TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0012b.1
         (307 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC77111 similar to SP|Q9SKP6|TPIC_ARATH Triosephosphate isomeras...   538  e-153
TC85539 similar to SP|P21820|TPIS_COPJA Triosephosphate isomeras...   321  2e-88
BG587499 weakly similar to PIR|A23448|ISC triose-phosphate isome...   253  8e-68
TC77113 homologue to GP|21615409|emb|CAD33924. alpha-expansin 4 ...    97  8e-21
BG645072 homologue to PIR|T48355|T48 transitional endoplasmic re...    30  1.2
AW690346 weakly similar to GP|10177738|dbj gene_id:MSG15.11~pir|...    30  1.5
TC85439 homologue to SP|P36181|HS80_LYCES Heat shock cognate pro...    29  2.0
TC88091 homologue to SP|P51819|HS83_PHANI Heat shock protein 83....    28  5.8
TC82480 similar to GP|18176324|gb|AAL60023.1 putative serine/thr...    28  5.8
BI271861                                                               27  7.6
AL376162 similar to PIR|D84555|D845 probable protein kinase [imp...    27  9.9
TC86788 similar to GP|21593695|gb|AAM65662.1 unknown {Arabidopsi...    27  9.9

>TC77111 similar to SP|Q9SKP6|TPIC_ARATH Triosephosphate isomerase
           chloroplast precursor (EC 5.3.1.1) (TIM). [Mouse-ear
           cress], partial (85%)
          Length = 1294

 Score =  538 bits (1385), Expect = e-153
 Identities = 271/308 (87%), Positives = 286/308 (91%), Gaps = 2/308 (0%)
 Frame = +1

Query: 2   ATSLASQLSVGLRR-PSPKLDSLNSQSTH-SLFHSNLRLPISSSKPSRSVIAMAGSGKFF 59
           +TSL SQLS+GLRR PSPKLDS  S +      H NLRL ISS KPSR+VIAMAGSGKFF
Sbjct: 106 STSLVSQLSIGLRRHPSPKLDSFTSTNPFFDAIHPNLRLSISSPKPSRTVIAMAGSGKFF 285

Query: 60  VGGNWKCNGTKDSISKLVADLNSAKLEPDVDVVVAPPFVYIDQVKNSITDRIEVSAQNSW 119
           VGGNWKCNGTKDSISKL++DLN+AKLEPDVDVVVAPPFVYIDQVK SITDRIE+S QNSW
Sbjct: 286 VGGNWKCNGTKDSISKLISDLNNAKLEPDVDVVVAPPFVYIDQVKTSITDRIEISGQNSW 465

Query: 120 VSKGGAFTGEISVEQLKDHGVKWVILGHSERRHIIGEKDEFIGKKAAYALTEGLGVIACI 179
           V KGGAFTGEISVEQLKD G KWVILGHSERRH+IGEKDEFIGKKAAYAL+EGLGVIACI
Sbjct: 466 VGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACI 645

Query: 180 GELLEEREAGKTFDVCFQQLKAYADAVPSWDNIVIAYEPVWAIGTGKVASPEQAQEVHAA 239
           GELLEEREAGKTFDVCFQQLKAYADAVPSWDNIVIAYEPVWAIGTGKVASPEQAQEVH A
Sbjct: 646 GELLEEREAGKTFDVCFQQLKAYADAVPSWDNIVIAYEPVWAIGTGKVASPEQAQEVHVA 825

Query: 240 IRDWLQKNVSAEVASKTRIIYGGSVNGGNSSELAKKEDIDGFLVGGASLKGPEFATIINS 299
           +RDWL+ NVSAEVASKTRIIYGGSVNGGNS++LAKKEDIDGFLVGGASLKGPEFATI+NS
Sbjct: 826 LRDWLKNNVSAEVASKTRIIYGGSVNGGNSADLAKKEDIDGFLVGGASLKGPEFATIVNS 1005

Query: 300 VTSKKVAA 307
           VTSKKV A
Sbjct: 1006VTSKKVTA 1029


>TC85539 similar to SP|P21820|TPIS_COPJA Triosephosphate isomerase
           cytosolic (EC 5.3.1.1) (TIM). [Japanese goldthread]
           {Coptis japonica}, complete
          Length = 1195

 Score =  321 bits (823), Expect = 2e-88
 Identities = 161/250 (64%), Positives = 192/250 (76%), Gaps = 2/250 (0%)
 Frame = +1

Query: 57  KFFVGGNWKCNGTKDSISKLVADLNSAKL--EPDVDVVVAPPFVYIDQVKNSITDRIEVS 114
           KFFVGGNWKCNGT + + K+V  LN A++  E  V+VVV+PP+V++  VK+ +     V+
Sbjct: 82  KFFVGGNWKCNGTTEEVKKIVGTLNEAQVPGEDVVEVVVSPPYVFLPFVKSLLRSDFHVA 261

Query: 115 AQNSWVSKGGAFTGEISVEQLKDHGVKWVILGHSERRHIIGEKDEFIGKKAAYALTEGLG 174
           AQN+WV KGGA+TGEIS E L +  + WVILGHSERR ++ E +EF+G K AYAL+ G  
Sbjct: 262 AQNAWVRKGGAYTGEISAEMLVNLDIPWVILGHSERRQLLNETNEFVGDKVAYALSLGRK 441

Query: 175 VIACIGELLEEREAGKTFDVCFQQLKAYADAVPSWDNIVIAYEPVWAIGTGKVASPEQAQ 234
           VIACIGE LE+REAG T  V  +Q KA AD V +WDN+V+AYEPVWAIGTGKVASP QAQ
Sbjct: 442 VIACIGETLEQREAGTTIAVVAEQTKAIADKVSNWDNVVLAYEPVWAIGTGKVASPAQAQ 621

Query: 235 EVHAAIRDWLQKNVSAEVASKTRIIYGGSVNGGNSSELAKKEDIDGFLVGGASLKGPEFA 294
           EVHAA+R W+  NV AEVA+  RIIYGGSVNGGNS ELA + DIDGFLVGGASLK PEF 
Sbjct: 622 EVHAALRKWVHDNVGAEVAASVRIIYGGSVNGGNSKELASQPDIDGFLVGGASLK-PEFI 798

Query: 295 TIINSVTSKK 304
            IINS T KK
Sbjct: 799 DIINSATVKK 828


>BG587499 weakly similar to PIR|A23448|ISC triose-phosphate isomerase (EC
           5.3.1.1) - chicken, partial (88%)
          Length = 797

 Score =  253 bits (645), Expect = 8e-68
 Identities = 138/240 (57%), Positives = 167/240 (69%), Gaps = 1/240 (0%)
 Frame = +2

Query: 60  VGGNWKCNGTKDSISKLVADLNSAKLEPDVDVVVAPPFVYIDQVKNSITDRIEVSAQNSW 119
           VGGN+K NG   S+ K+V +LN++    DV+VV+APP +Y+D V+ S+   IEV+AQN++
Sbjct: 2   VGGNFKMNGDHASLMKIVENLNTSNFAEDVEVVIAPPAIYLDFVRKSVRKEIEVAAQNAY 181

Query: 120 VSKGGAFTGEISVEQLKDHGVKWVILGHSERRHIIGEKDEFIGKKAAYALTEGLGVIACI 179
               GA+TGEIS E LKD  + WVILGHSERR I  E DE I  K ++AL  G+ VIACI
Sbjct: 182 KVSKGAYTGEISPEMLKDLNIGWVILGHSERRTIFNESDELIASKISHALEVGIKVIACI 361

Query: 180 GELLEEREAGKTFDVCFQQLKAYADAVPSWDNIVIAYEPVWAIGTGKVASPEQAQEVHAA 239
           GE LEEREAG T DV  +QL A +  V  W N+VIAYEPVWAIGTGKVA+PEQAQEVH  
Sbjct: 362 GERLEEREAGVTNDVVTKQLVAISQKVKDWTNVVIAYEPVWAIGTGKVATPEQAQEVHNY 541

Query: 240 IRDWLQKNVSAEVASKTRIIYGGSVNGGN-SSELAKKEDIDGFLVGGASLKGPEFATIIN 298
           IR+WL KNVS E +  TRIIYGG         +L K   +  F +GGASLK PEF TIIN
Sbjct: 542 IRNWLIKNVSEETSLITRIIYGGFGYWWEIHQDLPKN*ILMDF*LGGASLK-PEFVTIIN 718


>TC77113 homologue to GP|21615409|emb|CAD33924. alpha-expansin 4 {Cicer
           arietinum}, partial (27%)
          Length = 1070

 Score = 97.1 bits (240), Expect = 8e-21
 Identities = 47/51 (92%), Positives = 50/51 (97%)
 Frame = -3

Query: 257 RIIYGGSVNGGNSSELAKKEDIDGFLVGGASLKGPEFATIINSVTSKKVAA 307
           RIIYGGSVNGGNS++LAKKEDIDGFLVGGASLKGPEFATI+NSVTSKKV A
Sbjct: 378 RIIYGGSVNGGNSADLAKKEDIDGFLVGGASLKGPEFATIVNSVTSKKVTA 226


>BG645072 homologue to PIR|T48355|T48 transitional endoplasmic reticulum
           ATPase - Arabidopsis thaliana, partial (30%)
          Length = 798

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 15/51 (29%), Positives = 30/51 (58%)
 Frame = +3

Query: 20  LDSLNSQSTHSLFHSNLRLPISSSKPSRSVIAMAGSGKFFVGGNWKCNGTK 70
           +D+ N ++++ ++++N+ LPI  SKP +S +   G+       N+ C G K
Sbjct: 399 MDAENLKTSNFIWYTNINLPIKPSKPPKSRVDAIGT-ICCSHNNYMCTGFK 548


>AW690346 weakly similar to GP|10177738|dbj
           gene_id:MSG15.11~pir||C69291~similar to unknown protein
           {Arabidopsis thaliana}, partial (22%)
          Length = 338

 Score = 29.6 bits (65), Expect = 1.5
 Identities = 24/71 (33%), Positives = 32/71 (44%)
 Frame = +2

Query: 178 CIGELLEEREAGKTFDVCFQQLKAYADAVPSWDNIVIAYEPVWAIGTGKVASPEQAQEVH 237
           C  ELL+  + G    V   Q K +   VPSW    +  E +W IGT  V S E A +V 
Sbjct: 140 CYPELLDLADNGSLVLV---QKKRFGP-VPSWRTEFVEPEYIWLIGTTHV-SKESAMDVE 304

Query: 238 AAIRDWLQKNV 248
             ++     NV
Sbjct: 305 RVVKAVKPDNV 337


>TC85439 homologue to SP|P36181|HS80_LYCES Heat shock cognate protein 80.
            [Tomato] {Lycopersicon esculentum}, complete
          Length = 2401

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 21/95 (22%), Positives = 42/95 (44%)
 Frame = +2

Query: 99   YIDQVKNSITDRIEVSAQNSWVSKGGAFTGEISVEQLKDHGVKWVILGHSERRHIIGEKD 158
            Y+ ++K    D   ++ ++    +   F     +E+L+  G + + +  +   + +G+  
Sbjct: 1424 YVTRMKEGQNDIYYITGESKKAVENSPF-----LEKLRKKGYEVIYMVDAIDEYAVGQLK 1588

Query: 159  EFIGKKAAYALTEGLGVIACIGELLEEREAGKTFD 193
            EF GKK   A  EGL +     E  +  E  + FD
Sbjct: 1589 EFEGKKLVSATKEGLKLDESEDEKKKMDEQKEKFD 1693


>TC88091 homologue to SP|P51819|HS83_PHANI Heat shock protein 83. [Violet
           Japanese morning glory] {Pharbitis nil}, partial (77%)
          Length = 1813

 Score = 27.7 bits (60), Expect = 5.8
 Identities = 17/75 (22%), Positives = 35/75 (46%)
 Frame = +1

Query: 99  YIDQVKNSITDRIEVSAQNSWVSKGGAFTGEISVEQLKDHGVKWVILGHSERRHIIGEKD 158
           Y+ ++K    D   ++ ++    +   F     +E+LK  G + + +  +   + +G+  
Sbjct: 892 YVTRMKEGQKDIYYITGESKKAVENSPF-----LERLKKKGYEVLFMVDAIDEYAVGQLK 1056

Query: 159 EFIGKKAAYALTEGL 173
           E+ GKK   A  EGL
Sbjct: 1057EYDGKKLVSATKEGL 1101


>TC82480 similar to GP|18176324|gb|AAL60023.1 putative serine/threonine
           protein kinase {Arabidopsis thaliana}, partial (26%)
          Length = 700

 Score = 27.7 bits (60), Expect = 5.8
 Identities = 14/36 (38%), Positives = 20/36 (54%)
 Frame = -1

Query: 24  NSQSTHSLFHSNLRLPISSSKPSRSVIAMAGSGKFF 59
           N  S  SL+  +LRLP S  +PSR   ++  +G  F
Sbjct: 256 NPPSAMSLWTCSLRLPTSIERPSRPFCSLCANGLNF 149


>BI271861 
          Length = 623

 Score = 27.3 bits (59), Expect = 7.6
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -3

Query: 43  SKPSRSVIAMAGSGKFFVGGNWKCNGTKDSISKLVADLNS 82
           SKP R    MA + K  +  +WK NG K+S    VAD  S
Sbjct: 189 SKPMRITPRMAETYKSEIQSHWKWNGLKNS---FVADAGS 79


>AL376162 similar to PIR|D84555|D845 probable protein kinase [imported] -
           Arabidopsis thaliana, partial (10%)
          Length = 444

 Score = 26.9 bits (58), Expect = 9.9
 Identities = 31/123 (25%), Positives = 53/123 (42%), Gaps = 5/123 (4%)
 Frame = +1

Query: 3   TSLASQLSVG----LRRPSPKLDSLNSQSTHSLFHSNLRLPISSSKPSRSV-IAMAGSGK 57
           TS+A QL +     LRRP   L        H LF  +L+L  +SS+P   + I+ +   K
Sbjct: 10  TSIAFQLGMHWK*MLRRPKMFLCIKGYNIWHELFLVHLQLKSASSRPMHEITISTSDKPK 189

Query: 58  FFVGGNWKCNGTKDSISKLVADLNSAKLEPDVDVVVAPPFVYIDQVKNSITDRIEVSAQN 117
            F       +    +I +  A         DV VV       I+ +K+ +T +++   ++
Sbjct: 190 LFSQLTTLLSEIGLNIQEAHAFSTLDGYSLDVFVVDGWAGQDIESLKHEVTKKMQKLEED 369

Query: 118 SWV 120
            W+
Sbjct: 370 QWL 378


>TC86788 similar to GP|21593695|gb|AAM65662.1 unknown {Arabidopsis
           thaliana}, partial (78%)
          Length = 1705

 Score = 26.9 bits (58), Expect = 9.9
 Identities = 21/64 (32%), Positives = 31/64 (47%), Gaps = 1/64 (1%)
 Frame = +2

Query: 38  LPISSSKPSRSVIAMAGSGKFFVGGNWKCNGTKDSISKLVADLNSAKLEPDVDVV-VAPP 96
           +P+    P + V ++A SG     GN   +G K  I +    L  + L  DVD+V +  P
Sbjct: 788 VPVYRRDPDQGVDSIAKSG-----GNHAVSGLKFRILREFLQLGYSVLLSDVDIVYLQNP 952

Query: 97  FVYI 100
           F YI
Sbjct: 953 FDYI 964


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.314    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,568,493
Number of Sequences: 36976
Number of extensions: 109049
Number of successful extensions: 441
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of query: 307
length of database: 9,014,727
effective HSP length: 96
effective length of query: 211
effective length of database: 5,465,031
effective search space: 1153121541
effective search space used: 1153121541
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)