BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0008.9
(276 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI270515 similar to GP|3859570|gb|A unknown {Oryza sativa}, part... 100 1e-24
TC82584 weakly similar to GP|3859570|gb|AAC72848.1| unknown {Ory... 72 2e-13
TC92089 50 1e-06
AJ499625 47 1e-05
TC77517 similar to PIR|T51159|T51159 HMG protein [imported] - Ar... 32 0.35
TC76851 homologue to PIR|S40122|S40122 high mobility group prote... 31 0.45
TC83261 weakly similar to GP|9759159|dbj|BAB09715.1 gb|AAC64874.... 31 0.45
BI266011 similar to GP|9759246|dbj| sugar transporter-like prote... 30 0.77
TC77028 similar to GP|7406669|emb|CAB85628.1 putative ripening-r... 30 0.77
BF637890 similar to PIR|B84659|B846 probable receptor-like prote... 30 1.0
TC77456 similar to PIR|T10580|T10580 zinc-finger protein Lsd1 - ... 30 1.0
TC83362 30 1.0
TC76852 similar to PIR|T09581|T09581 probable high mobility grou... 30 1.3
BQ123028 similar to PIR|T09581|T09 probable high mobility group ... 30 1.3
TC91213 weakly similar to PIR|G71405|G71405 hypothetical protein... 30 1.3
BI312088 similar to PIR|T47865|T4786 transport protein subunit-l... 29 2.2
BG451315 weakly similar to PIR|D85065|D850 receptor protein kina... 29 2.2
TC77660 similar to GP|22212524|dbj|BAC07504. receptor-like prote... 29 2.2
CA919078 29 2.2
TC78124 similar to GP|21592711|gb|AAM64660.1 unknown {Arabidopsi... 28 2.9
>BI270515 similar to GP|3859570|gb|A unknown {Oryza sativa}, partial (45%)
Length = 564
Score = 100 bits (249), Expect(2) = 1e-24
Identities = 64/141 (45%), Positives = 81/141 (57%)
Frame = +2
Query: 76 VSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLTHLQVIDYLTLTNSMFIYF 135
V+VP SSL +VTVRCGHC +LLSVNM+ PF +ID
Sbjct: 92 VNVPYSSLLTIVTVRCGHCANLLSVNMVAPLLQPFPPPQLPQKQHIIDEE---------- 241
Query: 136 SCSKEDANMTFNSHSGASMMTYSDCEEEDLIPMSNFVNKPPEKRQRTPSAYNRFIKEEIK 195
+ SKE + + + AS + E IP +P EKR R PSAYNRFIKEEI+
Sbjct: 242 ASSKEIGSSSSKCNKIASF----EAVEHPRIPPI----RPIEKRHRVPSAYNRFIKEEIQ 397
Query: 196 RLKAENPDMAHKEAFSTAAKN 216
R+KA NPD++H+EAFS+AAKN
Sbjct: 398 RIKASNPDISHREAFSSAAKN 460
Score = 30.0 bits (66), Expect(2) = 1e-24
Identities = 10/15 (66%), Positives = 12/15 (79%)
Frame = +1
Query: 60 EQICYVQCGFCTTIL 74
E++CYV C FC TIL
Sbjct: 43 ERVCYVHCNFCNTIL 87
>TC82584 weakly similar to GP|3859570|gb|AAC72848.1| unknown {Oryza sativa},
partial (23%)
Length = 623
Score = 72.4 bits (176), Expect = 2e-13
Identities = 31/46 (67%), Positives = 36/46 (77%)
Frame = +3
Query: 60 EQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKA 105
EQ+CY+ C FC +L VSVPCSSL +VTVRCGHCT+L SVNM A
Sbjct: 396 EQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAA 533
>TC92089
Length = 696
Score = 49.7 bits (117), Expect = 1e-06
Identities = 22/56 (39%), Positives = 32/56 (56%)
Frame = +2
Query: 166 IPMSNFVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFP 221
+P + K +R S YN F+K E+ ++KAENP++ HK AF A+ W N P
Sbjct: 77 MPKAKTAKKATGGGKRKLSPYNAFMKSELPKVKAENPNLEHKAAFKLVAERWKNSP 244
>AJ499625
Length = 437
Score = 46.6 bits (109), Expect = 1e-05
Identities = 22/48 (45%), Positives = 32/48 (65%), Gaps = 7/48 (14%)
Frame = +3
Query: 177 EKRQRTPSA-------YNRFIKEEIKRLKAENPDMAHKEAFSTAAKNW 217
++RQ+ SA YN+F+K EI ++KAENP++ HKEAF A+ W
Sbjct: 132 KRRQQKKSATAKKLTPYNKFMKTEIIKVKAENPNLQHKEAFKMVAQRW 275
>TC77517 similar to PIR|T51159|T51159 HMG protein [imported] - Arabidopsis
thaliana, partial (70%)
Length = 907
Score = 31.6 bits (70), Expect = 0.35
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 174 KPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTA 213
K P K +R PSA+ F+++ K KAENP++ A A
Sbjct: 258 KDPNKPKRPPSAFFVFLEDFRKTFKAENPNVKAVSAVGKA 377
>TC76851 homologue to PIR|S40122|S40122 high mobility group protein HMG-1 -
garden pea, partial (92%)
Length = 863
Score = 31.2 bits (69), Expect = 0.45
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 174 KPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAA 214
K P K +R PSA+ F+++ K+ K +NPD A AA
Sbjct: 215 KDPNKPKRPPSAFFVFMEDFRKQFKKDNPDNKAVSAVGKAA 337
>TC83261 weakly similar to GP|9759159|dbj|BAB09715.1
gb|AAC64874.1~gene_id:MEE6.20~strong similarity to
unknown protein {Arabidopsis thaliana}, partial (26%)
Length = 1000
Score = 31.2 bits (69), Expect = 0.45
Identities = 21/63 (33%), Positives = 31/63 (48%)
Frame = -3
Query: 136 SCSKEDANMTFNSHSGASMMTYSDCEEEDLIPMSNFVNKPPEKRQRTPSAYNRFIKEEIK 195
S S + T + + A+++T SDC ++ + S F+ P R P YNR E K
Sbjct: 269 SSSPTEPKGTILAPNLAAILTNSDCSGQNNLYSSPFL*NP----SRNPPGYNRTCDLEAK 102
Query: 196 RLK 198
RLK
Sbjct: 101 RLK 93
>BI266011 similar to GP|9759246|dbj| sugar transporter-like protein
{Arabidopsis thaliana}, partial (15%)
Length = 533
Score = 30.4 bits (67), Expect = 0.77
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +3
Query: 8 SSTINASFSLCQSKVLHHLSITSFSSSFTHTYSHPHIQKDTMSTLNHLFDLPEQICY 64
SST SF L LHH + + +SF++++ +P I + ST NHL P ++ Y
Sbjct: 12 SSTALFSFKLSLFNSLHHQRVKNSKASFSNSHINPRI--ISSSTNNHL--SPTRVTY 170
>TC77028 similar to GP|7406669|emb|CAB85628.1 putative ripening-related
protein {Vitis vinifera}, partial (94%)
Length = 1309
Score = 30.4 bits (67), Expect = 0.77
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 93 HCTSLLSVNMMKASFVPFHLLASLTHLQVIDYL 125
HCT L+++ F+PF L+ SL H V +L
Sbjct: 20 HCTKLIAI*TFLCFFIPFSLILSLLHSFVSGFL 118
>BF637890 similar to PIR|B84659|B846 probable receptor-like protein kinase
ERECTA [imported] - Arabidopsis thaliana, partial (8%)
Length = 664
Score = 30.0 bits (66), Expect = 1.0
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = -2
Query: 5 ECPSSTINASFSLCQSKVLHHLSITSFSSSFTHTYSHPHIQKDTMSTLNHLFDLPEQ 61
E +S S+CQS +LH S SSF H H + T+S + + LPEQ
Sbjct: 453 ETTNSXTAGISSICQSSMLHG*VCKSQDSSFGQLSFHEHFRCSTLSQVWRSY-LPEQ 286
>TC77456 similar to PIR|T10580|T10580 zinc-finger protein Lsd1 - Arabidopsis
thaliana, partial (90%)
Length = 1472
Score = 30.0 bits (66), Expect = 1.0
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
Frame = +2
Query: 18 CQSKVLHHLSITSFSSSFTHTYSHPHIQKDTMSTLNHLFDLPEQICYVQCGFCTTILMVS 77
C++ +++ TS S HT + L + Q+ +V CG C T LM
Sbjct: 443 CRTLLMYTRGATSVRCSCCHTVN--------------LAPVSNQVAHVPCGNCRTTLMYP 580
Query: 78 VPCSSLSMVVTVRCGHCTSLLSVNMMKASF-VPFH 111
S V+C C + ++NM +P H
Sbjct: 581 YGAPS------VKCAVCHYITNINMSNGRLPIPGH 667
>TC83362
Length = 252
Score = 30.0 bits (66), Expect = 1.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 55 LFDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVR 90
L+ P V GFC+ L++ PCSSL + +R
Sbjct: 144 LYSFPSSALIV*RGFCSFSLLLITPCSSLIKITRIR 37
>TC76852 similar to PIR|T09581|T09581 probable high mobility group protein
HMG1 - sword bean, partial (93%)
Length = 731
Score = 29.6 bits (65), Expect = 1.3
Identities = 14/29 (48%), Positives = 18/29 (61%)
Frame = +2
Query: 174 KPPEKRQRTPSAYNRFIKEEIKRLKAENP 202
K P K +R PSA+ F+ E +R K ENP
Sbjct: 161 KDPNKPKRPPSAFFVFMSEFRERFKKENP 247
>BQ123028 similar to PIR|T09581|T09 probable high mobility group protein HMG1
- sword bean, partial (73%)
Length = 657
Score = 29.6 bits (65), Expect = 1.3
Identities = 14/29 (48%), Positives = 18/29 (61%)
Frame = +1
Query: 174 KPPEKRQRTPSAYNRFIKEEIKRLKAENP 202
K P K +R PSA+ F+ E +R K ENP
Sbjct: 112 KDPNKPKRPPSAFFVFMSEFRERFKKENP 198
>TC91213 weakly similar to PIR|G71405|G71405 hypothetical protein -
Arabidopsis thaliana, partial (24%)
Length = 836
Score = 29.6 bits (65), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (55%)
Frame = +1
Query: 17 LCQSKVLHHLSITSFSSSFTHTYSHPHIQKDTMSTLN 53
L SK H S+TSF SS+ + S+ H Q + + +N
Sbjct: 91 LITSKTKTHRSLTSFKSSYAASPSYYHFQHKSFAAIN 201
>BI312088 similar to PIR|T47865|T4786 transport protein subunit-like -
Arabidopsis thaliana, partial (80%)
Length = 663
Score = 28.9 bits (63), Expect = 2.2
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -1
Query: 94 CTSLLSVNMMKASFVPFHLLASLTHLQVIDYLTLTNSMFIYFSCSKEDANMTFNSHS 150
C + +++ + S VP HLLASL L + F +F + TF S S
Sbjct: 567 CWNYINITWSQPSPVPLHLLASLFFLFIFLVPNSARGFFFFFFNRNVSSYTTFTSTS 397
>BG451315 weakly similar to PIR|D85065|D850 receptor protein kinase-like
protein [imported] - Arabidopsis thaliana, partial (7%)
Length = 653
Score = 28.9 bits (63), Expect = 2.2
Identities = 16/68 (23%), Positives = 33/68 (48%)
Frame = +2
Query: 5 ECPSSTINASFSLCQSKVLHHLSITSFSSSFTHTYSHPHIQKDTMSTLNHLFDLPEQICY 64
+C +ST + + +S + LS+ S + + Y+H I ++T+ + L+D +
Sbjct: 65 DCHNSTEQSLTATYKSNLNKVLSLLSSDAIVSKGYNHTSIGENTIDAVYGLYDCRGDVTG 244
Query: 65 VQCGFCTT 72
C FC +
Sbjct: 245 SFCQFCVS 268
>TC77660 similar to GP|22212524|dbj|BAC07504. receptor-like protein kinase
{Nicotiana tabacum}, partial (69%)
Length = 1886
Score = 28.9 bits (63), Expect = 2.2
Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 1/132 (0%)
Frame = -2
Query: 6 CPSSTINASFSLCQSKVLHHLSITSFSSSFTHTYSHPHIQKDTMSTLNHLFDL-PEQICY 64
C + N SF K + L I S ++T T + + K + +T +L P Q+C+
Sbjct: 1564 CKTKIRNPSFHFIIKKNVCRLEI---SMNYTRTMACMKVFKTSRNTKCNLMPCQPIQLCF 1394
Query: 65 VQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLTHLQVIDY 124
F IL S+ + ++T+R + + M +L +L+HL
Sbjct: 1393 TSFNFVQHILQTSILHELVHKIMTIRSRNMSQQRQKVTMTNLTDCVNLRLNLSHL----- 1229
Query: 125 LTLTNSMFIYFS 136
L + I+FS
Sbjct: 1228 --LMQKLTIFFS 1199
>CA919078
Length = 515
Score = 28.9 bits (63), Expect = 2.2
Identities = 16/36 (44%), Positives = 18/36 (49%), Gaps = 1/36 (2%)
Frame = +3
Query: 22 VLHHLSITSFSS-SFTHTYSHPHIQKDTMSTLNHLF 56
+LHH S F S H Y H HIQK +S N F
Sbjct: 105 LLHHPSTIMFDSFPHHHQYPHQHIQKKPLSLNNLAF 212
>TC78124 similar to GP|21592711|gb|AAM64660.1 unknown {Arabidopsis
thaliana}, partial (86%)
Length = 559
Score = 28.5 bits (62), Expect = 2.9
Identities = 26/83 (31%), Positives = 36/83 (43%)
Frame = +2
Query: 190 IKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPTQCKGDEEGVLHPCITSMCGTFRSMKK 249
+KEEIKRL D ++K F T F QC E ++ GT R+ KK
Sbjct: 77 LKEEIKRLGKLQSDGSYKVTFGTL------FHDDQCANIFE--------ALVGTLRAAKK 214
Query: 250 DKVSEEERSQGTLSWKGHRLSEG 272
KV L+++G L +G
Sbjct: 215 RKV---------LTYEGELLLQG 256
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.319 0.129 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,760,398
Number of Sequences: 36976
Number of extensions: 175887
Number of successful extensions: 1263
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of query: 276
length of database: 9,014,727
effective HSP length: 95
effective length of query: 181
effective length of database: 5,502,007
effective search space: 995863267
effective search space used: 995863267
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0008.9