TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0005.1
         (346 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BF644371 weakly similar to GP|8927657|gb| EST gb|N38213 comes fr...    65  5e-11
TC79942 similar to GP|8927657|gb|AAF82148.1| EST gb|N38213 comes...    44  1e-04
BG450342 similar to GP|8927657|gb EST gb|N38213 comes from this ...    34  0.095
BE323865 similar to PIR|E96814|E96 hypothetical protein T30F21.8...    30  1.0
TC86622 weakly similar to GP|20197623|gb|AAM15156.1 putative myo...    30  1.4
BG451708                                                               29  2.3
TC76311 homologue to GP|3204132|emb|CAA07235.1 extensin {Cicer a...    29  3.0
TC91322 similar to GP|16550932|gb|AAL25648.1 inward-rectifying K...    28  6.8

>BF644371 weakly similar to GP|8927657|gb| EST gb|N38213 comes from this
           gene. {Arabidopsis thaliana}, partial (4%)
          Length = 673

 Score = 64.7 bits (156), Expect = 5e-11
 Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 26/194 (13%)
 Frame = +3

Query: 3   DTHFARLNAIYQQICSKLRQHESSPHEPKTFNVEKFRGHKRLYEDIFAMFRLRKSQITPE 62
           +++   L+ +YQ+I +KL QH+S PH+PK+  +EK +  K + E +    ++ KS I+P 
Sbjct: 3   ESYLPELSEMYQKIATKLHQHDSLPHQPKSDQLEKLKVFKMMLERLITFLQVSKSNISPS 182

Query: 63  ISERVDRVETLINSIIQ------------------HQNLSSHQGKHSADVQSKQQVLPQV 104
           + E++   E  I + I                   H +  S     +  VQS +  +   
Sbjct: 183 LKEKLGSYEKQIINFINTNRPRKISSLQPGQLPPPHMHSMSQTQPQATQVQSHENQMNTQ 362

Query: 105 LGTQNDHLAKQTSQRNNMCLQEQQ-------VAKQYGNSEQGVNQLSIKEGPGKAVQRQT 157
           L T N      T Q+NN+   +           +   N+ Q    L + +G   ++Q+ +
Sbjct: 363 LQTTNMQGPVPTMQQNNLTSMQHSSLXGVSTAQQNMMNTMQPSASLDLGQGNMSSLQQNS 542

Query: 158 LCA-QATEASGVST 170
           + A Q T  S +S+
Sbjct: 543 VTAPQQTNVSSLSS 584


>TC79942 similar to GP|8927657|gb|AAF82148.1| EST gb|N38213 comes from this
           gene. {Arabidopsis thaliana}, partial (9%)
          Length = 879

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 18/58 (31%), Positives = 36/58 (62%)
 Frame = +3

Query: 1   MKDTHFARLNAIYQQICSKLRQHESSPHEPKTFNVEKFRGHKRLYEDIFAMFRLRKSQ 58
           MK+++  +L+ + Q+I +KL+QH+S P +PK+  +E  +  K + E +    ++ K Q
Sbjct: 552 MKESYLPKLSEMIQKIATKLQQHDSLPQQPKSDELEMLKEFKMVLERLITFLQVSKEQ 725


>BG450342 similar to GP|8927657|gb EST gb|N38213 comes from this gene.
           {Arabidopsis thaliana}, partial (10%)
          Length = 669

 Score = 33.9 bits (76), Expect = 0.095
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
 Frame = +2

Query: 153 VQRQTLCAQATEASGVSTNDMGFSSSALIK-------GSGNLNEVSHKPALISEKPSAAM 205
           V  Q   + A  A  ++    G S+S L+          GN    S   + ++E+P   M
Sbjct: 311 VGHQQTGSGAAPAQSLAIGTPGISASPLLAEFTGPDGAHGNALAPSSGKSTVTEEP---M 481

Query: 206 QRLIGVFTSMSSEALGASIGKIREVVHLNDAI 237
            RLI   +S++  AL A++  I  V+ +ND I
Sbjct: 482 DRLIKAVSSLTPAALSAAVSDISSVISMNDRI 577


>BE323865 similar to PIR|E96814|E96 hypothetical protein T30F21.8 [imported]
           - Arabidopsis thaliana, partial (34%)
          Length = 403

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 237 IPAAKFIDEPLEMAGQQNQPSRIPQGRKMARNINAMAFDTSRSCARTHESF 287
           + A+ FID+ + + G  + P+RI +  K +   +A    T   CA T E+F
Sbjct: 250 LQASHFIDDKIPVLGVNSDPTRIDEVEKFSGEFDATR-STGHLCAATVENF 399


>TC86622 weakly similar to GP|20197623|gb|AAM15156.1 putative myosin heavy
            chain {Arabidopsis thaliana}, partial (17%)
          Length = 2546

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 71/313 (22%), Positives = 119/313 (37%), Gaps = 30/313 (9%)
 Frame = +3

Query: 2    KDTHFARLNAIYQQICSKLRQHESSPHEPKTFNVEKFRGHKRLYEDIFAM----FRLRKS 57
            K+ +F +  A+Y+   S L+   S+    K   V++    K   ED+        +  KS
Sbjct: 1167 KN*NFVQEIAVYESKLSDLQSKLSAALVEKDETVKEILASKNAAEDLVTQHNEEVQTLKS 1346

Query: 58   QITPEISERVDRVETLIN------SII--QHQNLSSHQGKHSADVQSKQQVLPQVLGTQN 109
            QI+  I +R    ET  N      SII    + L  HQ K+   ++S+ + L   +  ++
Sbjct: 1347 QISSVIDDRNLLNETNQNLKKELESIILDLEEKLKEHQ-KNEDSLKSEVETLKIEIAEKS 1523

Query: 110  ----------DHLAKQTSQRNNMCLQEQQVAKQ--------YGNSEQGVNQLSIKEGPGK 151
                        LAK  S+ +      Q  A Q        + + EQ ++++++  G   
Sbjct: 1524 ALQSRLHEIEAQLAKAESRLHEEVGSVQAAASQREVDLSSKFEDYEQKISEINVLNGKVA 1703

Query: 152  AVQRQTLCAQATEASGVSTNDMGFSSSALIKGSGNLNEVSHKPALISEKPSAAMQRLIGV 211
             ++++   AQ T A+            A +K S  + E+  K   IS      +Q+ +  
Sbjct: 1704 ELEKELHLAQDTIANQKGEESQKLELEAALKNS--VEELETKKNEIS-----LLQKQVIE 1862

Query: 212  FTSMSSEALGASIGKIREVVHLNDAIPAAKFIDEPLEMAGQQNQPSRIPQGRKMARNINA 271
            F     +A      K  E V   DA          LE+  +    S  P  RK  +   A
Sbjct: 1863 FEQKLQQADEKISVKGEEAVDKKDA----------LEVKSRDFSISS-PSKRKSKKKSEA 2009

Query: 272  MAFDTSRSCARTH 284
                TS S + TH
Sbjct: 2010 TTPQTSTSSSETH 2048


>BG451708 
          Length = 608

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 23/72 (31%), Positives = 35/72 (47%), Gaps = 4/72 (5%)
 Frame = -1

Query: 276 TSRSCARTHESFNQLTDVEEPDLDLVASKVKRSRIEVIYLLSVFFFFMNAIYKTRYTIFY 335
           T   CARTHE F    D+E  +  ++  +   +  E  Y +SV    +  I +T+Y  FY
Sbjct: 293 TQFDCARTHE*FAYTLDIEGFET*VLLIR*DCANKE--YRMSVCKDRLLTILETQYLPFY 120

Query: 336 P----VKSCYFL 343
           P    + +CY L
Sbjct: 119 PNTQGIPTCYRL 84


>TC76311 homologue to GP|3204132|emb|CAA07235.1 extensin {Cicer arietinum},
           partial (77%)
          Length = 973

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 17/49 (34%), Positives = 25/49 (50%)
 Frame = +1

Query: 75  NSIIQHQNLSSHQGKHSADVQSKQQVLPQVLGTQNDHLAKQTSQRNNMC 123
           NS+      S HQG ++  + +K Q LP    + N  L K +S  NN+C
Sbjct: 466 NSVPYKSCFSFHQGINATSIGNKVQHLPSCRSSLNKSL-KASSLSNNIC 609


>TC91322 similar to GP|16550932|gb|AAL25648.1 inward-rectifying K+ channel
           {Eucalyptus camaldulensis}, partial (2%)
          Length = 661

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/52 (28%), Positives = 25/52 (47%), Gaps = 6/52 (11%)
 Frame = -3

Query: 301 VASKVKRS------RIEVIYLLSVFFFFMNAIYKTRYTIFYPVKSCYFLRCS 346
           +  KVKRS        +   ++ + +++   IYKT Y +F  +  CY   CS
Sbjct: 377 ICCKVKRSITFFSLYFQTTLIIMLLYYY---IYKTFYNVFVAITHCYM*CCS 231


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.317    0.130    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,060,598
Number of Sequences: 36976
Number of extensions: 108356
Number of successful extensions: 667
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of query: 346
length of database: 9,014,727
effective HSP length: 97
effective length of query: 249
effective length of database: 5,428,055
effective search space: 1351585695
effective search space used: 1351585695
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)