BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0007.11
(264 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC76508 GP|3293555|gb|AAC25775.1| chlorophyll a/b binding protei... 515 e-147
TC76503 homologue to GP|506629|gb|AAA50172.1|| photosystem II ty... 492 e-140
TC76505 homologue to GP|9587207|gb|AAF89207.1| LHCII type I chlo... 490 e-139
TC76504 homologue to GP|506629|gb|AAA50172.1|| photosystem II ty... 489 e-139
TC76507 homologue to GP|506629|gb|AAA50172.1|| photosystem II ty... 487 e-138
TC76506 homologue to GP|506629|gb|AAA50172.1|| photosystem II ty... 486 e-138
TC85298 homologue to SP|P27520|CB23_PEA Chlorophyll A-B binding ... 414 e-116
TC85300 homologue to PIR|S33775|S33775 chlorophyll a/b-binding p... 350 2e-97
BG456653 homologue to GP|3293555|gb| chlorophyll a/b binding pro... 292 1e-79
TC82383 similar to GP|15430554|dbj|BAB64412. light-harvesting ch... 250 3e-67
BG456494 homologue to GP|2645999|gb| chlorophyll a/b binding pro... 242 1e-64
CA919263 similar to GP|12658406|gb light-harvesting complex II p... 228 1e-60
TC76645 similar to PIR|S16294|S16294 chlorophyll a/b-binding pro... 222 1e-58
TC76509 homologue to PIR|S29904|S29904 chlorophyll a/b-binding p... 196 1e-50
TC90290 similar to SP|P22686|CB2_CHLMO Chlorophyll A-B binding p... 160 4e-40
TC92187 similar to GP|12658406|gb|AAK01125.1 light-harvesting co... 160 5e-40
TC85508 homologue to PIR|S60608|S60608 chlorophyll a/b-binding p... 135 2e-32
TC76818 homologue to GP|13265501|gb|AAG40043.2 AT3g54890 {Arabid... 131 3e-31
TC79544 similar to PIR|F96510|F96510 light-harvesting complex pr... 129 2e-30
AA660574 homologue to GP|3293555|gb| chlorophyll a/b binding pro... 119 2e-27
>TC76508 GP|3293555|gb|AAC25775.1| chlorophyll a/b binding protein {Medicago
sativa}, complete
Length = 1190
Score = 515 bits (1326), Expect = e-147
Identities = 251/266 (94%), Positives = 260/266 (97%), Gaps = 2/266 (0%)
Frame = +2
Query: 1 MAASTMALSSPSLAGQALNLSPSSQEVG--RFSMRKAATTKKVVSSGSPWYGPDRVKYLG 58
MAAS+MALSSP+LAG+ + L+PSSQE+G RF+MRKAATTKKV SSGSPWYGPDRVKYLG
Sbjct: 77 MAASSMALSSPTLAGKPVKLTPSSQELGAARFTMRKAATTKKVASSGSPWYGPDRVKYLG 256
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 118
PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 257 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 436
Query: 119 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG 178
RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG
Sbjct: 437 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG 616
Query: 179 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 238
PLGEV DPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 617 PLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 796
Query: 239 ENLADHLSDPVNNNAWAYATNFVPGK 264
ENLADHL+DPVNNNAWAYATNFVPGK
Sbjct: 797 ENLADHLADPVNNNAWAYATNFVPGK 874
>TC76503 homologue to GP|506629|gb|AAA50172.1|| photosystem II type I
chlorophyll a/b-binding protein {Glycine max}, partial
(98%)
Length = 1148
Score = 492 bits (1267), Expect = e-140
Identities = 242/266 (90%), Positives = 252/266 (93%), Gaps = 2/266 (0%)
Frame = +1
Query: 1 MAASTMALSSPSLAGQALNLSPSSQE--VGRFSMRKAATTKKVVSSGSPWYGPDRVKYLG 58
MAASTM+LSS S G+A+ LSPS+Q+ VGR +MRKA TTKK V SGSPWYGPDRVKYLG
Sbjct: 55 MAASTMSLSSSSFVGKAIKLSPSTQDIGVGRVTMRKA-TTKKSVPSGSPWYGPDRVKYLG 231
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 118
PFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 232 PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 411
Query: 119 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG 178
RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA QVILMGAVEGYRIAGG
Sbjct: 412 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGG 591
Query: 179 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 238
PLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 592 PLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 771
Query: 239 ENLADHLSDPVNNNAWAYATNFVPGK 264
ENLADHL+DPVNNNAWAYATNF PGK
Sbjct: 772 ENLADHLADPVNNNAWAYATNFAPGK 849
>TC76505 homologue to GP|9587207|gb|AAF89207.1| LHCII type I chlorophyll
a/b-binding protein {Vigna radiata}, complete
Length = 1082
Score = 490 bits (1262), Expect = e-139
Identities = 241/266 (90%), Positives = 251/266 (93%), Gaps = 2/266 (0%)
Frame = +1
Query: 1 MAASTMALSSPSLAGQALNLSPSSQEV--GRFSMRKAATTKKVVSSGSPWYGPDRVKYLG 58
MAASTM+LSS SL G+A+ LSPS+ ++ GR +MRK TTKK V SGSPWYGPDRVKYLG
Sbjct: 64 MAASTMSLSSSSLVGKAIKLSPSTPDLVMGRITMRKT-TTKKNVPSGSPWYGPDRVKYLG 240
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 118
PFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHSRWAMLGALGCVFPELLA
Sbjct: 241 PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLA 420
Query: 119 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG 178
RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA QVILMGAVEGYRIAGG
Sbjct: 421 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGG 600
Query: 179 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 238
PLGEV DPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 601 PLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 780
Query: 239 ENLADHLSDPVNNNAWAYATNFVPGK 264
ENLADHL+DPVNNNAWAYATNF PGK
Sbjct: 781 ENLADHLADPVNNNAWAYATNFAPGK 858
>TC76504 homologue to GP|506629|gb|AAA50172.1|| photosystem II type I
chlorophyll a/b-binding protein {Glycine max}, complete
Length = 1134
Score = 489 bits (1259), Expect = e-139
Identities = 240/266 (90%), Positives = 251/266 (94%), Gaps = 2/266 (0%)
Frame = +1
Query: 1 MAASTMALSSPSLAGQALNLSPSSQE--VGRFSMRKAATTKKVVSSGSPWYGPDRVKYLG 58
MAASTM+LSS S G+A+ LSPS+Q+ VGR +MRK TTKK V SGSPWYGPDRVKYLG
Sbjct: 46 MAASTMSLSSSSFVGKAIKLSPSTQDIGVGRVTMRKT-TTKKSVPSGSPWYGPDRVKYLG 222
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 118
PFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 223 PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 402
Query: 119 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG 178
RNGV+FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA QVILMGAVEGYRIAGG
Sbjct: 403 RNGVQFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGG 582
Query: 179 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 238
PLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 583 PLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 762
Query: 239 ENLADHLSDPVNNNAWAYATNFVPGK 264
ENLADHL+DPVNNNAWAYATNF PGK
Sbjct: 763 ENLADHLADPVNNNAWAYATNFAPGK 840
>TC76507 homologue to GP|506629|gb|AAA50172.1|| photosystem II type I
chlorophyll a/b-binding protein {Glycine max}, complete
Length = 1029
Score = 487 bits (1253), Expect = e-138
Identities = 239/266 (89%), Positives = 250/266 (93%), Gaps = 2/266 (0%)
Frame = +1
Query: 1 MAASTMALSSPSLAGQALNLSPSSQEV--GRFSMRKAATTKKVVSSGSPWYGPDRVKYLG 58
MAASTMALSS S+ G+A+ LSPS+ ++ GR +MRK TTKK SGS WYGPDRVKYLG
Sbjct: 82 MAASTMALSSSSMVGKAIKLSPSTPDLVMGRITMRKT-TTKKTAPSGSQWYGPDRVKYLG 258
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 118
PFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA
Sbjct: 259 PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 438
Query: 119 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG 178
RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA QVILMGAVEGYRIAGG
Sbjct: 439 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGG 618
Query: 179 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 238
PLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 619 PLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 798
Query: 239 ENLADHLSDPVNNNAWAYATNFVPGK 264
ENLADH++DPVNNNAWA+ATNFVPGK
Sbjct: 799 ENLADHIADPVNNNAWAFATNFVPGK 876
>TC76506 homologue to GP|506629|gb|AAA50172.1|| photosystem II type I
chlorophyll a/b-binding protein {Glycine max}, complete
Length = 1057
Score = 486 bits (1251), Expect = e-138
Identities = 238/266 (89%), Positives = 250/266 (93%), Gaps = 2/266 (0%)
Frame = +1
Query: 1 MAASTMALSSPSLAGQALNLSPSSQEV--GRFSMRKAATTKKVVSSGSPWYGPDRVKYLG 58
MA STMALSS ++ G+A+ LSPS+ ++ GR +MRK T KK V SGSPWYGPDRVKYLG
Sbjct: 61 MATSTMALSSSTMVGKAIKLSPSTPDLVMGRITMRKT-TNKKNVPSGSPWYGPDRVKYLG 237
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 118
PFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 238 PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 417
Query: 119 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG 178
RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA QVILMGAVEGYRIAGG
Sbjct: 418 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGG 597
Query: 179 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 238
PLGEV DPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 598 PLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 777
Query: 239 ENLADHLSDPVNNNAWAYATNFVPGK 264
ENLADH++DPVNNNAWA+ATNFVPGK
Sbjct: 778 ENLADHITDPVNNNAWAFATNFVPGK 855
>TC85298 homologue to SP|P27520|CB23_PEA Chlorophyll A-B binding protein 215
chloroplast precursor (LHCII type II CAB-215) (LHCP).,
complete
Length = 1099
Score = 414 bits (1063), Expect = e-116
Identities = 195/236 (82%), Positives = 215/236 (90%)
Frame = +2
Query: 29 RFSMRKAATTKKVVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 88
RF+MR+ + + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 158 RFTMRRTVKS----APESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPE 325
Query: 89 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 148
TFA+NRELEVIHSRWAMLGALGC FPE+L +NGVKFGEAVWFKAG+QIFSEGGLDYLGNP
Sbjct: 326 TFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 505
Query: 149 SLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAEL 208
+L+HAQSILAIWATQV+LMG VEGYR+ GGPLGE DPLYPGG+FDPLGLADDP+AFAEL
Sbjct: 506 NLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAEL 685
Query: 209 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWAYATNFVPGK 264
KVKELKNGRLAMFSMFGFFVQAIVTGKGP++NL DH++DPV NNAWAYATNFVPG+
Sbjct: 686 KVKELKNGRLAMFSMFGFFVQAIVTGKGPVQNLYDHVADPVANNAWAYATNFVPGQ 853
>TC85300 homologue to PIR|S33775|S33775 chlorophyll a/b-binding protein -
garden pea, partial (96%)
Length = 1163
Score = 350 bits (899), Expect = 2e-97
Identities = 180/260 (69%), Positives = 195/260 (74%), Gaps = 2/260 (0%)
Frame = +3
Query: 6 MALSSPSLAGQALNLSPSSQEVGRFSMRKAATTKKVVSSGSPWYGPDRVKYLGPFSGEPP 65
MA SS ++ Q L A T + WYGPDRVKYLGPFS + P
Sbjct: 171 MAASSAAVVKQTPFLGQRKGAANPLRDVVAMGTSRFTMGNELWYGPDRVKYLGPFSAQTP 350
Query: 66 SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKF 124
SYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L + V F
Sbjct: 351 SYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDF 530
Query: 125 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVT 184
E VWFKAGSQIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+RI G P
Sbjct: 531 KEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEG 710
Query: 185 DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 243
+ LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENL D
Sbjct: 711 NNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLD 890
Query: 244 HLSDPVNNNAWAYATNFVPG 263
H+ +PV NNAW YAT FVPG
Sbjct: 891 HIDNPVANNAWVYATKFVPG 950
>BG456653 homologue to GP|3293555|gb| chlorophyll a/b binding protein
{Medicago sativa}, partial (55%)
Length = 511
Score = 292 bits (747), Expect = 1e-79
Identities = 141/148 (95%), Positives = 146/148 (98%)
Frame = -1
Query: 99 IHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA 158
IHSRWAMLGALGCVFPELL+RNGV+FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA
Sbjct: 511 IHSRWAMLGALGCVFPELLSRNGVQFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA 332
Query: 159 IWATQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRL 218
IWA QVILMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKELKNGRL
Sbjct: 331 IWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRL 152
Query: 219 AMFSMFGFFVQAIVTGKGPLENLADHLS 246
AMFSMFGFFVQAIVTGKGP+ENLADHL+
Sbjct: 151 AMFSMFGFFVQAIVTGKGPIENLADHLA 68
Score = 43.5 bits (101), Expect = 8e-05
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 246 SDPVNNNAWAYATNFVPGK 264
+DPVNNNAWAYATNF PGK
Sbjct: 9 ADPVNNNAWAYATNFAPGK 65
>TC82383 similar to GP|15430554|dbj|BAB64412. light-harvesting
chlorophyll-a/b binding protein LhcII-1.3 {Chlamydomonas
reinhardtii}, partial (62%)
Length = 615
Score = 250 bits (639), Expect = 3e-67
Identities = 122/161 (75%), Positives = 139/161 (85%), Gaps = 1/161 (0%)
Frame = +2
Query: 103 WAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 161
WAMLGALGCV PELL + +GVKFGEA WFKAG+QIF+ GL+YLGNPSLVHAQSI+A A
Sbjct: 2 WAMLGALGCVTPELLEKYSGVKFGEATWFKAGAQIFNRDGLNYLGNPSLVHAQSIIATLA 181
Query: 162 TQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMF 221
+QVILMG +EGYR+ GGP GE DPL+PG +FDPLGLADDP+ FAELKVKE+KNGRLAMF
Sbjct: 182 SQVILMGLIEGYRVNGGPAGEGLDPLHPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMF 361
Query: 222 SMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWAYATNFVP 262
SMFGFFVQAIVTGKGP+ NL DHL++P NN +A AT FVP
Sbjct: 362 SMFGFFVQAIVTGKGPIANLNDHLANPSVNNGFASATKFVP 484
Score = 30.4 bits (67), Expect = 0.73
Identities = 16/49 (32%), Positives = 26/49 (52%)
Frame = +2
Query: 73 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNG 121
PG+ +D GL+ DP+TFA+ + E+ + R AM G ++ G
Sbjct: 263 PGE-AFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 406
>BG456494 homologue to GP|2645999|gb| chlorophyll a/b binding protein of
LHCII type I precursor {Panax ginseng}, partial (45%)
Length = 535
Score = 242 bits (617), Expect = 1e-64
Identities = 117/121 (96%), Positives = 119/121 (97%)
Frame = -1
Query: 99 IHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA 158
IHSRWAMLGALGCVFPELL+RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA
Sbjct: 535 IHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILA 356
Query: 159 IWATQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRL 218
IWA QVILMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKELKNGRL
Sbjct: 355 IWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRL 176
Query: 219 A 219
A
Sbjct: 175 A 173
Score = 108 bits (271), Expect = 2e-24
Identities = 52/63 (82%), Positives = 55/63 (86%)
Frame = +3
Query: 29 RFSMRKAATTKKVVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE 88
R +MRKA TTKK V SGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSA+
Sbjct: 9 RVTMRKA-TTKKSVPSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSANLP 185
Query: 89 TFA 91
F+
Sbjct: 186FFS 194
>CA919263 similar to GP|12658406|gb light-harvesting complex II protein
precursor {Chlamydomonas reinhardtii}, partial (57%)
Length = 592
Score = 228 bits (582), Expect = 1e-60
Identities = 108/152 (71%), Positives = 123/152 (80%)
Frame = -3
Query: 111 CVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAV 170
CV PELLA NGV FGE+VWFKAG+QIF +GGL+YLGN +L+HAQSILA QV++MG
Sbjct: 584 CVTPELLAGNGVSFGESVWFKAGAQIFKDGGLNYLGNENLIHAQSILATLGFQVVVMGLA 405
Query: 171 EGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 230
E YR G + +PLYPGG FDPLGLADDP+ AELKVKELKNGRLAMFSMFGFF+QA
Sbjct: 404 EAYRANGADFIDAAEPLYPGGPFDPLGLADDPDTLAELKVKELKNGRLAMFSMFGFFIQA 225
Query: 231 IVTGKGPLENLADHLSDPVNNNAWAYATNFVP 262
IVTGKGP++NL DHL+DP NAWAYAT F P
Sbjct: 224 IVTGKGPIQNLNDHLADPSVANAWAYATKFTP 129
>TC76645 similar to PIR|S16294|S16294 chlorophyll a/b-binding protein type I
precursor - tomato, partial (89%)
Length = 1071
Score = 222 bits (565), Expect = 1e-58
Identities = 136/276 (49%), Positives = 168/276 (60%), Gaps = 24/276 (8%)
Frame = +3
Query: 1 MAASTMA--------LSSPSLAGQALNLSPSS------QEVGRFSMRKAATT--KKVVSS 44
+AAST A L +P A PSS + V FS +KAA +KV +
Sbjct: 90 IAASTAAASLGMSEMLGNPVKFSGATRSVPSSSTPSTFKTVALFSRKKAAPPPKQKVATP 269
Query: 45 GSP----WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 97
S WYGPDR +L E P YLTGE PGDYG+D GLS PE FAK + E
Sbjct: 270 ASEELAKWYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQGYE 449
Query: 98 VIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSI 156
+IH+RWAMLGA G + PE + G G EAVWFK G+ + G L+Y G P ++ I
Sbjct: 450 LIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINL--I 623
Query: 157 LAIWATQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNG 216
+A+ A +V+L+G E YRI G E+ D +PGG FDPLGLA+DP+ A LKVKE+KNG
Sbjct: 624 VAVVA-EVVLLGGAEYYRITNGL--ELEDKFHPGGPFDPLGLANDPDQAAILKVKEIKNG 794
Query: 217 RLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 252
RLAMF+M GFF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 795 RLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 902
>TC76509 homologue to PIR|S29904|S29904 chlorophyll a/b-binding protein -
English ivy (fragment), partial (53%)
Length = 481
Score = 196 bits (497), Expect = 1e-50
Identities = 94/104 (90%), Positives = 97/104 (92%)
Frame = +3
Query: 161 ATQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAM 220
A QVILMGAV RI GGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKELKNGRLAM
Sbjct: 3 AVQVILMGAVRVXRIXGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAM 182
Query: 221 FSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWAYATNFVPGK 264
FSMFGFFVQAIVTGKGP+ENLADHL+DPVNNNAWAYATNF PGK
Sbjct: 183 FSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFAPGK 314
>TC90290 similar to SP|P22686|CB2_CHLMO Chlorophyll A-B binding protein of
LHCII type I chloroplast precursor (CAB) (LHCP).,
partial (36%)
Length = 651
Score = 160 bits (406), Expect = 4e-40
Identities = 78/117 (66%), Positives = 90/117 (76%), Gaps = 2/117 (1%)
Frame = +2
Query: 43 SSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 101
S GS WYGPDR K+LGPFS PSYL GE+PGDYGWD+AGLSADPETF + R +EVIH+
Sbjct: 302 SKGSGWYGPDRPKFLGPFSASYTPSYLNGEYPGDYGWDSAGLSADPETFERYRTIEVIHA 481
Query: 102 RWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSIL 157
RWAMLGALGC+ PELLA+ GV F E VWFK G+ I G + YLG+P L HA SI+
Sbjct: 482 RWAMLGALGCLTPELLAKYQGVNFPEPVWFKTGAXILG-GSIXYLGSPXLXHAXSIV 649
>TC92187 similar to GP|12658406|gb|AAK01125.1 light-harvesting complex II
protein precursor {Chlamydomonas reinhardtii}, partial
(37%)
Length = 397
Score = 160 bits (405), Expect = 5e-40
Identities = 82/127 (64%), Positives = 96/127 (75%), Gaps = 1/127 (0%)
Frame = +2
Query: 7 ALSSPSLAGQALNLSPSSQEVGRFSMRKAATTKKVVSSGSPWYGPDRVKYLGPFS-GEPP 65
AL++ SLAG+A P+ KA+T V + WYGPDR K+LGPFS G+ P
Sbjct: 44 ALATRSLAGKAAVARPTKGA-------KASTV--VPRAAVEWYGPDRAKWLGPFSEGDVP 196
Query: 66 SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG 125
SYLTGEFPGDYGWDTAGLSADP+TF + RELE+IH+RWAMLGALGCV PELLA NG+ FG
Sbjct: 197 SYLTGEFPGDYGWDTAGLSADPQTFQRYRELELIHARWAMLGALGCVTPELLAGNGIPFG 376
Query: 126 EAVWFKA 132
E+VWFKA
Sbjct: 377 ESVWFKA 397
>TC85508 homologue to PIR|S60608|S60608 chlorophyll a/b-binding protein type
II precursor photosystem I - garden pea, complete
Length = 1270
Score = 135 bits (339), Expect = 2e-32
Identities = 98/275 (35%), Positives = 134/275 (48%), Gaps = 20/275 (7%)
Frame = +3
Query: 4 STMALSSPSLAGQALNLSPSSQEVGRFSMRKAATTKKVVSSGSPWYGPDRVKYLGP---- 59
S MA + S A A+ +SPSSQ+ G A + + S P RV+
Sbjct: 129 SIMASACASSAIAAVAISPSSQKNGSPMGTSKAFLGRKLKVNSNIAAPVRVRSTTTVCAA 308
Query: 60 --------FSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 110
F G PP +L G PGD+G+D GLS+DPE+ N + E++H RWAMLGA G
Sbjct: 309 AEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAG 488
Query: 111 CVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA-----TQVI 165
PE L + G+ W+ AG Q + + +L + I WA ++
Sbjct: 489 IFIPEFLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELIFIGWAEGRRWADIL 647
Query: 166 LMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELKVKELKNGRLAMFSM 223
G V I TD YPGG FDPLG + P+ EL+ KE+KNGRLAM ++
Sbjct: 648 NPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAV 827
Query: 224 FGFFVQAIVTGKGPLENLADHLSDPVNNNAWAYAT 258
G + Q I TG GP++NL HL+DP + +A T
Sbjct: 828 MGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFT 932
>TC76818 homologue to GP|13265501|gb|AAG40043.2 AT3g54890 {Arabidopsis
thaliana}, partial (84%)
Length = 1010
Score = 131 bits (329), Expect = 3e-31
Identities = 85/197 (43%), Positives = 106/197 (53%), Gaps = 6/197 (3%)
Frame = +1
Query: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 120
G+P PSYL G PGD+G+D L PE + +E E+IH RWAML G + PE L
Sbjct: 253 GQPRPSYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL--- 423
Query: 121 GVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP 179
G W KA GG YLGNP V ++ I + + + VE R
Sbjct: 424 ----GLGNWVKAQEWAALPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR----- 570
Query: 180 LGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGK 235
DP YPGG+FDPLG + DP+ F E K+KE+KNGRLA+ + G V Q G
Sbjct: 571 -SMEKDPEKKKYPGGAFDPLGYSKDPKKFHEYKIKEVKNGRLALLAFVGIVVQQTAYPGT 747
Query: 236 GPLENLADHLSDPVNNN 252
GPLENLA HL+DP +NN
Sbjct: 748 GPLENLATHLADPWHNN 798
>TC79544 similar to PIR|F96510|F96510 light-harvesting complex protein
[imported] - Arabidopsis thaliana, partial (82%)
Length = 1076
Score = 129 bits (323), Expect = 2e-30
Identities = 80/198 (40%), Positives = 114/198 (57%), Gaps = 12/198 (6%)
Frame = +1
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 122
+PP+YL G PGD+G+D GL DPE+ + E++HSR+AMLG LG + +LL GV
Sbjct: 265 DPPTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVLGILVTDLLRVAGV 444
Query: 123 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILM-----------GAVE 171
+WF+AG+ + ++ +LV Q +L +A M G+
Sbjct: 445 N-SIPIWFEAGAVKY-----EFANTGTLVVVQLLLMGYAETRRYMDFVSPGSQAKEGSFF 606
Query: 172 GYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 230
G + G L +P YPGG +PLGLA D ++ E K+KE+KNGRLAM ++ G FVQA
Sbjct: 607 GLEASLGGL----EPGYPGGPLLNPLGLAKDIKSAREWKLKEIKNGRLAMVAILGIFVQA 774
Query: 231 IVTGKGPLENLADHLSDP 248
VT GP++NL +HLS+P
Sbjct: 775 SVTHVGPIDNLVEHLSNP 828
>AA660574 homologue to GP|3293555|gb| chlorophyll a/b binding protein
{Medicago sativa}, partial (39%)
Length = 590
Score = 119 bits (297), Expect = 2e-27
Identities = 63/97 (64%), Positives = 69/97 (70%), Gaps = 5/97 (5%)
Frame = +2
Query: 49 YGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNR-ELEVIH-SRWAML 106
YGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP + ELEVI WAML
Sbjct: 197 YGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPRDIRQETVELEVIP*XXWAML 376
Query: 107 GALGCVFPELLARNGVKFG---EAVWFKAGSQIFSEG 140
G LG +F + + F +WFKAGSQIF+ G
Sbjct: 377 GNLGMLFFPXTFVSAMVFKFX*RLLWFKAGSQIFNXG 487
Score = 76.3 bits (186), Expect(2) = 3e-17
Identities = 44/75 (58%), Positives = 51/75 (67%), Gaps = 2/75 (2%)
Frame = +1
Query: 1 MAASTMALSSPSLAGQALNLSPSSQEVG--RFSMRKAATTKKVVSSGSPWYGPDRVKYLG 58
MAAS+MALSSP+LAG+ + L+PSSQE+G RF+MRKAATTKKV SSGSPW P L
Sbjct: 46 MAASSMALSSPTLAGKPVKLTPSSQELGAARFTMRKAATTKKVASSGSPWLRPRPC*VLR 225
Query: 59 PFSGEPPSYLTGEFP 73
P P L P
Sbjct: 226 PILW*APVLLDWRVP 270
Score = 28.9 bits (63), Expect(2) = 3e-17
Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Frame = +3
Query: 87 PETFAKNR-ELEVIHSRWAML-GALGCVF-PELLAR----NGVK--FGEAVWFKAGSQIF 137
PETFAK L+ H + G LGC F P LL+ N V+ +G + +
Sbjct: 312 PETFAKKPWNLKSSHXXVGLCWGTLGCCFSPXLLSPQWCLNSVEGCYGS----RPDPKFL 479
Query: 138 SEGGLDYLGNPSL-VHAQSILAIWATQVI 165
++ Y G P HA LAIW TQ I
Sbjct: 480 TKVXXXYFGLPQFWSHAPXHLAIWXTQFI 566
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.317 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,132,336
Number of Sequences: 36976
Number of extensions: 87434
Number of successful extensions: 499
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of query: 264
length of database: 9,014,727
effective HSP length: 94
effective length of query: 170
effective length of database: 5,538,983
effective search space: 941627110
effective search space used: 941627110
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0007.11