BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0004b.4
(929 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alterna... 297 1e-80
BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin... 231 1e-60
BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - ... 96 2e-31
TC93153 similar to GP|14715220|emb|CAC44106. gag polyprotein {Ci... 119 4e-27
BG586326 similar to PIR|G84493|G8 probable retroelement pol poly... 108 7e-24
BG644740 similar to PIR|A84460|A84 probable retroelement pol pol... 89 1e-17
AL366725 52 1e-06
TC87383 similar to GP|19168656|emb|CAD26175. DNA-DIRECTED RNA PO... 51 2e-06
TC88387 similar to GP|13357253|gb|AAK20050.1 putative zinc finge... 45 1e-04
TC87382 similar to EGAD|146423|156195 vitellogenin {Anolis pulch... 45 2e-04
CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product ... 44 2e-04
BG647713 homologue to GP|15042313|gb| 232R {Chilo iridescent vir... 44 4e-04
BG645355 similar to PIR|G96590|G965 hypothetical protein T24C10.... 42 0.001
CB893783 weakly similar to GP|22830935|dbj hypothetical protein~... 41 0.002
TC82733 similar to GP|10177404|dbj|BAB10535. gene_id:K24M7.12~pi... 35 0.10
BG644717 28 0.57
TC92636 homologue to GP|15042313|gb|AAK82093.1 232R {Chilo iride... 33 0.66
TC78961 similar to GP|18252179|gb|AAL61922.1 unknown protein {Ar... 32 1.5
TC90680 similar to GP|12836314|dbj|BAB23601. data source:SPTR s... 30 3.3
TC87868 similar to PIR|T05112|T05112 splicing factor 9G8-like SR... 30 3.3
>TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alternaria
alternata}, partial (21%)
Length = 1540
Score = 297 bits (760), Expect = 1e-80
Identities = 168/395 (42%), Positives = 242/395 (60%), Gaps = 14/395 (3%)
Frame = +1
Query: 534 VVQDFEDVF-PEDVPGIPPVRDM-EFTIDIVPGTG----PISIAP-YRMAPAELTELKSQ 586
V+++F D+F PE +P R + + I ++P P+ P Y M+ EL LK
Sbjct: 343 VLEEFPDLFNPEKAYQVPASRGLLDHAIPLIPDKDGNDPPLPWGPLYGMSRQELLVLKKT 522
Query: 587 LEDLTKKGFIRPSVSPWGAPVLLVKKKDGRSRLCVDYRQLNKVTIKNRYPLPRIDDLMDQ 646
LEDL KGFI+ S S GAPVL V+K G R CVDYR LN +T K+RYPLP I + + +
Sbjct: 523 LEDLLDKGFIKASGSAAGAPVLFVRKPGGGIRFCVDYRALNAITKKDRYPLPLISETLRR 702
Query: 647 LKGAAIFSKIDLRSGYHQIRVKDEDIQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNR 706
+ GA F+K+D+ + +H++R+KDED +KTAFRTRYG +E++V PFG+T APA F Y+N+
Sbjct: 703 VAGARWFTKLDVVAAFHKMRIKDEDQEKTAFRTRYGLFEWIVCPFGLTGAPATFQRYINK 882
Query: 707 IFHPFLDRFVVVFIDDILIYSR-NREEHEEHLRQVLQVLRDKVLYANATKCEFWLEEVKF 765
H FLD FV +IDD+LIY+ ++++HE +R+VL+ L D L + KCEF + VK+
Sbjct: 883 TLHEFLDDFVTAYIDDVLIYTTGSKKDHEAQVRRVLRRLADAGLSLDPKKCEFSVTTVKY 1062
Query: 766 LGHVI-S*EGIAVDPSKVEAVLAWERPKTVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKL 824
+G ++ + +G++ DP K+ A+ W P +V RSF+G YY+ FI G+++I PLT+L
Sbjct: 1063VGFILTAGKGVSCDPLKLAAIRDWLPPGSVKGARSFLGFCNYYKDFIPGYSEITEPLTRL 1242
Query: 825 TRKNQPFAWTEDCEQSFQDMKKRLTTAPVLTLPQEKEPYEVYCDASYQGLGCVLMQH--- 881
TRK+ PF W + E +F +K+ PVL + + V D S LG VL Q
Sbjct: 1243TRKDFPFRWGAEQEAAFTKLKRLFAEEPVLRMFDPEAVTTVETDCSGFALGGVLTQEDGT 1422
Query: 882 --RKAVAYSSRQLKIHERNYPTHDLELAAVVFALK 914
VA+ S++L E NYP HD EL AV L+
Sbjct: 1423GAAHPVAFHSQRLSPAEYNYPIHDKELLAVWACLR 1527
>BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin cluster;
Ty3-Gypsy type {Oryza sativa}, partial (15%)
Length = 716
Score = 231 bits (588), Expect = 1e-60
Identities = 127/238 (53%), Positives = 157/238 (65%), Gaps = 5/238 (2%)
Frame = +2
Query: 549 IPPVRDMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAPVL 608
+PP ++F ID++P PI I YR+ P +L LK QL+DL +KGFI+PS+ P G VL
Sbjct: 17 VPPEWKIDFGIDLLPNMNPI*IPSYRINPLKLKVLKLQLKDLLEKGFIQPSIYP*GVVVL 196
Query: 609 LVKKKDGRSRLCVDYRQLNKVTIKNRYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVK 668
+KKKDG R+ +DY QLN V IK +YPLP ID+L D L+G+ F KIDLR G HQ RV
Sbjct: 197 FLKKKDGFLRMSIDYPQLNNVNIKIKYPLPLIDELFDNLQGSKWFFKIDLRLG*HQHRVI 376
Query: 669 DEDIQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSR 728
ED+ KTAFR RYGHYE LVM FG TN P FM+ MNR+F +LD V+VF +DILIYS+
Sbjct: 377 GEDVPKTAFRIRYGHYEILVMSFG*TNPPMAFMELMNRVFQDYLDSLVIVFSNDILIYSK 556
Query: 729 NREEHEEHLRQVLQVLRDKVLYANATKCEF----WLEEVKFLG-HVIS*EGIAVDPSK 781
N EHE HLR L+VL+D L C+ L EV F HVIS EG+ VD +
Sbjct: 557 NENEHENHLRLALKVLKDIGL------CQISYV*ILVEVGFFSLHVISGEGLKVDSKR 712
>BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - Arabidopsis
thaliana, partial (13%)
Length = 763
Score = 95.5 bits (236), Expect(2) = 2e-31
Identities = 46/133 (34%), Positives = 79/133 (58%)
Frame = +2
Query: 670 EDIQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRN 729
+D++KTAF T G Y Y VMPFG+ NA + + +NR+F L + V+IDD+L+ S
Sbjct: 11 DDLEKTAFITDRGTYCYKVMPFGLKNAGSTYQRLVNRMFADKLGNTMEVYIDDMLVKSLR 190
Query: 730 REEHEEHLRQVLQVLRDKVLYANATKCEFWLEEVKFLGHVIS*EGIAVDPSKVEAVLAWE 789
+H HL++ + L + ++ N KC F + +FLG++++ +GI V+P ++ A+L
Sbjct: 191 ATDHLNHLKE*FKTLDEYIMKLNPAKCTFGVTSGEFLGYIVTQQGIEVNPKQITAILDLP 370
Query: 790 RPKTVTDIRSFIG 802
PK +++ G
Sbjct: 371 SPKNSREVQRLTG 409
Score = 59.7 bits (143), Expect(2) = 2e-31
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Frame = +3
Query: 809 RFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKKRLTTAPVLTLPQEKEPYEVYCD 868
RFI P KL N+ F W E CE++F+ +K+ LTT PVL+ P+ + +Y
Sbjct: 429 RFISRSTDKCLPFYKLLCGNKRFVWDEKCEEAFEQLKQYLTTPPVLSKPEAGDTLSLYIA 608
Query: 869 ASYQGLGCVLMQ----HRKAVAYSSRQLKIHERNYPTHDLELAAVV 910
S + VL++ +K + Y+S+++ E YPT + AV+
Sbjct: 609 ISSTAVSSVLIREDRGEQKPIFYTSKRMTDPETRYPTLEKMAFAVI 746
>TC93153 similar to GP|14715220|emb|CAC44106. gag polyprotein {Cicer
arietinum}, partial (8%)
Length = 516
Score = 119 bits (299), Expect = 4e-27
Identities = 66/170 (38%), Positives = 94/170 (54%), Gaps = 1/170 (0%)
Frame = +2
Query: 33 AATAALVAAQNQAEENARRVQREER-ELAAAQTRGLNDFKRQDPPKFSGGFDPEEADLWL 91
++ AALVAA E A+ VQ+ + + + TR L F R PP F G + P+ A WL
Sbjct: 11 SSDAALVAA---LEAVAQAVQQLPKVDTGSDGTRMLETFLRNHPPTFKGRYAPDGA*KWL 181
Query: 92 KELEKIFTFLRTTAEMKVDYETYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLDKY 151
KE+E+IF ++ KV + T++L EA+ WW ++E D +TW FR FL +Y
Sbjct: 182 KEIERIFRVMQCFETQKVQFGTHMLAEEADDWWISLLPVLEQDDAVVTWAMFRKEFLGRY 361
Query: 152 FPRSARAAKEAQFLRLRQGGMTVAEYAAKLESLAKHFRYFRGQIDEGYMC 201
FP R KE +FL L+QG M+V EYAAK LA + ++ + E C
Sbjct: 362 FPEDVRGKKEIEFLELKQGDMSVTEYAAKFVELATFYPHYSAETAEFSKC 511
>BG586326 similar to PIR|G84493|G8 probable retroelement pol polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 736
Score = 108 bits (271), Expect = 7e-24
Identities = 53/75 (70%), Positives = 60/75 (79%)
Frame = +2
Query: 849 TTAPVLTLPQEKEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAA 908
T+AP+L LP E Y VY DAS GLGCVL QH K +AY+SRQL+ HE NYPTHDLE+AA
Sbjct: 8 TSAPILVLP-ELITYVVYTDASITGLGCVLTQHEKVIAYASRQLRKHEGNYPTHDLEMAA 184
Query: 909 VVFALKIWRHYLYGS 923
VVFALKIWR YLYG+
Sbjct: 185 VVFALKIWRSYLYGA 229
>BG644740 similar to PIR|A84460|A84 probable retroelement pol polyprotein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 754
Score = 88.6 bits (218), Expect = 1e-17
Identities = 44/78 (56%), Positives = 57/78 (72%), Gaps = 4/78 (5%)
Frame = -1
Query: 588 EDLT----KKGFIRPSVSPWGAPVLLVKKKDGRSRLCVDYRQLNKVTIKNRYPLPRIDDL 643
+DLT +K F +PS+SP GA +L V+KKDG R+C+DYRQ NKVT KN+YPLPRID+L
Sbjct: 301 KDLT*RFARKRFQQPSISP*GAALLFVRKKDGYFRMCIDYRQFNKVTTKNKYPLPRIDNL 122
Query: 644 MDQLKGAAIFSKIDLRSG 661
D+++ F IDLR G
Sbjct: 121 FDKIQEDCYF*NIDLRLG 68
>AL366725
Length = 485
Score = 51.6 bits (122), Expect = 1e-06
Identities = 44/175 (25%), Positives = 70/175 (39%), Gaps = 12/175 (6%)
Frame = +2
Query: 186 KHFRYFRGQIDEGYMCERFIEGLCYELQRAVQ-------PLGLNRYQVLVEKTKGIEAID 238
K + ++ + E C +F GL +++RA+ P +N ++ E TK + +
Sbjct: 2 KFYPHYAAETAEFSKCIKFENGLRPDIKRAIGYQQLRVFPDLVNTCRIYEEDTKAHDKVV 181
Query: 239 NARGKFQGL---NKPYQGSG--GPARTNQGRGDKGRHFQKKPYVRPQGRGTTSGSFYPTG 293
N R K +G KPY G R R K + + G + P
Sbjct: 182 NER-KTKGQ*SRPKPYSAPADKGKQRMVDDRRPKKKDAPAEIVCFNYGEKGHKSNVCP-- 352
Query: 294 GNAIALRTPSGNREDVTCFRCNKKGHYANHCSESLAACWNCNKPGHTAAECRIPK 348
+E C RC+KKGH C + C+NCN+ GH ++C+ PK
Sbjct: 353 ------------KEIKKCVRCDKKGHIVADCKRNDIVCFNCNEEGHIGSQCKQPK 481
>TC87383 similar to GP|19168656|emb|CAD26175. DNA-DIRECTED RNA POLYMERASE II
{Encephalitozoon cuniculi}, partial (0%)
Length = 1247
Score = 50.8 bits (120), Expect = 2e-06
Identities = 39/139 (28%), Positives = 57/139 (40%), Gaps = 2/139 (1%)
Frame = -2
Query: 17 QQVTNTAAREEAEAQRAATAALVAAQNQAEENARRVQREERELAAAQTRGLNDFKRQDPP 76
Q++ N A + EAQ+ V++ + + R QR E ++ ND K D P
Sbjct: 871 QEIVN-AQQALLEAQQKRFKDHVSSSDSLSSRSSRSQRREFQM--------NDIK*-DIP 722
Query: 77 KFSGGFDPEEADLWLKELEKIFTFLRTTAEMKVDYETYLLTGEAEYWWRGA--RAMMEAD 134
F G P++ WL+ +E++F + E KV L A WW R E
Sbjct: 721 DFEGNLQPDDLLDWLQIMERLFKYKEVLEEQKVKIVAAKLKKLASIWWENVKRRRKREGK 542
Query: 135 HQAITWECFRGAFLDKYFP 153
+ TWE R KY P
Sbjct: 541 SKIKTWEKMRQKLTRKYLP 485
>TC88387 similar to GP|13357253|gb|AAK20050.1 putative zinc finger protein
{Oryza sativa (japonica cultivar-group)}, partial (96%)
Length = 1286
Score = 45.1 bits (105), Expect = 1e-04
Identities = 18/41 (43%), Positives = 24/41 (57%)
Frame = +1
Query: 304 GNREDVTCFRCNKKGHYANHCSESLAACWNCNKPGHTAAEC 344
G +D C C + GHY C ++A C NC+ PGH A+EC
Sbjct: 403 GFSQDNLCKNCKRPGHYVRECP-NVAVCHNCSLPGHIASEC 522
Score = 44.3 bits (103), Expect = 2e-04
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 311 CFRCNKKGHYANHCSESLAACWNCNKPGHTAAEC 344
C C+ GH A+ CS + CWNC +PGH A+ C
Sbjct: 481 CHNCSLPGHIASECSTK-SLCWNCKEPGHMASSC 579
Score = 39.7 bits (91), Expect = 0.005
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 311 CFRCNKKGHYANHCSESLAACWNCNKPGHTAAECRIPK 348
C+ C + GH A+ C C C K GH A EC +P+
Sbjct: 538 CWNCKEPGHMASSCPNE-GICHTCGKAGHRARECTVPQ 648
Score = 39.3 bits (90), Expect = 0.007
Identities = 18/47 (38%), Positives = 24/47 (50%)
Frame = +1
Query: 311 CFRCNKKGHYANHCSESLAACWNCNKPGHTAAECRIPKVEAAANVAG 357
C C K+GH A C+ AC NC K GH A +C + N++G
Sbjct: 673 CNNCYKQGHIAVECTNE-KACNNCRKTGHLARDCPNDPICNLCNISG 810
Score = 37.4 bits (85), Expect = 0.027
Identities = 19/53 (35%), Positives = 23/53 (42%), Gaps = 1/53 (1%)
Frame = +1
Query: 293 GGNAIALRTPSGNREDVTCFRCNKKGHYANHC-SESLAACWNCNKPGHTAAEC 344
GG ++ G DV C C + GH + C L C NC GH A EC
Sbjct: 859 GGGSLRGGYRDGGFRDVVCRSCQQFGHMSRDCMGGPLMICQNCGGRGHQAYEC 1017
Score = 36.2 bits (82), Expect = 0.060
Identities = 17/40 (42%), Positives = 18/40 (44%), Gaps = 6/40 (15%)
Frame = +1
Query: 311 CFRCNKKGHYANHCSE------SLAACWNCNKPGHTAAEC 344
C C K GH A C+ L C NC K GH A EC
Sbjct: 595 CHTCGKAGHRARECTVPQKPPGDLRLCNNCYKQGHIAVEC 714
>TC87382 similar to EGAD|146423|156195 vitellogenin {Anolis pulchellus},
partial (7%)
Length = 2304
Score = 44.7 bits (104), Expect = 2e-04
Identities = 36/129 (27%), Positives = 49/129 (37%), Gaps = 4/129 (3%)
Frame = +2
Query: 29 EAQRAATAALVAAQNQAEENARRVQREERELAAAQTRGL--NDFKRQDPPKFSGGFDPEE 86
E A A L A Q + E + + +Q R L ND K D P F G ++
Sbjct: 485 EIINAQQALLEAEQRRFEGDVSYSDSSSSRSSHSQRRQLQMNDIK-VDIPDFEGNLQLDD 661
Query: 87 ADLWLKELEKIFTFLRTTAEMKVDYETYLLTGEAEYWWRG--ARAMMEADHQAITWECFR 144
WL+ +E++F + E KV L A WW R E + TW+ R
Sbjct: 662 FLDWLQTIERVFEYKEVPEEQKVKIVAAKLKKHALIWWENLKRRRKREGKSKIKTWDKMR 841
Query: 145 GAFLDKYFP 153
KY P
Sbjct: 842 QKLTRKYLP 868
>CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product {Drosophila
melanogaster}, partial (20%)
Length = 192
Score = 44.3 bits (103), Expect = 2e-04
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Frame = +1
Query: 873 GLGCVLMQ-----HRKAVAYSSRQLKIHERNYPTHDLELAAVVFALKIWRHYLYGSTF 925
G+G L Q H +AY+SR L ERNY + E A ++A++ +RHYL+G F
Sbjct: 13 GIGAGLSQKDEENHEHPIAYASRLLTAAERNYTVVERECLAAIWAIRNFRHYLHGPKF 186
>BG647713 homologue to GP|15042313|gb| 232R {Chilo iridescent virus}, partial
(1%)
Length = 726
Score = 43.5 bits (101), Expect = 4e-04
Identities = 32/136 (23%), Positives = 51/136 (36%), Gaps = 2/136 (1%)
Frame = +2
Query: 18 QVTNTAAREEAEAQRAATAALVAAQNQAEENARRVQREERELAAAQTRGLNDFKRQDPPK 77
Q T A + EAQR + + + + R R + ++ + D P
Sbjct: 200 QETVNAQQALLEAQRRRNDDDGSGSDSSSSRSSRSHRRQTRMSKIKV---------DIPD 352
Query: 78 FSGGFDPEEADLWLKELEKIFTFLRTTAEMKVDYETYLLTGEAEYWWRGARAM--MEADH 135
F G P+E WL+ +E++F + E KV L A WW+ + E
Sbjct: 353 F*GKLQPDEFVDWLQTIERVFKYKEVAEEQKVKIVAAKLKKHASIWWKNLKRKRNCEGKS 532
Query: 136 QAITWECFRGAFLDKY 151
+ TW+ R KY
Sbjct: 533 KIKTWDKMRQKLTRKY 580
>BG645355 similar to PIR|G96590|G965 hypothetical protein T24C10.5 [imported]
- Arabidopsis thaliana, partial (5%)
Length = 627
Score = 42.0 bits (97), Expect = 0.001
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 13/79 (16%)
Frame = -1
Query: 292 TGGNAIALRTPSGNREDVTCFRCNKKGHYANHCSESLAA-------------CWNCNKPG 338
T G A C++C + GH+A++C AA C+ CN+PG
Sbjct: 558 TAGGAYVNTVSGSGGASGKCYKCQQPGHWASNCPSMSAANRVSGGSGGASGNCYKCNQPG 379
Query: 339 HTAAECRIPKVEAAANVAG 357
H A C P + AA G
Sbjct: 378 HWANNC--PNMSAAPQSHG 328
Score = 31.6 bits (70), Expect = 1.5
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -1
Query: 248 NKPYQGSGGP-ARTNQGRGD-KGRHFQ-KKPYVRPQGRGTTSGSFYPTGGNAIALRTPSG 304
N P Q +GG T G G G+ ++ ++P + S + +GG+ A SG
Sbjct: 573 NPPEQTAGGAYVNTVSGSGGASGKCYKCQQPGHWASNCPSMSAANRVSGGSGGA----SG 406
Query: 305 NREDVTCFRCNKKGHYANHCSESLAA 330
N C++CN+ GH+AN+C AA
Sbjct: 405 N-----CYKCNQPGHWANNCPNMSAA 343
>CB893783 weakly similar to GP|22830935|dbj hypothetical protein~similar to
gag-pol polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 853
Score = 40.8 bits (94), Expect = 0.002
Identities = 45/195 (23%), Positives = 80/195 (40%), Gaps = 26/195 (13%)
Frame = +2
Query: 396 LFDSGATHSFIDIACAARLKLEVSKLPFELTVSTPASKSLVTNTACLECPWMYLDKKFVA 455
+ DSG+ + + +L+L P + + V + C + + +K+
Sbjct: 269 IIDSGSCENVVSNYMVEKLELPTKDHPHRYKLQWLKKGNEVRVSKCCLVSFS-IGQKYKD 445
Query: 456 NLIC--LPLKGLDVIIGMDWLSHHHVLLDC-AN-----------KVVIFP----DAGLAE 497
N+ C + + +++G W H L D AN K+V P D G +
Sbjct: 446 NVWCDVISMDACHMLLGRPWQYDRHALYDGHANTYTFVKYGVKIKLVPLPPNAFDEGKKD 625
Query: 498 F--LNSYFSKLSLRKGALSSLMSTTVVEAKENGVHGIA-----VVQDFEDVFPEDVP-GI 549
F + S SK + + ++ K N I ++ DF DV P ++P G+
Sbjct: 626 FKPIVSLVSKEPFKVTTKDIQDMSLILLVKSNEESTIQKEVEHLLVDFTDVVPSEIPSGL 805
Query: 550 PPVRDMEFTIDIVPG 564
PP+RD++ ID +PG
Sbjct: 806 PPMRDIQHAIDFIPG 850
>TC82733 similar to GP|10177404|dbj|BAB10535.
gene_id:K24M7.12~pir||S42136~similar to unknown protein
{Arabidopsis thaliana}, partial (57%)
Length = 710
Score = 35.4 bits (80), Expect = 0.10
Identities = 17/51 (33%), Positives = 22/51 (42%), Gaps = 5/51 (9%)
Frame = +3
Query: 311 CFRCNKKGHYANHC-----SESLAACWNCNKPGHTAAECRIPKVEAAANVA 356
C RC ++GH A +C E +NC GH+ A C P E A
Sbjct: 357 CLRCRRRGHRAQNCPDGGSKEDFKY*YNCGDNGHSLANCPHPLQEGGTMFA 509
>BG644717
Length = 267
Score = 27.7 bits (60), Expect(2) = 0.57
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 141 ECFRGAFLDKYFPRSARAAK 160
+CF FLD YFP + R AK
Sbjct: 66 DCFSETFLDNYFPINLREAK 7
Score = 23.9 bits (50), Expect(2) = 0.57
Identities = 12/41 (29%), Positives = 21/41 (50%)
Frame = -2
Query: 76 PKFSGGFDPEEADLWLKELEKIFTFLRTTAEMKVDYETYLL 116
P+F G E+ +L E++KIF + + V+ +Y L
Sbjct: 260 PEFLGSQINEDPQNFLDEIKKIFEVMHVSGNDLVELASYQL 138
>TC92636 homologue to GP|15042313|gb|AAK82093.1 232R {Chilo iridescent
virus}, partial (1%)
Length = 772
Score = 32.7 bits (73), Expect = 0.66
Identities = 18/76 (23%), Positives = 35/76 (45%)
Frame = +3
Query: 25 REEAEAQRAATAALVAAQNQAEENARRVQREERELAAAQTRGLNDFKRQDPPKFSGGFDP 84
+E E A A L A + + +++ R + + + L + + D P F G P
Sbjct: 285 QELQETVNAQQAILEAERRRVDDDGSSDSSSSRSSRSHRRKTLMNDIKVDIPDFEGELQP 464
Query: 85 EEADLWLKELEKIFTF 100
+E WL+ +E++F +
Sbjct: 465 DEFVDWLQAIERVFEY 512
>TC78961 similar to GP|18252179|gb|AAL61922.1 unknown protein {Arabidopsis
thaliana}, partial (71%)
Length = 974
Score = 31.6 bits (70), Expect = 1.5
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = +2
Query: 311 CFRCNKKGHYANHC--SESLAACWNCNKPGHTAAECR 345
CF C GH+A C + C+ C + GH C+
Sbjct: 359 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCK 469
>TC90680 similar to GP|12836314|dbj|BAB23601. data source:SPTR source
key:Q9H0W3 evidence:ISS~homolog to HYPOTHETICAL 64.6
KDA PROTEIN~putative, partial (5%)
Length = 1280
Score = 30.4 bits (67), Expect = 3.3
Identities = 10/22 (45%), Positives = 13/22 (58%)
Frame = +2
Query: 325 SESLAACWNCNKPGHTAAECRI 346
S S CW C +PGH A +C +
Sbjct: 959 SLSTYECWKCQRPGHLAEDCLV 1024
>TC87868 similar to PIR|T05112|T05112 splicing factor 9G8-like SR protein
RSZp22 [validated] - Arabidopsis thaliana, partial (91%)
Length = 860
Score = 30.4 bits (67), Expect = 3.3
Identities = 19/52 (36%), Positives = 22/52 (41%), Gaps = 10/52 (19%)
Frame = +3
Query: 331 CWNCNKPGHTAAECRIPKVEAAANVAGARR----------PTAGGRVYSISG 372
C+ C +PGH A ECR AG RR P+ G R YS G
Sbjct: 336 CYECGEPGHFARECR----NRGGGGAGRRRSRSPPRFRRSPSYGRRSYSPRG 479
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.321 0.137 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,096,406
Number of Sequences: 36976
Number of extensions: 372281
Number of successful extensions: 1775
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 1725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1762
length of query: 929
length of database: 9,014,727
effective HSP length: 105
effective length of query: 824
effective length of database: 5,132,247
effective search space: 4228971528
effective search space used: 4228971528
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0004b.4