BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0008.6
(262 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC89612 similar to GP|6934300|gb|AAF31706.1| unknown {Euphorbia ... 40 0.001
TC77488 similar to GP|15912313|gb|AAL08290.1 AT5g24690/MXC17_8 {... 37 0.008
BQ143960 weakly similar to SP|P21997|SSGP_ Sulfated surface glyc... 37 0.010
TC76707 similar to SP|Q07202|CORA_MEDSA Cold and drought-regulat... 35 0.017
TC77868 similar to GP|11994207|dbj|BAB01310. gene_id:MPN9.20~unk... 35 0.022
TC77742 weakly similar to GP|20268752|gb|AAM14079.1 unknown prot... 35 0.029
TC76704 homologue to SP|Q09134|GRPA_MEDFA Abscisic acid and envi... 34 0.050
BQ752048 weakly similar to GP|7303636|gb|A CG13214-PA {Drosophil... 34 0.050
BQ141736 similar to PIR|T06291|T062 extensin homolog T9E8.80 - A... 33 0.085
BQ137250 33 0.11
TC76705 similar to SP|Q07202|CORA_MEDSA Cold and drought-regulat... 33 0.11
TC77743 similar to GP|20268752|gb|AAM14079.1 unknown protein {Ar... 33 0.11
BM814145 homologue to GP|21322711|em pherophorin-dz1 protein {Vo... 33 0.11
BQ751144 weakly similar to PIR|PQ0479|PQ04 pistil extensin-like ... 33 0.15
TC76706 similar to SP|Q07202|CORA_MEDSA Cold and drought-regulat... 33 0.15
TC80058 similar to GP|15451066|gb|AAK96804.1 Unknown protein {Ar... 33 0.15
TC79678 homologue to GP|2674201|gb|AAC61786.1| glycine-rich RNA-... 32 0.19
TC86198 similar to GP|21536867|gb|AAM61199.1 putative long-chain... 32 0.19
BG447806 similar to PIR|T10798|T107 pherophorin-S - Volvox carte... 32 0.25
TC92318 similar to PIR|B85356|B85356 glycine-rich protein [impor... 31 0.42
>TC89612 similar to GP|6934300|gb|AAF31706.1| unknown {Euphorbia esula},
complete
Length = 1504
Score = 39.7 bits (91), Expect = 0.001
Identities = 18/46 (39%), Positives = 29/46 (62%)
Frame = +3
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSGALIRLRVIVRD 241
GG+ DGG+N G G+GD G GG+E+D D + G L+ ++++
Sbjct: 300 GGNDDDGGDNFNGGGNGDDG-GGEEEDGD--EEFGPLLNFEAVMKE 428
>TC77488 similar to GP|15912313|gb|AAL08290.1 AT5g24690/MXC17_8 {Arabidopsis
thaliana}, partial (79%)
Length = 2036
Score = 37.0 bits (84), Expect = 0.008
Identities = 21/49 (42%), Positives = 28/49 (56%), Gaps = 3/49 (6%)
Frame = +1
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDE-DDSDNG--SDSGALIRLRVIVRD 241
GGD G + GGG G D GD D DD D+G D G L R R+++++
Sbjct: 550 GGDIGKIISYGGGDGGDDNGDDDDYFDDFDDGDEGDEGGLFRRRILLQE 696
>BQ143960 weakly similar to SP|P21997|SSGP_ Sulfated surface glycoprotein 185
(SSG 185). {Volvox carteri}, partial (13%)
Length = 1023
Score = 36.6 bits (83), Expect = 0.010
Identities = 14/26 (53%), Positives = 17/26 (64%)
Frame = -3
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDED 221
GG+ G GG GGG G G +G GDE+
Sbjct: 82 GGNEGGGGGGGGGGGEGGRGGRGDEE 5
>TC76707 similar to SP|Q07202|CORA_MEDSA Cold and drought-regulated protein
CORA. [Alfalfa] {Medicago sativa}, partial (87%)
Length = 780
Score = 35.4 bits (80), Expect = 0.022
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = -1
Query: 130 ITINTTFIAASTAIVVVATTNLRRFLFHGLGVVTEATAVVTNMMLTVVAATKVMTKVVVA 189
+ + TT + +ST +V +T VVT T VVT + V V+T ++
Sbjct: 339 VVVTTTIVTSSTMVVATSTV-----------VVTTTTMVVTTSTVVVTTTAVVITSTIIT 193
Query: 190 PTMVVV 195
T VVV
Sbjct: 192 TTTVVV 175
Score = 33.9 bits (76), Expect = 0.065
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = -1
Query: 129 TITINTTFIAASTAIVVVATTNLRRFLFHGLGVVTEATAVVTNMMLTVVAATKVMTKVVV 188
TI ++T + A++ +VV TT VVT +T VVT + + + T VVV
Sbjct: 324 TIVTSSTMVVATSTVVVTTTTM----------VVTTSTVVVTTTAVVITSTIITTTTVVV 175
Query: 189 APTMVVVGG 197
T+ + G
Sbjct: 174 TSTIASIFG 148
Score = 30.8 bits (68), Expect(2) = 0.017
Identities = 24/67 (35%), Positives = 31/67 (45%), Gaps = 1/67 (1%)
Frame = +2
Query: 129 TITINTTFIAASTAIVVVATTNLRRFLFHGLGVVTEATAVVTNMMLTVVAAT-KVMTKVV 187
T+ + TT + T V VATT +V E T VV VV T +V+T +
Sbjct: 239 TVEVVTTMVVVVTTTVEVATT-----------MVEEVTMVVVTTTAEVVTTTVEVVTTMA 385
Query: 188 VAPTMVV 194
A TMVV
Sbjct: 386 EADTMVV 406
Score = 30.8 bits (68), Expect(2) = 0.13
Identities = 22/76 (28%), Positives = 35/76 (45%)
Frame = -1
Query: 120 HHHRPPPPVTITINTTFIAASTAIVVVATTNLRRFLFHGLGVVTEATAVVTNMMLTVVAA 179
H +R +T ++T + S+ V +TT + VVT +T VVT + V
Sbjct: 489 HGNRFSSTMTTVTSSTIVTTSSVTSVASTTIVSASAM----VVTTSTVVVTTSAVVVTTT 322
Query: 180 TKVMTKVVVAPTMVVV 195
+ +VVA + VVV
Sbjct: 321 IVTSSTMVVATSTVVV 274
Score = 30.4 bits (67), Expect = 0.72
Identities = 21/68 (30%), Positives = 31/68 (44%)
Frame = -1
Query: 128 VTITINTTFIAASTAIVVVATTNLRRFLFHGLGVVTEATAVVTNMMLTVVAATKVMTKVV 187
VT +TT ++AS +V +T VVT + VVT ++T + VV
Sbjct: 423 VTSVASTTIVSASAMVVTTSTV-----------VVTTSAVVVTTTIVTSSTMVVATSTVV 277
Query: 188 VAPTMVVV 195
V T +VV
Sbjct: 276 VTTTTMVV 253
Score = 29.6 bits (65), Expect = 1.2
Identities = 16/35 (45%), Positives = 20/35 (56%)
Frame = +2
Query: 161 VVTEATAVVTNMMLTVVAATKVMTKVVVAPTMVVV 195
VVT VVT M++ V +V T +V TMVVV
Sbjct: 227 VVTTTVEVVTTMVVVVTTTVEVATTMVEEVTMVVV 331
Score = 28.5 bits (62), Expect = 2.7
Identities = 15/38 (39%), Positives = 19/38 (49%), Gaps = 3/38 (7%)
Frame = +1
Query: 196 GGDSGDGGNNGGGSGHGDKG---DGGDEDDSDNGSDSG 230
G + G GG NGGG HG G GG + G ++G
Sbjct: 172 GYNHGGGGYNGGGYNHGGGGYNNGGGGYNHGGGGYNNG 285
Score = 28.1 bits (61), Expect = 3.6
Identities = 15/38 (39%), Positives = 18/38 (46%), Gaps = 3/38 (7%)
Frame = +1
Query: 196 GGDSGDGGNNGGGSGHGDKG---DGGDEDDSDNGSDSG 230
G + G GG NGGG HG G GG + G + G
Sbjct: 292 GYNHGGGGYNGGGYNHGGGGYNHGGGGYNHGGGGYNGG 405
Score = 27.3 bits (59), Expect = 6.1
Identities = 15/53 (28%), Positives = 25/53 (46%)
Frame = -1
Query: 135 TFIAASTAIVVVATTNLRRFLFHGLGVVTEATAVVTNMMLTVVAATKVMTKVV 187
+F+ + V TT+ + VVT +T VVT + V +T V+T +
Sbjct: 687 SFVLSLLGTVTTVTTSTMSPVSTSTVVVTTSTVVVTTSSMVVTTSTMVVTTTI 529
Score = 26.2 bits (56), Expect(2) = 2.0
Identities = 13/29 (44%), Positives = 15/29 (50%)
Frame = +1
Query: 197 GDSGDGGNNGGGSGHGDKGDGGDEDDSDN 225
G G GG+ GG GHG G ED + N
Sbjct: 613 GGGGHGGHGGG--GHGGHGAEQTEDKTQN 693
Score = 23.9 bits (50), Expect(2) = 0.017
Identities = 11/23 (47%), Positives = 12/23 (51%), Gaps = 4/23 (17%)
Frame = +1
Query: 197 GDSGDGGNNG----GGSGHGDKG 215
G G GG+ G GG GHG G
Sbjct: 400 GGGGHGGHGGGGYNGGGGHGGHG 468
Score = 21.2 bits (43), Expect(2) = 2.0
Identities = 12/31 (38%), Positives = 14/31 (44%)
Frame = +2
Query: 161 VVTEATAVVTNMMLTVVAATKVMTKVVVAPT 191
VVT VVT M V +V+T V T
Sbjct: 536 VVTTMVEVVTTMEEVVTTTVEVVTTTVEVDT 628
Score = 20.8 bits (42), Expect(2) = 0.13
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -3
Query: 105 NLKRTPKVHYHPIGHHHHR 123
+L P+VH H +H HR
Sbjct: 646 HLHHVPRVHLHRGCNHLHR 590
>TC77868 similar to GP|11994207|dbj|BAB01310. gene_id:MPN9.20~unknown
protein {Arabidopsis thaliana}, partial (36%)
Length = 1019
Score = 35.4 bits (80), Expect = 0.022
Identities = 22/54 (40%), Positives = 29/54 (52%), Gaps = 1/54 (1%)
Frame = +2
Query: 156 FHGLGVVTEATAVVTN-MMLTVVAATKVMTKVVVAPTMVVVGGDSGDGGNNGGG 208
FHGL +T A V N +++ ++ T V VV VVG +S GG NGGG
Sbjct: 746 FHGLNCITLALFVDMNCLLMMLIMRTGVGMITVVMGLRSVVGCNSTGGGGNGGG 907
>TC77742 weakly similar to GP|20268752|gb|AAM14079.1 unknown protein
{Arabidopsis thaliana}, partial (16%)
Length = 548
Score = 35.0 bits (79), Expect = 0.029
Identities = 17/38 (44%), Positives = 19/38 (49%)
Frame = +3
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSGALI 233
GGD DG NN G GHG GDG D G + L+
Sbjct: 264 GGD--DGKNNDGHGGHGGHGDGESNDGKSGGLNEALLL 371
>TC76704 homologue to SP|Q09134|GRPA_MEDFA Abscisic acid and environmental
stress inducible protein. [Sickle medic] {Medicago
falcata}, partial (81%)
Length = 771
Score = 34.3 bits (77), Expect = 0.050
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = -3
Query: 129 TITINTTFIAASTAIVVVATTNLRRFLFHGLGVVTEATAVVTNMML----TVVAATKVMT 184
T+ + TT + AST +V + VV+ T VVT+ ++ TVV + ++T
Sbjct: 409 TMVVATTIVTASTMVVATTVVTTSTMVVSTTIVVSTTTVVVTSTIVVSTPTVVVTSSIVT 230
Query: 185 KVVVAPTMVV 194
VV + +V
Sbjct: 229 TTVVVTSTIV 200
Score = 29.3 bits (64), Expect = 1.6
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 196 GGDSGDGGNNGGGSGHGDKG-DGGDEDDSDNGSDSG 230
G + G GG NGGG HG G +GG + G + G
Sbjct: 323 GYNHGGGGYNGGGYNHGGGGYNGGGYNHGGGGYNHG 430
Score = 28.5 bits (62), Expect = 2.7
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = +2
Query: 185 KVVVAPTMVVVGGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSG 230
K VV T V G GG NGGG HG +GG + G ++G
Sbjct: 146 KEVVEKTNEVNDAKYG-GGYNGGGYNHGGGYNGGGYNHGGGGYNNG 280
Score = 28.1 bits (61), Expect = 3.6
Identities = 14/32 (43%), Positives = 17/32 (52%), Gaps = 1/32 (3%)
Frame = +2
Query: 200 GDGGNNGGGSGHGDKG-DGGDEDDSDNGSDSG 230
G G NNGGG HG G +GG + G + G
Sbjct: 299 GGGYNNGGGYNHGGGGYNGGGYNHGGGGYNGG 394
Score = 27.7 bits (60), Expect = 4.7
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 200 GDGGNNGGGSGHGDKG--DGGDEDDSDNGSDSG 230
G G NNGGG HG G +GG + G + G
Sbjct: 260 GGGYNNGGGYNHGGGGYNNGGGYNHGGGGYNGG 358
>BQ752048 weakly similar to GP|7303636|gb|A CG13214-PA {Drosophila
melanogaster}, partial (6%)
Length = 657
Score = 34.3 bits (77), Expect = 0.050
Identities = 15/32 (46%), Positives = 18/32 (55%)
Frame = -3
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGS 227
G G GG GGG GHG G G + +D+ GS
Sbjct: 562 GWGRGRGGGRGGGRGHGGGGGGNNANDAPLGS 467
>BQ141736 similar to PIR|T06291|T062 extensin homolog T9E8.80 - Arabidopsis
thaliana, partial (4%)
Length = 1099
Score = 33.5 bits (75), Expect = 0.085
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSD 228
GG G+GG GG G GD+ G ++D+ +D
Sbjct: 388 GGRGGNGGRKGGSDGGGDENGGAEKDNRRRPAD 486
>BQ137250
Length = 1040
Score = 33.1 bits (74), Expect = 0.11
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 110 PKVHYHPIGHHHHRPPPPVTITINTTFIAA 139
P H P+ HH H PPPP+ +T I +
Sbjct: 295 PGTHLTPLSHHPHSPPPPLVSIFLSTLITS 206
>TC76705 similar to SP|Q07202|CORA_MEDSA Cold and drought-regulated protein
CORA. [Alfalfa] {Medicago sativa}, partial (80%)
Length = 854
Score = 33.1 bits (74), Expect = 0.11
Identities = 24/67 (35%), Positives = 31/67 (45%)
Frame = -2
Query: 128 VTITINTTFIAASTAIVVVATTNLRRFLFHGLGVVTEATAVVTNMMLTVVAATKVMTKVV 187
VT +TT + ST +V +T VV T VVT TVV + ++T V
Sbjct: 358 VTSVASTTIVTTSTVVVTTST------------VVVTTTVVVTT---TVVITSTIVTTTV 224
Query: 188 VAPTMVV 194
V TMVV
Sbjct: 223 VITTMVV 203
>TC77743 similar to GP|20268752|gb|AAM14079.1 unknown protein {Arabidopsis
thaliana}, partial (72%)
Length = 1426
Score = 33.1 bits (74), Expect = 0.11
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 201 DGGNNGGGSGHGDKGDGGDEDDSDNGSDSGALI 233
DG NN G GHG GDG D G + L+
Sbjct: 193 DGKNNDGHGGHGGHGDGESNDGKSGGLNEALLL 291
Score = 27.7 bits (60), Expect = 4.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 194 VVGGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSGALIRL 235
+ G D + +GG GHGD G+ +D +G + AL+ L
Sbjct: 181 LAGDDGKNNDGHGGHGGHGD----GESNDGKSGGLNEALLLL 294
>BM814145 homologue to GP|21322711|em pherophorin-dz1 protein {Volvox carteri
f. nagariensis}, partial (3%)
Length = 111
Score = 33.1 bits (74), Expect = 0.11
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = +2
Query: 195 VGGDSGDGGNNGGGSGHGDKGDGG 218
VGG G GG GGG G G G GG
Sbjct: 20 VGGGGGGGGGGGGGGGGGGGGGGG 91
>BQ751144 weakly similar to PIR|PQ0479|PQ04 pistil extensin-like protein
(clone pMG14) - common tobacco (fragment), partial (11%)
Length = 632
Score = 32.7 bits (73), Expect = 0.15
Identities = 18/43 (41%), Positives = 22/43 (50%), Gaps = 2/43 (4%)
Frame = -1
Query: 196 GGDSGDGGNNGGGSGH--GDKGDGGDEDDSDNGSDSGALIRLR 236
GG G+ GGG G GD GD+ DNG+ GA+ LR
Sbjct: 356 GGGRDRDGDGGGGENRELGRVGDDGDDAGGDNGAAGGAVGDLR 228
Score = 29.3 bits (64), Expect = 1.6
Identities = 15/35 (42%), Positives = 18/35 (50%), Gaps = 5/35 (14%)
Frame = -1
Query: 197 GDSGDGGNNGGGSGHGDKGD-----GGDEDDSDNG 226
G +GDG G SG G +GD GG + D D G
Sbjct: 428 GGNGDGSVASGRSGSGSRGDGVDGGGGRDRDGDGG 324
Score = 27.7 bits (60), Expect = 4.7
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Frame = -1
Query: 196 GGDSG----DGGNNGGGSGHGDKGDG-GDEDDSDNGSDSGAL 232
GGD+G DGG G GD+G G D +S G D L
Sbjct: 581 GGDAGRDGLDGGARADGGRLGDQGGGLADGGNSSTGGDRDGL 456
Score = 26.9 bits (58), Expect = 8.0
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Frame = -1
Query: 196 GGDSGDGG----NNGGGSGHGDKGDGGDEDDSDNGSDSG 230
GG DGG GG + G+ GGD D D G G
Sbjct: 551 GGARADGGRLGDQGGGLADGGNSSTGGDRDGLDAGLGGG 435
>TC76706 similar to SP|Q07202|CORA_MEDSA Cold and drought-regulated protein
CORA. [Alfalfa] {Medicago sativa}, partial (94%)
Length = 1034
Score = 32.7 bits (73), Expect = 0.15
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -3
Query: 135 TFIAASTAIVVVATTNLRRFLFHGLGVVTEATAVVTNMMLTVVAATKVMTKVVVAPTMVV 194
+F+ + V TT+ + VVT +T VVT + V +T V+T +V T +
Sbjct: 657 SFVLSLLGTVTTVTTSTVSSVSTSTVVVTTSTVVVTTSSMVVTTSTMVVTSTMVVTTTTI 478
Query: 195 VG 196
G
Sbjct: 477 FG 472
Score = 31.6 bits (70), Expect = 0.32
Identities = 25/82 (30%), Positives = 37/82 (44%), Gaps = 7/82 (8%)
Frame = -3
Query: 120 HHHRPPPPVTITINTTFIAASTAIVVVATTNL---RRFLFHGLGVVTEATAVVTN----M 172
H +R VT ++T + T+ +V T + VVT +T VVT +
Sbjct: 438 HGNRFSSTVTTMTSSTIVTTMTSSTIVTTVTSVASTTIVTTSTMVVTTSTVVVTTTTVVV 259
Query: 173 MLTVVAATKVMTKVVVAPTMVV 194
TVV + ++T VV TMVV
Sbjct: 258 TTTVVITSTIVTTTVVITTMVV 193
Score = 27.7 bits (60), Expect = 4.7
Identities = 24/67 (35%), Positives = 31/67 (45%)
Frame = +2
Query: 128 VTITINTTFIAASTAIVVVATTNLRRFLFHGLGVVTEATAVVTNMMLTVVAATKVMTKVV 187
VT+ T + +T +VVV TT + VVT VVT VV AT+V +
Sbjct: 224 VTMVEVITTVVVTTTVVVVTTT---------VEVVTTMVEVVT----MVVEATEVTVVTM 364
Query: 188 VAPTMVV 194
V MVV
Sbjct: 365 VEEVMVV 385
>TC80058 similar to GP|15451066|gb|AAK96804.1 Unknown protein {Arabidopsis
thaliana}, partial (11%)
Length = 499
Score = 32.7 bits (73), Expect = 0.15
Identities = 14/36 (38%), Positives = 19/36 (51%)
Frame = +1
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSGA 231
GG G GG + G +GD+ GG D + DSG+
Sbjct: 16 GGSGGGGGGHYGPDRNGDRSSGGRSRDGGSRGDSGS 123
>TC79678 homologue to GP|2674201|gb|AAC61786.1| glycine-rich RNA-binding
protein {Euphorbia esula}, partial (21%)
Length = 355
Score = 32.3 bits (72), Expect = 0.19
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = +3
Query: 196 GGDSGDGGNNGGGSGHG-DKG---DGGDEDDSDNGSDSGA 231
GG G GG GGG G G D+G DGG G D G+
Sbjct: 18 GGGGGYGGGGGGGYGGGRDRGYGDDGGSRYSRGGGGDGGS 137
>TC86198 similar to GP|21536867|gb|AAM61199.1 putative long-chain acyl-CoA
synthetase {Arabidopsis thaliana}, partial (58%)
Length = 1654
Score = 32.3 bits (72), Expect = 0.19
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 5/108 (4%)
Frame = +1
Query: 38 LRIRTNPIRQSSGCDYHQSILFIHTKCKHHTYNEIQAQVANGEKIGICLPLLETKVVDGN 97
LRI + ++ CD Q++L H K HTY A V + + + ++ +
Sbjct: 4 LRIVPYDVESNTNCDI*QTLLMFHELGKTHTYTNSNAYVV------VVVVGVVSQEIFST 165
Query: 98 LFVGASKNLKRTPKVHYHPIGHHHHRP-----PPPVTITINTTFIAAS 140
F L +H+H G H P TI +T+F + S
Sbjct: 166 YFTANCSFL*LPSSIHHHKFGSQSHLNDFFI*DPQQTIPSSTSFPSPS 309
>BG447806 similar to PIR|T10798|T107 pherophorin-S - Volvox carteri, partial
(4%)
Length = 448
Score = 32.0 bits (71), Expect = 0.25
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 196 GGDSGDGGNNGGGSGHGDKGDG 217
GGD G G +GGG+G GD G G
Sbjct: 223 GGDGGGHGGDGGGAGWGDFGGG 288
>TC92318 similar to PIR|B85356|B85356 glycine-rich protein [imported] -
Arabidopsis thaliana, partial (78%)
Length = 421
Score = 31.2 bits (69), Expect = 0.42
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Frame = +2
Query: 195 VGGDSGDGGNNGGGSGHGD---KGDGGDEDDSDNGSDSGA 231
+GG SG G G GSG G S +GS SGA
Sbjct: 248 IGGGSGSGAGAGAGSGSGSXPLSSSSSSSSSSSSGSGSGA 367
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.321 0.137 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,183,176
Number of Sequences: 36976
Number of extensions: 156576
Number of successful extensions: 2678
Number of sequences better than 10.0: 159
Number of HSP's better than 10.0 without gapping: 2085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2523
length of query: 262
length of database: 9,014,727
effective HSP length: 94
effective length of query: 168
effective length of database: 5,538,983
effective search space: 930549144
effective search space used: 930549144
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0008.6