TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0017.17
         (167 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC77405 similar to GP|21360368|gb|AAM47506.1 iron-stress related...   250  2e-67
BQ141677                                                               28  1.3
TC91597 similar to GP|21323350|dbj|BAB97978. Hypothetical protei...    28  2.2
AL366500                                                               27  2.9
TC85083 similar to GP|9758917|dbj|BAB09454.1 gene_id:MXI22.6~unk...    27  3.8
TC93005                                                                27  5.0
BG644542 similar to PIR|D84681|D846 hypothetical protein At2g281...    27  5.0
TC79048 weakly similar to GP|15450639|gb|AAK96591.1 AT5g62520/K1...    27  5.0
TC93106 weakly similar to PIR|C96797|C96797 unknown protein [imp...    26  6.5
TC79821 similar to GP|6681331|gb|AAF23248.1| B' regulatory subun...    26  6.5
BG647861 similar to GP|6815055|dbj EST AU081527(C53732) correspo...    26  8.5
TC86164 weakly similar to GP|20514261|gb|AAM22959.1 tubulin fold...    26  8.5

>TC77405 similar to GP|21360368|gb|AAM47506.1 iron-stress related protein
           {Citrus junos}, partial (13%)
          Length = 944

 Score =  250 bits (638), Expect = 2e-67
 Identities = 129/172 (75%), Positives = 139/172 (80%), Gaps = 5/172 (2%)
 Frame = +3

Query: 1   MLENLHPAPPSES---VKRYAPPNQRNRSTNRRK--SSDRLDRTNSIGNDLEKNQFASSR 55
           MLEN    PP      VKRYAPPNQRNRS N R+  SSDRLDR+NS+G+D+EKNQ ASS+
Sbjct: 75  MLENPQAQPPESGPVVVKRYAPPNQRNRSINNRRKSSSDRLDRSNSVGSDIEKNQVASSK 254

Query: 56  NVQVQDRIDAVSSNLVNENPYSRFVALDGCSCSAASQLLNDRWTAAIQSYNNSKDSPEKP 115
           N+QV D   A SSN+ NEN YSRF+AL GCS SAASQLL+DRWTA IQSYNN KDS EKP
Sbjct: 255 NIQVTDHGHASSSNIFNENHYSRFIALQGCSSSAASQLLSDRWTAVIQSYNNPKDSSEKP 434

Query: 116 VMYSGGTSVWTHFRLPHQIMSPAASAPPSVSQLDFLGELNRQMQSVNPSFST 167
           VMYSGGTSVWT FRLPHQIMSPAASA  SVSQLDFLGEL RQM S NPSFST
Sbjct: 435 VMYSGGTSVWTQFRLPHQIMSPAASASSSVSQLDFLGELRRQMHSANPSFST 590


>BQ141677 
          Length = 910

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 104 SYNNSKDSPEKPVMYSGGTSVWTHFRLPHQIMSPAASAPPSV 145
           +Y++    P KP++ +GGTS    F      +S A S PPS+
Sbjct: 57  TYDSDSSQPLKPLLLAGGTSTLLLF------ISAAESPPPSL 164


>TC91597 similar to GP|21323350|dbj|BAB97978. Hypothetical protein
           {Corynebacterium glutamicum ATCC 13032}, partial (5%)
          Length = 718

 Score = 27.7 bits (60), Expect = 2.2
 Identities = 20/71 (28%), Positives = 37/71 (51%), Gaps = 2/71 (2%)
 Frame = +3

Query: 10  PSESVKRYAPPNQRNRSTN--RRKSSDRLDRTNSIGNDLEKNQFASSRNVQVQDRIDAVS 67
           P +S +R    ++RN S N  R + +D    T ++  +L +++ + SRN+    RID + 
Sbjct: 267 PPQSWRRNLLRSRRNLSRNLPRNRRTDPSRSTRNLLRNLSRSRRSLSRNLLRSRRIDLLR 446

Query: 68  SNLVNENPYSR 78
           S   N +  +R
Sbjct: 447 SRRRNPSRSTR 479


>AL366500 
          Length = 520

 Score = 27.3 bits (59), Expect = 2.9
 Identities = 11/29 (37%), Positives = 16/29 (54%)
 Frame = -1

Query: 49  NQFASSRNVQVQDRIDAVSSNLVNENPYS 77
           N+F  SRN+ +Q        N++N N YS
Sbjct: 436 NRFH*SRNIYIQSFFQKKEKNIINHNSYS 350


>TC85083 similar to GP|9758917|dbj|BAB09454.1 gene_id:MXI22.6~unknown
           protein {Arabidopsis thaliana}, partial (8%)
          Length = 752

 Score = 26.9 bits (58), Expect = 3.8
 Identities = 17/38 (44%), Positives = 20/38 (51%)
 Frame = +3

Query: 11  SESVKRYAPPNQRNRSTNRRKSSDRLDRTNSIGNDLEK 48
           SES    A   +R RS +RR S    DR NSIG   +K
Sbjct: 459 SESESTPASSLRRGRSVSRRSSGVGDDRRNSIGGGGKK 572


>TC93005 
          Length = 702

 Score = 26.6 bits (57), Expect = 5.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 126 THFRLPHQIMSPAASAPPSVSQLDFLGELN 155
           TH ++PH ++  A    P +S +DF+   N
Sbjct: 559 THLQIPHLLLFNAFRILPLLSSIDFISNTN 470


>BG644542 similar to PIR|D84681|D846 hypothetical protein At2g28150
           [imported] - Arabidopsis thaliana, partial (5%)
          Length = 781

 Score = 26.6 bits (57), Expect = 5.0
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -3

Query: 18  APPNQRNRSTNRRKSSDRLDRTNSIG----NDLEKNQFASSRNVQVQDRIDAVSSNLVNE 73
           +PP++ +RS     S    DRTN  G         + F   + VQ+++R+ + +  ++  
Sbjct: 422 SPPSEFSRSPISDGSRSSRDRTNDSGIRQKQSTRLDSFRDEKVVQIEERLASGARVIIQS 243

Query: 74  NP 75
            P
Sbjct: 242 KP 237


>TC79048 weakly similar to GP|15450639|gb|AAK96591.1 AT5g62520/K19B1_13
           {Arabidopsis thaliana}, partial (19%)
          Length = 1709

 Score = 26.6 bits (57), Expect = 5.0
 Identities = 14/38 (36%), Positives = 20/38 (51%)
 Frame = -3

Query: 5   LHPAPPSESVKRYAPPNQRNRSTNRRKSSDRLDRTNSI 42
           L+P PPS S + Y    ++ R +  RKS   L R N +
Sbjct: 573 LYPHPPSSSEQVYWNRGRQMRHSRNRKSLIHLRRRNHV 460


>TC93106 weakly similar to PIR|C96797|C96797 unknown protein [imported] -
           Arabidopsis thaliana, partial (21%)
          Length = 792

 Score = 26.2 bits (56), Expect = 6.5
 Identities = 19/68 (27%), Positives = 34/68 (49%), Gaps = 1/68 (1%)
 Frame = +3

Query: 9   PPSESVKRYAP-PNQRNRSTNRRKSSDRLDRTNSIGNDLEKNQFASSRNVQVQDRIDAVS 67
           P S+ V  Y    NQR R    + + D   R  ++ N+L +   + +R  Q+Q+ + + S
Sbjct: 45  PESDPVWHYLNIQNQRIRGLLEQCTLDHEARMENLRNELHEKALSDARWKQIQEEL-SES 221

Query: 68  SNLVNENP 75
           S++ N  P
Sbjct: 222 SDINNSYP 245


>TC79821 similar to GP|6681331|gb|AAF23248.1| B' regulatory subunit of PP2A
           (AtB'beta) {Arabidopsis thaliana}, partial (36%)
          Length = 860

 Score = 26.2 bits (56), Expect = 6.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 73  ENPYSRFVALDGCSCSAASQLLNDRWTAAI 102
           ENP  + + L+G SC  ASQ +  RW   +
Sbjct: 198 ENPNPKLMNLEGESCDVASQ-VKKRWIGVV 112


>BG647861 similar to GP|6815055|dbj EST AU081527(C53732) corresponds to a
           region of the predicted gene.~hypothetical protein,
           partial (72%)
          Length = 733

 Score = 25.8 bits (55), Expect = 8.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 84  GCSCSAASQLLNDRWTAAIQSYNNSKDSPEKPVMYS 119
           GCSCS+ +   N   +  I S+   KDS  K  ++S
Sbjct: 305 GCSCSSTACFFNLPRSTVITSFRR*KDSEIKNFIHS 412


>TC86164 weakly similar to GP|20514261|gb|AAM22959.1 tubulin folding
           cofactor C {Arabidopsis thaliana}, partial (8%)
          Length = 1369

 Score = 25.8 bits (55), Expect = 8.5
 Identities = 11/27 (40%), Positives = 16/27 (58%)
 Frame = +2

Query: 7   PAPPSESVKRYAPPNQRNRSTNRRKSS 33
           P PP  +V    PP  R RS+ RR+++
Sbjct: 575 PCPPHTAVPSSPPPPPRMRSSPRRRTT 655


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.311    0.125    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,233,385
Number of Sequences: 36976
Number of extensions: 67601
Number of successful extensions: 310
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of query: 167
length of database: 9,014,727
effective HSP length: 89
effective length of query: 78
effective length of database: 5,723,863
effective search space: 446461314
effective search space used: 446461314
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)