BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0010.7
(564 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC78698 homologue to GP|3746903|gb|AAC64109.1| signal recognitio... 387 e-119
BE941879 homologue to GP|3746903|gb| signal recognition particle... 232 3e-61
TC81509 similar to GP|3746903|gb|AAC64109.1| signal recognition ... 140 2e-33
TC77632 homologue to GP|18086492|gb|AAL57699.1 AT4g30600/F17I23_... 123 2e-28
TC87333 similar to SP|P49972|SR52_LYCES Signal recognition parti... 122 3e-28
TC88278 homologue to SP|P49972|SR52_LYCES Signal recognition par... 97 2e-20
BG649019 similar to PIR|T52612|T52 SRP receptor homolog FtsY pre... 89 3e-18
CB893781 homologue to PIR|C64504|C645 hypothetical protein MJ163... 33 0.29
BG588967 similar to GP|7107246|gb| unknown {Cicer arietinum}, pa... 31 1.1
TC90262 similar to GP|18252241|gb|AAL61953.1 unknown protein {Ar... 31 1.1
TC92621 similar to GP|7107252|gb|AAF36340.1| unknown {Pennisetum... 31 1.5
AJ503675 similar to GP|21928168|gb| AT5g23040/MYJ24_3 {Arabidops... 31 1.5
TC93195 weakly similar to GP|10176990|dbj|BAB10222. gb|AAD55291.... 30 2.5
TC77571 homologue to GP|20804846|dbj|BAB92528. putative rust res... 30 3.2
TC82894 similar to GP|14719335|gb|AAK73153.1 putative ATP-depend... 30 3.2
BG646612 weakly similar to GP|9758140|dbj| disease resistance pr... 29 4.2
TC77572 similar to GP|9558523|dbj|BAB03441.1 ESTs AU078742(C1188... 29 4.2
TC92091 similar to PIR|T06010|T06010 hypothetical protein T25K17... 29 5.5
TC89754 similar to GP|21618273|gb|AAM67323.1 unknown {Arabidopsi... 29 5.5
BG584000 weakly similar to GP|4097950|gb|A plant IF-like protein... 28 7.2
>TC78698 homologue to GP|3746903|gb|AAC64109.1| signal recognition particle
54 kDa subunit precursor {Pisum sativum}, partial (45%)
Length = 1090
Score = 387 bits (994), Expect(2) = e-119
Identities = 211/262 (80%), Positives = 229/262 (86%), Gaps = 2/262 (0%)
Frame = +1
Query: 1 MEAVLASRHFSTPTHSSSHNRTVCSSSPSPNSLKLSSPWTNASISSRNSFTKEIWGWVQA 60
MEAVLASRH STP SH+RT SSS KL S S+S RNSF KEIWG+VQ+
Sbjct: 265 MEAVLASRHLSTPL---SHHRTTASSSS-----KLCS-----SLSYRNSFAKEIWGFVQS 405
Query: 61 KSVAVRRRRDM--PGVVRAEMFGQLTTGLEAAWNKLKGEEVLTKENIVEPMRDIRRALLE 118
KSV +RR DM P VVRAEMFGQLTTGLE+AWNKLKGEEVLTK+NIVEPMRDIRRALLE
Sbjct: 406 KSVTMRRM-DMIRPVVVRAEMFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLE 582
Query: 119 ADVSLPVVRRFVQSVSDQAVGVGVIRGVKPDQQLVKIVHEELVKLMGGEVSELAFAKSGT 178
ADVSLPVVRRFVQSV+DQAVGVGV RGVKPDQQLVKIVH+ELV+LMGGEVSEL FAK+G
Sbjct: 583 ADVSLPVVRRFVQSVTDQAVGVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGP 762
Query: 179 TVILLAGLQGVGKTTVCAKLSNYLKKQGKSCMLVAGDIYRPAAIDQLTILGKQVGVPVYT 238
TVILLAGLQGVGKTTVCAKL+NY KKQGKSCMLVAGD+YRPAAIDQLTILGKQV VPVYT
Sbjct: 763 TVILLAGLQGVGKTTVCAKLANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYT 942
Query: 239 AGTDVKPSEIARQGLEEAKKKK 260
AGTDVKPS+IA+QG EEA+K++
Sbjct: 943 AGTDVKPSDIAKQGFEEAQKEE 1008
Score = 61.6 bits (148), Expect(2) = e-119
Identities = 30/35 (85%), Positives = 34/35 (96%)
Frame = +2
Query: 253 LEEAKKKKIDVVIVDTAGRLQIDKAMMDELKEVKK 287
L++ KKKKIDVVIVDTAGRLQIDKAMMDELK+VK+
Sbjct: 986 LKKRKKKKIDVVIVDTAGRLQIDKAMMDELKDVKR 1090
>BE941879 homologue to GP|3746903|gb| signal recognition particle 54 kDa
subunit precursor {Pisum sativum}, partial (23%)
Length = 385
Score = 232 bits (591), Expect = 3e-61
Identities = 118/126 (93%), Positives = 124/126 (97%)
Frame = +3
Query: 324 LTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDVLSFVEK 383
LTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM+DLEPFYPDRMAGRIL MGDVLSFVEK
Sbjct: 3 LTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILRMGDVLSFVEK 182
Query: 384 AQEVMQQEDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGMSKVTPAQIRE 443
AQEVMQQEDAE LQ+KIMSAKFDFNDFLKQTRAVAQMGSVSRV+GMIPGM+KVTPAQIRE
Sbjct: 183 AQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTPAQIRE 362
Query: 444 AEKNLK 449
AE+NL+
Sbjct: 363 AERNLE 380
>TC81509 similar to GP|3746903|gb|AAC64109.1| signal recognition particle 54
kDa subunit precursor {Pisum sativum}, partial (14%)
Length = 636
Score = 140 bits (352), Expect = 2e-33
Identities = 70/81 (86%), Positives = 74/81 (90%)
Frame = +2
Query: 484 GKTEQQVSQVVAQLFQMRVRMKNLMGVMQGGSMPTLSNLEEALKPEEKAPPGTARRRKRS 543
GKTEQQVSQ+VAQLFQMRVRMKNLMGVM+GGSMPTLSNLEEALK EEKAPPGTARRRK++
Sbjct: 2 GKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSMPTLSNLEEALKTEEKAPPGTARRRKKA 181
Query: 544 EQRSLFADSAARPTPRGFGSK 564
E R LFADS R PRGFGSK
Sbjct: 182 ESRRLFADSTLRQPPRGFGSK 244
>TC77632 homologue to GP|18086492|gb|AAL57699.1 AT4g30600/F17I23_60
{Arabidopsis thaliana}, partial (75%)
Length = 2273
Score = 123 bits (308), Expect = 2e-28
Identities = 77/288 (26%), Positives = 151/288 (51%), Gaps = 18/288 (6%)
Frame = +3
Query: 91 WNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGVGVIRGVKPDQ 150
+ + G+ L K ++ ++ ++ L+ +V+ + + +SV+ G + +
Sbjct: 1116 FQSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISS 1295
Query: 151 QLVKIVHEELVKLMGGEVS-------ELAFAKSGTTVILLAGLQGVGKTTVCAKLSNYLK 203
+ + + LV+++ S A + V++ G+ GVGK+T AK++ +L+
Sbjct: 1296 TVQAAMEDALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQ 1475
Query: 204 KQGKSCMLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAKKKKIDV 263
+ + M+ A D +R A++QL +++ +P++ G + P+ +A++ ++EA + DV
Sbjct: 1476 QHNVNVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEASRNGSDV 1655
Query: 264 VIVDTAGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEIG----- 318
V+VDTAGR+Q ++ +M L ++ NP VL V +A+ G +A ++ FN ++
Sbjct: 1656 VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTS 1835
Query: 319 -----ITGAILTKLDG-DSRGGAALSVKEVSGKPIKLVGRGERMDDLE 360
I G +LTK D D + GAALS+ +SG P+ VG G+ DL+
Sbjct: 1836 PTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLK 1979
>TC87333 similar to SP|P49972|SR52_LYCES Signal recognition particle 54 kDa
protein 2 (SRP54). [Tomato] {Lycopersicon esculentum},
partial (58%)
Length = 1236
Score = 122 bits (307), Expect = 3e-28
Identities = 74/262 (28%), Positives = 137/262 (52%), Gaps = 7/262 (2%)
Frame = +1
Query: 280 DELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSV 339
+E+++V ++ P V+ V+D+ GQ A F + + I+TK+DG ++GG ALS
Sbjct: 1 EEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALSA 180
Query: 340 KEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEKLQEK 399
+ P+ +G GE MD+ E F R+LG GD+ F+ K EV+ + +L K
Sbjct: 181 VAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGQGDLSGFMNKIHEVVPMDQQPELLNK 360
Query: 400 IMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGMSK--VTPAQIREAEKNLKNMEAMIEA 457
+ F +Q + + +MG +S V M+PG S + + ++++ +K M+++
Sbjct: 361 LQEGTFTLRIMYEQFQNILKMGPMSEVFSMLPGFSNELLPKGKDQDSQAKIKRYMTMMDS 540
Query: 458 MTPEERE--KPELLAESPVRRKRVAQESGKTEQQVSQVVAQ---LFQMRVRMKNLMGVMQ 512
MT EE + P+L+ ES R R+A+ SG+ ++V +++ + L ++ +MK L + +
Sbjct: 541 MTNEELDSSNPKLMNES--RMMRIARGSGRQVREVMEMMEEYKRLAKIWSKMKGLK-IPK 711
Query: 513 GGSMPTLSNLEEALKPEEKAPP 534
G M +++ A + PP
Sbjct: 712 KGDMNSMTRNMNATHMSKILPP 777
>TC88278 homologue to SP|P49972|SR52_LYCES Signal recognition particle 54
kDa protein 2 (SRP54). [Tomato] {Lycopersicon
esculentum}, partial (40%)
Length = 713
Score = 97.1 bits (240), Expect = 2e-20
Identities = 60/208 (28%), Positives = 107/208 (50%)
Frame = +3
Query: 74 VVRAEMFGQLTTGLEAAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSV 133
+V A++ G +T L+ ++ ++ ++ + E + +I RALL++DV +VR ++
Sbjct: 102 MVLADLGGSITRALK----QMSNATIIDEKVLNECLNEITRALLQSDVQFKLVRDMQTNI 269
Query: 134 SDQAVGVGVIRGVKPDQQLVKIVHEELVKLMGGEVSELAFAKSGTTVILLAGLQGVGKTT 193
+ G + + + V EL ++ K +V++ GLQG GKTT
Sbjct: 270 KKIVNLDDLAAGHNKRRIIQQAVFNELCNILDPGKPAFTPKKGKASVVMFVGLQGSGKTT 449
Query: 194 VCAKLSNYLKKQGKSCMLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGL 253
C K + Y +K+G LV D +R A DQL + +P Y + + P +IA +G+
Sbjct: 450 TCTKYAFYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGV 629
Query: 254 EEAKKKKIDVVIVDTAGRLQIDKAMMDE 281
E KK+ D++IVDT+GR + + A+ +E
Sbjct: 630 ERFKKENCDLIIVDTSGRHKQEAALFEE 713
>BG649019 similar to PIR|T52612|T52 SRP receptor homolog FtsY precursor
chloroplast [validated] - Arabidopsis thaliana, partial
(39%)
Length = 788
Score = 89.4 bits (220), Expect = 3e-18
Identities = 57/172 (33%), Positives = 84/172 (48%), Gaps = 32/172 (18%)
Frame = +1
Query: 210 MLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDV-KPSEIARQGLEEAKKKKIDVVIVDT 268
+L AGD +R AA DQL I ++ G + A ++ K S + Q ++ K+ D+V+ DT
Sbjct: 202 LLAAGDTFRAAASDQLEIWAERTGCEIVVAESEKSKASAVLSQAVKRGKELGYDIVLCDT 381
Query: 269 AGRLQIDKAMMDELKEVKKSLNPT-------------------------------EVLLV 297
+GRL + +M+EL KK++ E+LLV
Sbjct: 382 SGRLHTNYRLMEELISCKKAVAKVVAGAPNVSFVSFTLDILVLDTARAVAANFIMEILLV 561
Query: 298 VDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKL 349
+D TG FN +G+TG ILTKLDG +RGG +SV + G P+KL
Sbjct: 562 LDGTTGLNMLPQAREFNEVVGVTGLILTKLDGSARGGCVVSVVDELGIPVKL 717
>CB893781 homologue to PIR|C64504|C645 hypothetical protein MJ1637 -
Methanococcus jannaschii, partial (2%)
Length = 473
Score = 33.1 bits (74), Expect = 0.29
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +2
Query: 170 ELAFAKSGTTVILLAGLQGVGKTTVCAKLSNYLKKQGKSCMLVA 213
++ + G++ ++L GL+G+GKTT+ KL + GKS +L A
Sbjct: 161 KMELLRGGSSTLVLTGLRGLGKTTLATKLCWDEEVNGKS*ILFA 292
>BG588967 similar to GP|7107246|gb| unknown {Cicer arietinum}, partial (85%)
Length = 699
Score = 31.2 bits (69), Expect = 1.1
Identities = 31/115 (26%), Positives = 55/115 (46%), Gaps = 5/115 (4%)
Frame = +3
Query: 158 EELVKLMGGEVSELAFAKSGTTVILLAGLQGVGKTTVCAKLSNYLKK--QGKSCMLVAGD 215
+E+++L+ E SE T VI + G G+GKTT+ + N + + KS +L
Sbjct: 144 QEVIQLLNTEPSE------ETRVIGICGTGGIGKTTIAKAVYNKIHHHFEAKSFLLNVRQ 305
Query: 216 IYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQG---LEEAKKKKIDVVIVD 267
++ + L +Q+ +Y TD+K E G L+E +K +++VD
Sbjct: 306 VWEQD--NGEVSLQQQLLSDIYKT-TDIKKIETVESGKMILQEMLPQKRMLLVVD 461
>TC90262 similar to GP|18252241|gb|AAL61953.1 unknown protein {Arabidopsis
thaliana}, partial (47%)
Length = 1236
Score = 31.2 bits (69), Expect = 1.1
Identities = 20/58 (34%), Positives = 28/58 (47%), Gaps = 9/58 (15%)
Frame = -3
Query: 9 HFSTPTHSSSHNRTVCSSSPSPNSLKLSSPWTNASIS---------SRNSFTKEIWGW 57
+FS + +H +V S SPSP+S LSS + AS S S+ F WG+
Sbjct: 832 YFSLRLDTDTHRSSVSS*SPSPSSTSLSSSSSGASGSTPFICFSKRSKPRFAASFWGF 659
>TC92621 similar to GP|7107252|gb|AAF36340.1| unknown {Pennisetum glaucum},
partial (10%)
Length = 827
Score = 30.8 bits (68), Expect = 1.5
Identities = 20/72 (27%), Positives = 36/72 (49%), Gaps = 3/72 (4%)
Frame = +2
Query: 139 GVGVIRG---VKPDQQLVKIVHEELVKLMGGEVSELAFAKSGTTVILLAGLQGVGKTTVC 195
GV + +G V + + + +L+K ++ + G + +LL GL G+GKTT+
Sbjct: 413 GVSIFKGPFGVPENPEFTVGLDSQLIK------PKMELLRDGRSTLLLTGLGGMGKTTLA 574
Query: 196 AKLSNYLKKQGK 207
KL + +GK
Sbjct: 575 TKLCLDQQVKGK 610
>AJ503675 similar to GP|21928168|gb| AT5g23040/MYJ24_3 {Arabidopsis
thaliana}, partial (20%)
Length = 576
Score = 30.8 bits (68), Expect = 1.5
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 11 STPTHSSSHNRTVCSSSPSPNSL-KLSSPWTNASIS 45
S+ TH+ +H+R+ C S P PN LSSP + S++
Sbjct: 21 SSFTHTPNHHRSCCCSPPPPNCRPSLSSPLLSQSVT 128
>TC93195 weakly similar to GP|10176990|dbj|BAB10222.
gb|AAD55291.1~gene_id:MYH19.18~similar to unknown
protein {Arabidopsis thaliana}, partial (21%)
Length = 737
Score = 30.0 bits (66), Expect = 2.5
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +1
Query: 9 HFSTPTHSSSHNRTVCSSSPSPNSLKLSSP--WTNAS 43
HF TPT+++++N + P PN+ K ++P WT AS
Sbjct: 196 HFPTPTNNNNNNNVI----PEPNNNKNNNPRTWTVAS 294
>TC77571 homologue to GP|20804846|dbj|BAB92528. putative rust resistance
protein {Oryza sativa (japonica cultivar-group)},
partial (1%)
Length = 954
Score = 29.6 bits (65), Expect = 3.2
Identities = 15/40 (37%), Positives = 24/40 (59%)
Frame = +2
Query: 159 ELVKLMGGEVSELAFAKSGTTVILLAGLQGVGKTTVCAKL 198
+L+KL ++ + G + +LL GL G+GKTT+ KL
Sbjct: 626 QLIKL------KVEILREGRSTLLLTGLGGMGKTTLATKL 727
>TC82894 similar to GP|14719335|gb|AAK73153.1 putative ATP-dependent RNA
helicase {Oryza sativa}, partial (32%)
Length = 867
Score = 29.6 bits (65), Expect = 3.2
Identities = 23/66 (34%), Positives = 35/66 (52%), Gaps = 1/66 (1%)
Frame = -3
Query: 11 STPTHSSSHNRTVCSSSPSPNSLKLSSPWTNASISSRNSFTKEIW-GWVQAKSVAVRRRR 69
S P SSS N+ + + + NSL L+ WT +SFTK + G V+ K+ R +
Sbjct: 304 SLPRASSSINQCMTTRENNRNSLSLN*RWT----FKTHSFTKLVT*GLVKTKAREGTRSK 137
Query: 70 DMPGVV 75
++ GVV
Sbjct: 136 NIAGVV 119
>BG646612 weakly similar to GP|9758140|dbj| disease resistance protein-like
{Arabidopsis thaliana}, partial (7%)
Length = 735
Score = 29.3 bits (64), Expect = 4.2
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 170 ELAFAKSGTTVILLAGLQGVGKTTVCAKL 198
++ + G++ ++L GL G+GKTT+ KL
Sbjct: 467 KMELIRDGSSTLVLTGLGGLGKTTLATKL 553
>TC77572 similar to GP|9558523|dbj|BAB03441.1 ESTs AU078742(C11888)
C26225(C11888) correspond to a region of the predicted
gene.~Similar to Oryza, partial (5%)
Length = 2535
Score = 29.3 bits (64), Expect = 4.2
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 170 ELAFAKSGTTVILLAGLQGVGKTTVCAKL 198
++ + G++ ++L GL G+GKTT+ KL
Sbjct: 499 KMELLRGGSSTLVLTGLGGLGKTTLATKL 585
>TC92091 similar to PIR|T06010|T06010 hypothetical protein T25K17.70 -
Arabidopsis thaliana, partial (86%)
Length = 1120
Score = 28.9 bits (63), Expect = 5.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 9 HFSTPTHSSSHNRTVCSSSP 28
HF P HS HN +CSS P
Sbjct: 307 HFHPPLHSEVHNIPICSSLP 248
>TC89754 similar to GP|21618273|gb|AAM67323.1 unknown {Arabidopsis
thaliana}, partial (88%)
Length = 759
Score = 28.9 bits (63), Expect = 5.5
Identities = 15/39 (38%), Positives = 27/39 (68%)
Frame = +2
Query: 11 STPTHSSSHNRTVCSSSPSPNSLKLSSPWTNASISSRNS 49
S+P+ SS+H+ +V +S PSP+ SS +++S +S +S
Sbjct: 152 SSPSPSSAHHASVSNSHPSPSPPPTSSSPSSSSPTSWSS 268
>BG584000 weakly similar to GP|4097950|gb|A plant IF-like protein
{Arabidopsis thaliana}, partial (24%)
Length = 833
Score = 28.5 bits (62), Expect = 7.2
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = -2
Query: 257 KKKKIDVVIVDTAGRLQIDK----AMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTT 312
K+ +D ++ D + Q + ++ ELKE++ L E V + +T QEA
Sbjct: 466 KQASVDPLLKDLNDKKQSFRRNVVSLASELKELRSRLASQEQSYVKETLTRQEAETNAKV 287
Query: 313 FNLEIG 318
LEIG
Sbjct: 286 MELEIG 269
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.314 0.130 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,845,704
Number of Sequences: 36976
Number of extensions: 139177
Number of successful extensions: 973
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of query: 564
length of database: 9,014,727
effective HSP length: 101
effective length of query: 463
effective length of database: 5,280,151
effective search space: 2444709913
effective search space used: 2444709913
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0010.7