BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0018.4
(408 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC86045 similar to PIR|T46225|T46225 alpha NAC-like protein - Ar... 36 0.024
TC76936 similar to GP|20160782|dbj|BAB89723. putative nascent po... 35 0.040
TC93118 homologue to GP|14587596|gb|AAK70588.1 NADH dehydrogenas... 34 0.090
TC78468 similar to GP|21594872|gb|AAM66051.1 unknown {Arabidopsi... 33 0.26
TC86937 weakly similar to PIR|T04921|T04921 hypothetical protein... 31 0.76
CB894327 homologue to GP|8777436|dbj| gb|AAC78547.1~gene_id:MHM1... 31 0.99
TC89735 similar to GP|19569060|gb|AAL92018.1 UPF1 {Arabidopsis t... 31 0.99
TC85800 similar to GP|11320830|dbj|BAB18313. putative WRKY DNA b... 31 0.99
TC89480 similar to GP|20260684|gb|AAM13240.1 unknown protein {Ar... 30 1.3
BE248411 30 1.7
TC86635 weakly similar to GP|9758600|dbj|BAB09233.1 gene_id:MDF2... 30 1.7
TC87237 similar to GP|160409|gb|AAA29651.1|| mature-parasite-inf... 30 2.2
TC89048 weakly similar to PIR|T46215|T46215 hypothetical protein... 29 2.9
TC92575 weakly similar to GP|21428434|gb|AAM49877.1 LD13350p {Dr... 29 3.8
TC91658 similar to GP|14329812|emb|CAC40753. putative nucleosome... 28 4.9
AW774261 weakly similar to EGAD|146423|156 vitellogenin {Anolis ... 28 6.4
TC80836 similar to GP|23499268|emb|CAD51348. hypothetical protei... 28 6.4
TC77663 similar to GP|12744987|gb|AAK06873.1 unknown protein {Ar... 28 6.4
TC77438 homologue to PIR|T06807|T06807 nucleosome assembly prote... 28 6.4
CA859892 similar to GP|23510639|em hypothetical protein {Plasmod... 28 6.4
>TC86045 similar to PIR|T46225|T46225 alpha NAC-like protein - Arabidopsis
thaliana, partial (69%)
Length = 1166
Score = 36.2 bits (82), Expect = 0.024
Identities = 29/125 (23%), Positives = 60/125 (47%), Gaps = 5/125 (4%)
Frame = +1
Query: 279 YSIKKNLVNDEFIDM----IQLADKVRRVEKLRLEKY-KPEEVFQGEESSCIRATQNSEI 333
+SI K + ID ++ ++ V++ L+K +PEE +++ I ++ +
Sbjct: 76 FSISKTMAPGPVIDAPATESEVEQQIPSVDETTLKKKPQPEE----DDAPIIEDVKDDDK 243
Query: 334 GQDEVDQSDEDNDSDENEVNMAEFKPKSPYTYEGENKRKIPAKSFRGLKTTSDYQRVMVK 393
++ D+ D+D D D+ E +A E ++++ A GLK + RV +K
Sbjct: 244 DDEDDDEDDDDEDDDDKEDALAGADGSKQSRSEKKSRK---AMLKLGLKPVTGVSRVTIK 414
Query: 394 RSQNL 398
R++N+
Sbjct: 415 RTKNI 429
>TC76936 similar to GP|20160782|dbj|BAB89723. putative nascent polypeptide
associated complex alpha chain {Oryza sativa (japonica
cultivar-group)}, partial (86%)
Length = 914
Score = 35.4 bits (80), Expect = 0.040
Identities = 20/63 (31%), Positives = 31/63 (48%)
Frame = +3
Query: 336 DEVDQSDEDNDSDENEVNMAEFKPKSPYTYEGENKRKIPAKSFRGLKTTSDYQRVMVKRS 395
DE D+ D+D D D E + +S T + RK K G+K + RV +K+S
Sbjct: 174 DEDDEDDDDEDDDNAEGFEGDASGRSKQTRSEKKSRKAMLKL--GMKAVTGVSRVTIKKS 347
Query: 396 QNL 398
+N+
Sbjct: 348 KNI 356
>TC93118 homologue to GP|14587596|gb|AAK70588.1 NADH dehydrogenase subunit 3
{Microcebus rufus}, partial (10%)
Length = 567
Score = 34.3 bits (77), Expect = 0.090
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +3
Query: 126 SFTQHEVQNFSQNEPQNLSQDQNFGPNEVLNGQENSVEKQPHNFDQNLDNNVLVNRNQND 185
S TQ++ QN + N+ +SQ +N PN+ L + + N +Q+ V N N D
Sbjct: 186 SLTQNQNQNNNHNQNPFMSQIEN--PNQTLEQAFSRLSVANPNPNQSFGYGVANNLNDYD 359
Query: 186 YGGPQNVANAVEEVLNH-HGFNVGYVNRPNFTSP 218
Y G + +V N+ +G + ++P+F P
Sbjct: 360 YSG---LGVSVNPYYNYNYGIQLSNPSQPDFNRP 452
>TC78468 similar to GP|21594872|gb|AAM66051.1 unknown {Arabidopsis
thaliana}, partial (78%)
Length = 1249
Score = 32.7 bits (73), Expect = 0.26
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Frame = -3
Query: 128 TQHEVQNFSQNEPQNLSQDQNFGPNEVLNGQE-NSVEKQ------PHNFDQNLDNNVLVN 180
T +Q+ QN NLS N N++L N +EK PH +QN N +N
Sbjct: 713 TLFPLQHPRQNSLSNLSSSNNINLNQILQKLLINFMEKSRIRIRNPHVVNQN-PNIQPIN 537
Query: 181 RNQNDYGGPQNVANAVEEVLNHHGFNVGY 209
R N P N + +N +GFN+G+
Sbjct: 536 RFNN----PLNTVVEITGEINDNGFNLGF 462
>TC86937 weakly similar to PIR|T04921|T04921 hypothetical protein T9A21.30 -
Arabidopsis thaliana, partial (37%)
Length = 1309
Score = 31.2 bits (69), Expect = 0.76
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Frame = -3
Query: 310 KYKPEEVFQGEESSCIRATQNSEI---GQDEVDQSDEDNDSDENEVNMAEFKPKSPYTYE 366
K KP F S R+ ++SE+ +EVD + + + N VN+ EFK K +
Sbjct: 722 KRKPSMYF-----SL*RSVESSEMESTASNEVDMVRRNTELNINAVNL*EFKKKENNALK 558
Query: 367 GENKRKIPAKSFRGLKTTSDYQRVMVKRSQNLPRTSNPK 405
+ I K RG + TS Y+ + + P TS PK
Sbjct: 557 ANSVEHIREKVERG-RYTSPYEYI-----K*TPSTSKPK 459
>CB894327 homologue to GP|8777436|dbj| gb|AAC78547.1~gene_id:MHM17.7~similar
to unknown protein {Arabidopsis thaliana}, partial (3%)
Length = 128
Score = 30.8 bits (68), Expect = 0.99
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 321 ESSCIRATQNSEIGQDEVDQSDEDND 346
E+ C+ + IG+DEVD DED+D
Sbjct: 84 EAHCVGGAGDDIIGEDEVDDDDEDDD 7
>TC89735 similar to GP|19569060|gb|AAL92018.1 UPF1 {Arabidopsis thaliana},
partial (18%)
Length = 1479
Score = 30.8 bits (68), Expect = 0.99
Identities = 21/78 (26%), Positives = 33/78 (41%)
Frame = -2
Query: 58 QSIRQQIDESRYNMVSMLTQQMSTMLNPLIQNTQHLTRQLCRIADVFGAPPLNQAFHQVP 117
Q + +Q E ++MV P Q TQ Q+C V +Q +++P
Sbjct: 233 QQVHEQPREKEWHMVETGDHHGKEAREPFAQETQQDAIQVCDFHLV------DQKVYKIP 72
Query: 118 DYGQSVPLSFTQHEVQNF 135
QS L+ QH+ QN+
Sbjct: 71 FLYQSSDLNLCQHQNQNY 18
>TC85800 similar to GP|11320830|dbj|BAB18313. putative WRKY DNA binding
protein {Oryza sativa (japonica cultivar-group)}, partial
(37%)
Length = 2028
Score = 30.8 bits (68), Expect = 0.99
Identities = 15/59 (25%), Positives = 26/59 (43%)
Frame = +1
Query: 108 PLNQAFHQVPDYGQSVPLSFTQHEVQNFSQNEPQNLSQDQNFGPNEVLNGQENSVEKQP 166
P + FHQVP + Q +F Q ++Q++ L Q G + + ++QP
Sbjct: 1426 PQHAPFHQVPSFFQGQNQNFAQAAASLYNQSKFSGLQLSQEVGSSHLTTQASTQQQQQP 1602
>TC89480 similar to GP|20260684|gb|AAM13240.1 unknown protein {Arabidopsis
thaliana}, partial (43%)
Length = 1068
Score = 30.4 bits (67), Expect = 1.3
Identities = 22/93 (23%), Positives = 41/93 (43%)
Frame = +2
Query: 110 NQAFHQVPDYGQSVPLSFTQHEVQNFSQNEPQNLSQDQNFGPNEVLNGQENSVEKQPHNF 169
+Q +P + ++ L+ + ++ F+ N ++ + N N + NS +NF
Sbjct: 89 SQPLIPIPKFNLNLNLNPIKTQIFIFNNNNNFFINNNNNLF-NNLKQPNLNSNNNNSNNF 265
Query: 170 DQNLDNNVLVNRNQNDYGGPQNVANAVEEVLNH 202
+ +NNV N N N Y N N+ +NH
Sbjct: 266 INSNNNNVFCNSNSNSY----NNLNSSRIFINH 352
>BE248411
Length = 411
Score = 30.0 bits (66), Expect = 1.7
Identities = 23/79 (29%), Positives = 38/79 (47%), Gaps = 11/79 (13%)
Frame = +1
Query: 117 PDYGQSVPL--SFTQHEVQN-----FSQNEPQNLSQDQNFGPNEVLNGQENSVEKQPHNF 169
P G++V L S +H+ N ++P + S+D N N+ QEN + K H+
Sbjct: 73 PSVGKTVKLQNSLVKHDRANEMDILVPNDQPISGSEDHNMTENQY--SQENIISKHSHSR 246
Query: 170 DQNLDNNVLV----NRNQN 184
+QN D + NR++N
Sbjct: 247 EQNSDGATSMTDETNRSEN 303
>TC86635 weakly similar to GP|9758600|dbj|BAB09233.1
gene_id:MDF20.10~pir||T08929~similar to unknown protein
{Arabidopsis thaliana}, partial (32%)
Length = 1963
Score = 30.0 bits (66), Expect = 1.7
Identities = 25/105 (23%), Positives = 49/105 (45%), Gaps = 8/105 (7%)
Frame = +2
Query: 309 EKYKPEEVFQGEESSCIRATQNSEIGQDEVDQSDEDNDSD-----ENEV-NMAEFKPKSP 362
++ K E G E T++ G+++ +++D++ ++D E+E +E + KS
Sbjct: 839 KRQKKNEDSSGVEKKSTTDTEDESEGEEKNEENDDEPENDIPEKSEDETPQKSEREDKSD 1018
Query: 363 YTYEGEN--KRKIPAKSFRGLKTTSDYQRVMVKRSQNLPRTSNPK 405
E E+ KRK P+K+ K ++ + N R+ PK
Sbjct: 1019SGSESEDVKKRKRPSKTSSAKKESAGRSKTEKSTVTNKSRSPPPK 1153
>TC87237 similar to GP|160409|gb|AAA29651.1|| mature-parasite-infected
erythrocyte surface antigen {Plasmodium falciparum},
partial (2%)
Length = 2007
Score = 29.6 bits (65), Expect = 2.2
Identities = 44/226 (19%), Positives = 87/226 (38%), Gaps = 2/226 (0%)
Frame = +1
Query: 133 QNFSQNEPQNLSQDQNF-GPNEVLNGQENSVEKQPHNFDQNLDNNVLVNRNQNDYGGPQN 191
Q +N+ + SQ +N +E + QEN ++K + + ++ +N+ N
Sbjct: 202 QENEENKDEEKSQQENEENKDEEKSQQENELKKNEGGEKETGEITEEKSKQENEETSETN 381
Query: 192 VANAVEEVLNHHGFNVGYVNRPNFTSPFSEVVLQAELPRGGKVPKVTKFSGDTG-ESTVE 250
+ E N +G + N + + GG+ + K DT ++ V+
Sbjct: 382 SKDKENEESNQNGSDAKEQVGENHEQDSKQGTEETNGTEGGEKEEHDKIKEDTSSDNQVQ 561
Query: 251 HIARHMETRCSTHVPEFELVKMAIGGLDYSIKKNLVNDEFIDMIQLADKVRRVEKLRLEK 310
++ E R + + A+ N ++F DK + E LE
Sbjct: 562 DGEKNNEAREENY--SGDNASSAVVDNKSQESSNKTEEQF-------DKKEKNE-FELES 711
Query: 311 YKPEEVFQGEESSCIRATQNSEIGQDEVDQSDEDNDSDENEVNMAE 356
K + ES+ TQNS+ + E DQ+ +ND+ + + ++
Sbjct: 712 QKNSN--ETTESTDSTITQNSQGNESEKDQAQTENDTPKGSASESD 843
>TC89048 weakly similar to PIR|T46215|T46215 hypothetical protein T8P19.220
- Arabidopsis thaliana, partial (35%)
Length = 1329
Score = 29.3 bits (64), Expect = 2.9
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
Frame = +2
Query: 298 DKVRRVEKLRLEKYKPEEVFQGEESSCIRATQNSEIGQDEVDQSDED--------NDSDE 349
+K ++VE ++ KP+E + E A + + D + SD+D +D+D+
Sbjct: 329 NKPKQVENEAKDEPKPKEEVEVTEQDAEVAESDEKKEIDGHEDSDKDDEDEGGDEDDADD 508
Query: 350 NEVNMAEFKPKSPYTYEGENKRKIPAKSFRGLKTTSDYQRVMVKRSQNLPRTSNPKGI 407
+E A + K E K + S R + +R R+S+ KG+
Sbjct: 509 DEEEDAGEEKKGVKKESSEKKSPVTPTSDRPTRERKTVERYSEPSPSKFGRSSSSKGL 682
>TC92575 weakly similar to GP|21428434|gb|AAM49877.1 LD13350p {Drosophila
melanogaster}, partial (3%)
Length = 557
Score = 28.9 bits (63), Expect = 3.8
Identities = 22/86 (25%), Positives = 39/86 (44%), Gaps = 5/86 (5%)
Frame = -1
Query: 292 DMIQLADKVRRVEKLRLEKYKPEEVFQGEESSCIRATQNSEIGQDEVDQSDE----DNDS 347
D + ++ + E+ +E KPE EES + SE + + D+ D+ DN S
Sbjct: 452 DKLSEETELSKEERESVEAKKPELDAMDEESILEGKDEGSEKEKSQKDREDDKDKVDNKS 273
Query: 348 DENEVNMAE-FKPKSPYTYEGENKRK 372
+E + + + K + GEN +K
Sbjct: 272 NEENIKVEKRLKKRGKGKVNGENVKK 195
>TC91658 similar to GP|14329812|emb|CAC40753. putative nucleosome assembly
protein 1 {Atropa belladonna}, partial (46%)
Length = 583
Score = 28.5 bits (62), Expect = 4.9
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2
Query: 331 SEIGQDEVDQSDEDNDSDENEVNMAEFKPKSPYTYEGENKRKIPAKSFRGLK 382
S+ EVD+ DED D ++++ + + + E E++ K +KS RG K
Sbjct: 62 SDFDDIEVDEDDEDGDEEDDDDDDDDDDDEEDEDDEEEDEGKGKSKSKRGSK 217
>AW774261 weakly similar to EGAD|146423|156 vitellogenin {Anolis pulchellus},
partial (40%)
Length = 495
Score = 28.1 bits (61), Expect = 6.4
Identities = 17/70 (24%), Positives = 35/70 (49%)
Frame = +1
Query: 282 KKNLVNDEFIDMIQLADKVRRVEKLRLEKYKPEEVFQGEESSCIRATQNSEIGQDEVDQS 341
+K + +DE ID+ + D +E++ E+ + EE + E +EV+++
Sbjct: 262 EKTVESDEKIDLEEENDPEEEMEEIEYEEVEEEEEVEEIE--------------EEVEEN 399
Query: 342 DEDNDSDENE 351
+ED + +E E
Sbjct: 400 EEDAEEEEEE 429
>TC80836 similar to GP|23499268|emb|CAD51348. hypothetical protein {Plasmodium
falciparum 3D7}, partial (1%)
Length = 1193
Score = 28.1 bits (61), Expect = 6.4
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 330 NSEIGQDEVDQSDEDNDSDENEVNMAEF 357
N EIG D+ D+SD+D++SD E + F
Sbjct: 1024 NQEIGDDD-DESDDDDESDGEEQEIPYF 1104
>TC77663 similar to GP|12744987|gb|AAK06873.1 unknown protein {Arabidopsis
thaliana}, partial (11%)
Length = 1286
Score = 28.1 bits (61), Expect = 6.4
Identities = 20/72 (27%), Positives = 36/72 (49%)
Frame = +3
Query: 281 IKKNLVNDEFIDMIQLADKVRRVEKLRLEKYKPEEVFQGEESSCIRATQNSEIGQDEVDQ 340
+ +NL+ + ++++ +KVR EK +K K E+ + S ++ SE +
Sbjct: 339 LHQNLITEGGEELLRELEKVRAEEKELKKKMKQEKKKAKLKPSKMKTCNKSESSSSSSSE 518
Query: 341 SDEDNDSDENEV 352
S E +DSD EV
Sbjct: 519 S-ESSDSDCGEV 551
>TC77438 homologue to PIR|T06807|T06807 nucleosome assembly protein 1 - garden
pea, partial (93%)
Length = 1607
Score = 28.1 bits (61), Expect = 6.4
Identities = 14/37 (37%), Positives = 18/37 (47%)
Frame = +2
Query: 315 EVFQGEESSCIRATQNSEIGQDEVDQSDEDNDSDENE 351
E QGEE + + E E D DED D DE++
Sbjct: 1004 EAAQGEEFGDLDDEDDDEDDDAEDDDEDEDEDEDEDD 1114
>CA859892 similar to GP|23510639|em hypothetical protein {Plasmodium
falciparum 3D7}, partial (1%)
Length = 459
Score = 28.1 bits (61), Expect = 6.4
Identities = 18/63 (28%), Positives = 29/63 (45%), Gaps = 2/63 (3%)
Frame = +1
Query: 149 FGPNEVLNGQENSVEKQPHNFDQNLDNNVLVNRNQNDYGG--PQNVANAVEEVLNHHGFN 206
+ N +L+ +S + F N DNN N N +DYG P + ++ + +HH
Sbjct: 181 YNNNTLLSSSPSSYKANLLLFSNNNDNND-KNNNNDDYGATPPLSPSSPTFPIHHHHNNK 357
Query: 207 VGY 209
V Y
Sbjct: 358 VSY 366
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.312 0.130 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,258,990
Number of Sequences: 36976
Number of extensions: 127579
Number of successful extensions: 643
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of query: 408
length of database: 9,014,727
effective HSP length: 98
effective length of query: 310
effective length of database: 5,391,079
effective search space: 1671234490
effective search space used: 1671234490
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0018.4