TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0016.10
         (196 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC89266 weakly similar to GP|18700101|gb|AAL77662.1 AT5g65760/MP...    28  3.0
TC87526 similar to GP|20856975|gb|AAM26693.1 At5g26743 {Arabidop...    27  3.9
TC88006 similar to GP|16649027|gb|AAL24365.1 unknown protein {Ar...    27  6.6
TC86478 similar to GP|3688193|emb|CAA08995.1 MAP3K alpha 1 prote...    27  6.6

>TC89266 weakly similar to GP|18700101|gb|AAL77662.1 AT5g65760/MPA24_11
           {Arabidopsis thaliana}, partial (35%)
          Length = 1261

 Score = 27.7 bits (60), Expect = 3.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 99  NVWIRNPSEHNQHNRVGASGKDTNNLA 125
           NVWI +P   +QH+ +G+S  +   L+
Sbjct: 928 NVWILHPEPSSQHSSIGSSKHNNRGLS 848


>TC87526 similar to GP|20856975|gb|AAM26693.1 At5g26743 {Arabidopsis
           thaliana}, partial (12%)
          Length = 792

 Score = 27.3 bits (59), Expect = 3.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 20  KIGGGVTLKFGLPLVNGV 37
           K G G TL FG+P++NG+
Sbjct: 601 KTGTGKTLAFGIPIINGL 654


>TC88006 similar to GP|16649027|gb|AAL24365.1 unknown protein {Arabidopsis
           thaliana}, partial (65%)
          Length = 1153

 Score = 26.6 bits (57), Expect = 6.6
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = -1

Query: 73  KPKITSKYVKPNVWVRGMINEARVGPNVWIRNPSEHNQHNRVGASGKDTNNLASS 127
           KPK+ S Y KP++ ++ ++      P+  +++    N+ N   ++G++   L  S
Sbjct: 892 KPKLLSCYYKPSIMMQPLL*RQFPDPHKHLKSQVVLNKMNHNSSTGREQEALIRS 728


>TC86478 similar to GP|3688193|emb|CAA08995.1 MAP3K alpha 1 protein kinase
            {Brassica napus}, partial (52%)
          Length = 2266

 Score = 26.6 bits (57), Expect = 6.6
 Identities = 20/90 (22%), Positives = 37/90 (40%), Gaps = 6/90 (6%)
 Frame = -2

Query: 27   LKFGLPLVNGVGGKEIQSIEAPGVCNTLSIGPSNENMAQFDLPSLAKPKITSKYVKPNV- 85
            +++GLPL   +   E+  +  P   + +S   S   +A   L SL    +  +   P   
Sbjct: 1470 IQYGLPLNESIEAAEVICLAIPKSASLISPLGSTSMLAP--LISLCTVFLPCR*ASPETI 1297

Query: 86   -----WVRGMINEARVGPNVWIRNPSEHNQ 110
                 W+ G +N      N+WI  P  +++
Sbjct: 1296 CLV*FWITGSLNGPYS*SNLWIEPPETYSK 1207


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.310    0.130    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,774,470
Number of Sequences: 36976
Number of extensions: 70961
Number of successful extensions: 222
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of query: 196
length of database: 9,014,727
effective HSP length: 91
effective length of query: 105
effective length of database: 5,649,911
effective search space: 593240655
effective search space used: 593240655
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)