TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0016.9
         (219 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CB893203                                                               42  2e-04

>CB893203 
          Length = 800

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 18/86 (20%), Positives = 40/86 (45%)
 Frame = -3

Query: 80  ADHRPVSLALGSHDFGPKPFCFFNYWLMEDGFKKMVEEWWSSAVVEGWSNFALMQKLKGL 139
           +D  P+ L +   ++GP+       W    G+   V++ W+S  V  W  + L +K K +
Sbjct: 735 SDRCPIMLTIDEGNWGPRLHHMLKCWADLPGYHLFVKDKWNSFQVSRWGGYVLKEK*KMV 556

Query: 140 KVKIREWKENRGIRGSEKIKGLEDNL 165
           +  +++W  N       +I  + +++
Sbjct: 555 RNNLKDWHHNHTRNLDARINDIRESI 478


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.329    0.145    0.479 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,306,221
Number of Sequences: 36976
Number of extensions: 107410
Number of successful extensions: 621
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of query: 219
length of database: 9,014,727
effective HSP length: 92
effective length of query: 127
effective length of database: 5,612,935
effective search space: 712842745
effective search space used: 712842745
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.2 bits)