TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0011a.2
         (391 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG585958 weakly similar to GP|22830897|dbj ORF-B {Oryza sativa (...    97  8e-21
TC90837 weakly similar to GP|22202752|dbj|BAC07409. hypothetical...    31  0.72
BF649857                                                               30  2.1
TC90624 similar to GP|6721160|gb|AAF26788.1| hypothetical protei...    29  3.6
TC86193 similar to GP|16974678|gb|AAL32439.1 SH3 domain-containi...    28  7.9
TC86195 similar to GP|16974678|gb|AAL32439.1 SH3 domain-containi...    28  7.9

>BG585958 weakly similar to GP|22830897|dbj ORF-B {Oryza sativa (japonica
           cultivar-group)}, partial (13%)
          Length = 769

 Score = 97.4 bits (241), Expect = 8e-21
 Identities = 47/71 (66%), Positives = 56/71 (78%)
 Frame = +2

Query: 1   SSNCRRQRSHIERNREEGHVRLWNDYFSTNPVYTEEQFQRRYRMRKHMFLRIVEAISNTD 60
           SS  R QR +IERNREEG+ RL+NDYFS  PVY +E F+RRYRM KH+FLRIVEA+   D
Sbjct: 458 SSRPRSQRRNIERNREEGYKRLFNDYFSEAPVYMDE*FRRRYRMHKHVFLRIVEALGQHD 637

Query: 61  DYFQMRNDATG 71
           +YFQ+  DATG
Sbjct: 638 EYFQLTVDATG 670


>TC90837 weakly similar to GP|22202752|dbj|BAC07409. hypothetical
           protein~similar to Oryza sativa chromosome10
           OSJNBa0079H13.17, partial (7%)
          Length = 596

 Score = 31.2 bits (69), Expect = 0.72
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
 Frame = +1

Query: 242 YYLADEIYPEWATFVKTISM-----------PQGEKRKLFAQHQEGARKDVERAFGVL*S 290
           YYL D+ YP+   ++                P    ++ F +     R  +ER+FGVL  
Sbjct: 10  YYLVDKGYPDKEGYMVPYPRIRYHQSQFEHEPPTNAQEAFNRAHSSLRSCIERSFGVLKK 189

Query: 291 RFAIVRGPARAWHLHILKDIIYACIILHNMI 321
           R+ I+    + + +    D+I A   LHN I
Sbjct: 190 RWKILNKMPQ-FSVKTQIDVIIAAFALHNYI 279


>BF649857 
          Length = 601

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 10/29 (34%), Positives = 16/29 (54%), Gaps = 2/29 (6%)
 Frame = -3

Query: 153 GSIDCMHWI--WENGPTAWKGQYCRGDHG 179
           G++ C HW   W+ G   + G +C  D+G
Sbjct: 194 GNVICYHWFVAWQRGHRMYLGNFCNMDYG 108


>TC90624 similar to GP|6721160|gb|AAF26788.1| hypothetical protein
           {Arabidopsis thaliana}, partial (7%)
          Length = 455

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 86  RMLAYGSSTDSVDEYVCIGE 105
           R L  GSSTD ++ +VCIGE
Sbjct: 392 RELGAGSSTDFIETFVCIGE 451


>TC86193 similar to GP|16974678|gb|AAL32439.1 SH3 domain-containing protein 2
            {Arabidopsis thaliana}, partial (97%)
          Length = 1311

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 12/36 (33%), Positives = 22/36 (60%)
 Frame = +1

Query: 230  QFTLNGTTYNMGYYLADEIYPEWATFVKTISMPQGE 265
            Q T NG+T +MGY+L + ++P  A     +++  G+
Sbjct: 991  QTTHNGSTDSMGYFLGEVLFPYSAVSEVELNLSVGD 1098


>TC86195 similar to GP|16974678|gb|AAL32439.1 SH3 domain-containing protein
           2 {Arabidopsis thaliana}, partial (58%)
          Length = 848

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 12/36 (33%), Positives = 22/36 (60%)
 Frame = +2

Query: 230 QFTLNGTTYNMGYYLADEIYPEWATFVKTISMPQGE 265
           Q T NG+T +MGY+L + ++P  A     +++  G+
Sbjct: 440 QTTHNGSTDSMGYFLGEVLFPYSAVSEVELNLSVGD 547


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.323    0.138    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,056,332
Number of Sequences: 36976
Number of extensions: 162871
Number of successful extensions: 803
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of query: 391
length of database: 9,014,727
effective HSP length: 98
effective length of query: 293
effective length of database: 5,391,079
effective search space: 1579586147
effective search space used: 1579586147
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)