGLAMLYHSHVSTSYWVHAFSTAVYIINRVPSKVLSDQIPFQ 649
HT QNG ER +R +LE AML + ++ S+W A TA Y+INR PS V+ + P +
Sbjct: 82 HTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTVIDLKTPME 261
Query: 650 LLFQVAPTYANFHPFGCRVFPCLRPYMKNKFSPRGTPCIFLGYNSHHKGFKCFDP 704
+ Y++ H FGC V+ + K P+ CIFLGY + KG+ +DP
Sbjct: 262 MWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYXLWDP 426
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 84.3 bits (207), Expect = 3e-16
Identities = 49/124 (39%), Positives = 68/124 (54%), Gaps = 3/124 (2%)
Frame = +1
Query: 1176 RPDLSYAVNTVSQFLQTPTVDHFQAVKRIIRYVCAMQHFGLTFRRTSSPAV---LGYSDA 1232
RPD+ Y+V+ +S+F+ P H A RI+RYV +GL F + V + YSD+
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 1233 DWARCTDHRRSTYGYAIFLGYNLLSWSAKKQPSVAHSSCESEYRAMANTASELVWLLNLL 1292
DW C D RRST GY +SW KKQP A SS E+EY A + +WL +++
Sbjct: 301 DW--CGD-RRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSVI 471
Query: 1293 HELR 1296
EL+
Sbjct: 472 KELK 483
>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 705
Score = 80.9 bits (198), Expect = 3e-15
Identities = 36/90 (40%), Positives = 54/90 (60%)
Frame = -2
Query: 630 AVYIINRVPSKVLSDQIPFQLLFQVAPTYANFHPFGCRVFPCLRPYMKNKFSPRGTPCIF 689
A Y+INR+P++VL DQ PF++L Q P+ FGC + + ++NK R +F
Sbjct: 704 ACYLINRIPTRVLKDQAPFEVLNQRKPSLTYMRVFGCLCYVLVPGELRNKLEARSRKAMF 525
Query: 690 LGYNSHHKGFKCFDPTTSRTYVSRHAQFDE 719
+GY++ KG+KC+DP R VSR +F E
Sbjct: 524 IGYSTTQKGYKCYDPEARRVLVSRDVKFIE 435
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 54.3 bits (129), Expect(2) = 5e-13
Identities = 31/78 (39%), Positives = 39/78 (49%)
Frame = +1
Query: 1065 LLVYVDDIILTGSDPSLLT*FIACLNDEFAIKYLGKLGYFLGLEITYTADGLFLGHAKYA 1124
L+VYVDDI LTG + L +EF IK LG L YFLG+E+ G + KY
Sbjct: 121 LIVYVDDIFLTGDHGK*IKRLKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYV 300
Query: 1125 HDLLSHALMLEASHVLTP 1142
DLL M+ + P
Sbjct: 301 LDLLKETRMIGCKTIRDP 354
Score = 39.3 bits (90), Expect(2) = 5e-13
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +2
Query: 1141 TPLAAGSHLVSSGEG-YSDPTHYRSLVGALQYLTITRPDLSYAVNTVSQFL 1190
TP+ A L + G D Y+ LVG L YL+ TRPD+S+ V T+SQF+
Sbjct: 350 TPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQFM 502
>TC92872
Length = 923
Score = 72.8 bits (177), Expect = 9e-13
Identities = 46/163 (28%), Positives = 83/163 (50%), Gaps = 10/163 (6%)
Frame = +1
Query: 17 ITVKLNSGNFLLWSKQVTAILQNQNLFDIVDPIVAPPSEFMLQPVSSALHHVVPAPNPLF 76
IT KL+ NF W +QVT +L + +D +E + +++ V APNP +
Sbjct: 97 ITFKLSRKNFRAWKRQVTTLLAGIEVMGHIDGTTPIQTE-------TIINNGVSAPNPDY 255
Query: 77 VQWQARDRNVNSLLLSSLTEEALSETLSATTARDVWTALHSAYASRNKAREMRLRDELQL 136
+W D+ + +LLLSS+TE S TAR +W A+ S + + +++ M + +++Q
Sbjct: 256 TKWFTLDQLIINLLLSSMTEADSISFASYETARTLWVAIESQFNNTSRSHVMSVTNQIQR 435
Query: 137 MRRGSLSVSEYGRKIR----------*SVANDDKVHWFLRGLG 169
+G S+++Y ++ S+++DD + L GLG
Sbjct: 436 CTKGDKSITDYLFSVKSLADELAVIDKSLSDDDITLFVLNGLG 564
Score = 32.3 bits (72), Expect = 1.3
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 221 PTRSSGSQ-SSGGGHRGNSSSGSRPRRDNGGSHCRGSYTP-RCQLCRKQGH 269
P+ G+ S H G+++ GS R G + RG+ P RCQLC GH
Sbjct: 770 PSTGRGNNFSKQSQHHGSNTRGSNYRGRGRGFNSRGNRPPPRCQLCSLLGH 922
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 70.1 bits (170), Expect = 6e-12
Identities = 36/98 (36%), Positives = 58/98 (58%)
Frame = +2
Query: 899 HKKFTWTLVPRPYTTNVVGSK*VFRTKFHSDGTVERLKTCLVAQGLTQIPGFDYSLTFSP 958
++K T LV +P +G + +++ K + DGT+ + K LVA+G + G D+ F+P
Sbjct: 44 YQKQTLKLVKKPTGVKPIGLRWIYKIKRNEDGTLIKYKARLVAKGYVKQQGIDFDEVFAP 223
Query: 959 VVKATTVRLILSLVVLND*QLHQLDVKNAFLHGHLTET 996
VV+ T+ L+L+L N +H +DVK AFL+GH T
Sbjct: 224 VVRIETI*LLLALAATNGC*IHHIDVKIAFLNGHFVGT 337
>BE941052 weakly similar to PIR|B85188|B85 retrotransposon like protein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 480
Score = 68.6 bits (166), Expect = 2e-11
Identities = 36/79 (45%), Positives = 46/79 (57%)
Frame = +2
Query: 1299 LSAPPLFLSDNQSALFMAQNPVAHKHAKHIDLDCHFVRELVSSGRLAVRHVPTSLQLADI 1358
+S L D SA ++ NPV H KHI +D HFVR+LV G+L V+HV T QLAD
Sbjct: 5 ISQSGLLRCDYLSATYLTHNPVYHSRMKHISIDIHFVRDLVQQGKLKVQHVCTVDQLADC 184
Query: 1359 FTKVLPRPLFDLFRSKLRV 1377
TK L + L R+K+ V
Sbjct: 185 LTKPLSKSRHQLLRNKIGV 241
>BF519055 similar to GP|21592754|gb| unknown {Arabidopsis thaliana}, partial
(30%)
Length = 675
Score = 62.8 bits (151), Expect = 9e-10
Identities = 31/78 (39%), Positives = 48/78 (60%)
Frame = -3
Query: 1157 SDPTHYRSLVGALQYLTITRPDLSYAVNTVSQFLQTPTVDHFQAVKRIIRYVCAMQHFGL 1216
+D S+VGAL Y+T+T PDLS+++N SQF+ PT +FQ +K++ M+H L
Sbjct: 649 ADSKLVHSIVGALLYITVTCPDLSFSINKPSQFMHKPTQINFQQLKKV------MRHPKL 488
Query: 1217 TFRRTSSPAVLGYSDADW 1234
T ++ + +SDADW
Sbjct: 487 TIKKLFDLQIYAFSDADW 434
>BG587141 similar to PIR|H86461|H86 hypothetical protein AAF32440.1 [imported]
- Arabidopsis thaliana, partial (20%)
Length = 731
Score = 60.5 bits (145), Expect = 4e-09
Identities = 33/87 (37%), Positives = 46/87 (51%)
Frame = +3
Query: 1282 ASELVWLLNLLHELRVRLSAPPLFLSDNQSALFMAQNPVAHKHAKHIDLDCHFVRELVSS 1341
A + +WL +LL E+ + DNQS + + +NPV H HI HF+RE V +
Sbjct: 129 ARQAMWLQDLLSEVTWEPCEEVVIRIDNQSVIALTRNPVFHGRGNHIHKRYHFIRECVEN 308
Query: 1342 GRLAVRHVPTSLQLADIFTKVLPRPLF 1368
G++ V HVP A I TK L R +F
Sbjct: 309 GQVEVEHVPGEKHRAYI*TKALGRIIF 389
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.325 0.138 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,269,803
Number of Sequences: 36976
Number of extensions: 897364
Number of successful extensions: 19492
Number of sequences better than 10.0: 637
Number of HSP's better than 10.0 without gapping: 6663
Number of HSP's successfully gapped in prelim test: 306
Number of HSP's that attempted gapping in prelim test: 1506
Number of HSP's gapped (non-prelim): 10925
length of query: 1380
length of database: 9,014,727
effective HSP length: 108
effective length of query: 1272
effective length of database: 5,021,319
effective search space: 6387117768
effective search space used: 6387117768
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)
Lotus: description of TM0019a.6