TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0004a.8
         (1041 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC83661 similar to PIR|E86410|E86410 protein F3M18.14 [imported]...    74  2e-13
TC89226 weakly similar to GP|9759519|dbj|BAB10985.1 gb|AAF16763....    60  3e-09
TC90840 similar to PIR|E86410|E86410 protein F3M18.14 [imported]...    60  3e-09
BE204956 similar to PIR|E86410|E86 protein F3M18.14 [imported] -...    60  4e-09
BG644470 weakly similar to GP|9759519|dbj gb|AAF16763.1~gene_id:...    47  3e-05
TC89427 weakly similar to GP|4557063|gb|AAD22502.1| expressed pr...    33  0.74
BQ138045                                                               31  2.8
TC83420 weakly similar to GP|5903055|gb|AAD55614.1| May be a pse...    31  2.8
TC78520 similar to PIR|T47637|T47637 hypothetical protein T5N23....    30  3.7
TC77587 weakly similar to PIR|D96538|D96538 cytosolic tRNA-Ala s...    30  4.8
TC79551 similar to GP|19347818|gb|AAL86322.1 unknown protein {Ar...    30  4.8
TC76659 weakly similar to PIR|T09127|T09127 probable erythrocyte...    30  6.3
TC90581 similar to PIR|E86357|E86357 alcohol dehydrogenase homol...    30  6.3
TC77681 similar to GP|22597156|gb|AAN03465.1 nucleolar histone d...    29  8.2

>TC83661 similar to PIR|E86410|E86410 protein F3M18.14 [imported] -
           Arabidopsis thaliana, partial (12%)
          Length = 987

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 57/212 (26%), Positives = 94/212 (43%), Gaps = 36/212 (16%)
 Frame = +1

Query: 223 RNQSLKEKCELSLDSEISEEGVDRISMLIDDEELELRELQERTNLLICSDHLAASGMLGC 282
           R +  +E+ + +L+   + +       LI+DE+LE+ EL   +  L     L    +   
Sbjct: 16  RKEKEEERRKAALEKATARKIAKESLELIEDEQLEMMELAASSKGLSSIIRLDFDTLQNI 195

Query: 283 SLGKDVLVKYPPDTVKMKKPIHLQPWDSSPELVKKLFK---------------------- 320
              +D L  +PP++VK++KP  +QPW +S + V  L                        
Sbjct: 196 ESFRDSLCLFPPESVKLRKPFAIQPWINSEDNVGNLLMVWRFLITFADVLELWPFTLDEF 375

Query: 321 -------DSMLLGKIHVALLTLLLSDIEVELSN---GFAPHLDKSCNFLALLHSVESQEY 370
                  DS LLG+IHVALL +++ DIE        G   + + + N       +    Y
Sbjct: 376 VQAFHDYDSRLLGEIHVALLKVIIKDIEDVARTPCTGLGMNQNGAANSGGGHPEIVEGAY 555

Query: 371 SPDF----WRRSLNSLTWIEILRQVLVASGFG 398
           +  F    W + LN LTW EI RQ+ +++G+G
Sbjct: 556 AWGFDIRNWHKHLNQLTWPEIFRQLALSAGYG 651


>TC89226 weakly similar to GP|9759519|dbj|BAB10985.1
           gb|AAF16763.1~gene_id:MLN1.10~strong similarity to
           unknown protein {Arabidopsis thaliana}, partial (5%)
          Length = 1822

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 48/187 (25%), Positives = 88/187 (46%), Gaps = 11/187 (5%)
 Frame = +2

Query: 741 LLSVLDDRGKREA------LLIESLERRQTSLCRFMSRVKVNGIGTGCMSHSDQSELDMV 794
           LL+ LD RG RE+      L IE++ +      +     K+      C+ + +  E D  
Sbjct: 11  LLNSLDSRGIRESHLRLMLLKIENIFKENVQ--KNAKCAKIGNTDEICVKN-EAEETDSS 181

Query: 795 TED---SNSPVSDVDNLNLSDSAKSLPSAGAVVIEAGKGVEEQVQKWIRVQEYDSWIWNS 851
            +    S+SP S +  L+ SD++++   + +  IE GK   ++     R Q++  W+W  
Sbjct: 182 PDHHTRSDSPSSTLCGLS-SDTSET---SASFTIELGKSESDKKASLRRYQDFQKWMWKE 349

Query: 852 FYLD--LNVVKYGRRSYLDSLARCKSCHDLYWRDERHCKICHMTFELDFDLEERYAIHIA 909
            Y    L  +KYG++     +  C  C +LY  ++ HC  CH+TF  +   +  ++ H+ 
Sbjct: 350 CYNPSILCAMKYGKKRCKPQVDICDICLNLYCLEDSHCSYCHLTFPSNDGFD--FSKHVI 523

Query: 910 TCREKEN 916
            C +K +
Sbjct: 524 QCGDKSS 544


>TC90840 similar to PIR|E86410|E86410 protein F3M18.14 [imported] -
           Arabidopsis thaliana, partial (4%)
          Length = 716

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 43/117 (36%), Positives = 60/117 (50%), Gaps = 5/117 (4%)
 Frame = +3

Query: 493 STVTKDDDECQ----SDMEDYGSVDDELDDSDTCSCGDDFESGSVDSNIRKLKRVKSHKT 548
           STV K  + C     S  E+ G  D EL D          ++GS +++    + V     
Sbjct: 45  STVNKTSEPCNDFSSSGKENLGH-DGELKDGFDKDLPGFPDNGSKNADCPSGQPVACESL 221

Query: 549 KSAKLTVFN-EIDESHPGEVWLLGLMESEYSDLNIEEKLNALAALTDLLSSGSSIRM 604
            +  L   N E+DES  GE W+ GL E EYSDL++EE+LNAL  L  L + G+ IR+
Sbjct: 222 IARNLGEDNIEVDESKSGESWIQGLTEGEYSDLSVEERLNALVVLVGLANEGNLIRV 392


>BE204956 similar to PIR|E86410|E86 protein F3M18.14 [imported] - Arabidopsis
           thaliana, partial (3%)
          Length = 485

 Score = 60.1 bits (144), Expect = 4e-09
 Identities = 28/47 (59%), Positives = 36/47 (76%)
 Frame = +1

Query: 558 EIDESHPGEVWLLGLMESEYSDLNIEEKLNALAALTDLLSSGSSIRM 604
           EIDES  GE W+ GL E EYSDL++EE+LNAL AL  + + G+SIR+
Sbjct: 43  EIDESKSGEPWVQGLTEGEYSDLSVEERLNALVALVGVANEGNSIRI 183


>BG644470 weakly similar to GP|9759519|dbj gb|AAF16763.1~gene_id:MLN1.10~strong
            similarity to unknown protein {Arabidopsis thaliana},
            partial (4%)
          Length = 814

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 44/170 (25%), Positives = 75/170 (43%), Gaps = 16/170 (9%)
 Frame = +3

Query: 876  CHDLYWRDERHCKICHMTFELDFDLEERYAIHIATCREKENSKTHPNHKVLSSQIQSLKA 935
            C D Y+ ++ HC  CH TF    + E   + H   C     SK    H  L  + + LK 
Sbjct: 3    CLDPYFMEDSHCNSCHQTF--PSNNEFNISKHTFQC-VGNLSKDIMEHS-LPLRTRLLKV 170

Query: 936  AIYAIESVMPEDSLVGAWRKSAHKLWVKRLRRTSTLVELVQVLTDFVGAINESWL-FQCK 994
             +  +E+ +  ++    W     K W  +L ++ST+ EL+Q+LT F  A+   +L     
Sbjct: 171  LLSCMEASVLSEAFGTIWTTDFRKHWGVKLNKSSTVEELLQMLTLFEKALRRDFLSSNFS 350

Query: 995  FPDGMV---------------EEIIASFASMPHTSSALALWLVKLDTIIA 1029
              D ++                E +A    +P T++AL+L L + D+ I+
Sbjct: 351  TTDELLGLSSMSKSAAHVSADPESVALLPWVPLTTAALSLRLFEFDSSIS 500


>TC89427 weakly similar to GP|4557063|gb|AAD22502.1| expressed protein
           {Arabidopsis thaliana}, partial (50%)
          Length = 753

 Score = 32.7 bits (73), Expect = 0.74
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 11/105 (10%)
 Frame = +1

Query: 434 LSERGNNGCKVSDLAKATQIAELNLASTTEELESLICSTLSSDITLFEKISSSAYRLRMS 493
           L+ R NN   VS  A+A  +   +L +T + L  L+ +T S    +   IS    R  + 
Sbjct: 82  LAFRNNNTISVSSFAEALILQ--SLIATAKSLAYLLIATGSLLTDVNHLISPMDGRFPLD 255

Query: 494 TVTKDDDECQS-----------DMEDYGSVDDELDDSDTCSCGDD 527
            ++K +  C+            D +D   V+DE DD+D    GD+
Sbjct: 256 QLSKGNHTCEENKDGSETEDDDDEDDDDDVNDEDDDNDEDFSGDE 390


>BQ138045 
          Length = 710

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 24/82 (29%), Positives = 37/82 (44%), Gaps = 7/82 (8%)
 Frame = +1

Query: 745 LDDRGKREALLIESLERRQTSLCRFMSRVKVNGIGTGCMSHSDQ-------SELDMVTED 797
           L D+ K E L     ERR+      + + K+ G  TG M    +       S+ DM TED
Sbjct: 382 LGDKSK-EKLTGNKYERRKRLNKSPICQTKMTGELTGPMMPDSKETPMRXFSDFDMXTED 558

Query: 798 SNSPVSDVDNLNLSDSAKSLPS 819
            +S    V N+++ D+    P+
Sbjct: 559 ESSACXQVXNVHIGDTVXETPA 624


>TC83420 weakly similar to GP|5903055|gb|AAD55614.1| May be a pseudogene of
           F6D8.29. {Arabidopsis thaliana}, partial (10%)
          Length = 1210

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 22/82 (26%), Positives = 37/82 (44%), Gaps = 7/82 (8%)
 Frame = -3

Query: 127 MNASVKKHGIGKGLMTIWRATNPDS-------GELPVGFGFADREVHLISNSKKSVRENN 179
           +N S  + G+GK  +T++   +P+S       G LP       R  H+ S+S   +    
Sbjct: 389 INESFSRRGVGKSNLTLFSNFSPESVYSEVW*GRLP---SICFRRTHVFSSSSSCL---- 231

Query: 180 RSSKTATMNRMLKNKLQNKRNN 201
             SK    N  +K +  NKR++
Sbjct: 230 -DSKKLVRNMFMKIEFWNKRDH 168


>TC78520 similar to PIR|T47637|T47637 hypothetical protein T5N23.140 -
            Arabidopsis thaliana, partial (71%)
          Length = 2748

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = +1

Query: 194  KLQNKRNNLQDKRKLLMQRKAGESNQHVTRNQSLKEKCELSLDSEISEEGVDRISMLIDD 253
            ++  +RN LQ    +   R A E    +     + E C   L   +S +  DR+ + +D 
Sbjct: 1861 EVDRQRNRLQAAEAMAHARTAAEKGD-LAGAVFILENCRKMLSETVSAKSHDRLCVALD- 2034

Query: 254  EELELRELQER 264
               EL+E+QER
Sbjct: 2035 --AELKEMQER 2061


>TC77587 weakly similar to PIR|D96538|D96538 cytosolic tRNA-Ala synthetase
           [imported] - Arabidopsis thaliana, partial (21%)
          Length = 1024

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
 Frame = +1

Query: 907 HIATCREKENSKTHPNHKVLS--SQIQSL-----KAAIYAIESVMPEDSLVGAWRKSAHK 959
           H A    +E SKT P  KVLS  S +++L     K A   IE V+P+D +  A +  A +
Sbjct: 187 HRAMKAARERSKTAPKKKVLSLKSNVETLSIPAAKKAENKIEIVLPQDQMRKAQKHVAEE 366

Query: 960 LWVKRLRRTSTLVEL 974
              K ++ T+   +L
Sbjct: 367 DKRKAVKITTEKADL 411


>TC79551 similar to GP|19347818|gb|AAL86322.1 unknown protein {Arabidopsis
           thaliana}, partial (54%)
          Length = 1704

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 21/68 (30%), Positives = 32/68 (46%), Gaps = 9/68 (13%)
 Frame = +3

Query: 59  CLQDLGTVLRNDGPSIGREFD------YLPSGHKSYNSTCREDQQPAKR---SKVSKGTG 109
           C + +G V   D  S+G +        Y  SGH +  S+C +D    +R   SK  K  G
Sbjct: 495 CFKRIGEVAGTDKGSLGEKTSKGNTQMYAGSGHSTS*SSCSKDPNGVRRKASSKSQKCYG 674

Query: 110 KGLMNASV 117
           K L+ A++
Sbjct: 675 K*LVQANI 698


>TC76659 weakly similar to PIR|T09127|T09127 probable erythrocyte-binding
           protein MAEBL - Plasmodium yoelii, partial (2%)
          Length = 843

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 13/29 (44%), Positives = 18/29 (61%)
 Frame = +3

Query: 94  EDQQPAKRSKVSKGTGKGLMNASVKKHGI 122
           E+ Q  K S+  +G GKGLMN S  + G+
Sbjct: 690 EESQEGKESRGGRGKGKGLMNISRIREGL 776


>TC90581 similar to PIR|E86357|E86357 alcohol dehydrogenase homolog
           [imported] - Arabidopsis thaliana, partial (52%)
          Length = 1289

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 25/101 (24%), Positives = 42/101 (40%), Gaps = 6/101 (5%)
 Frame = +1

Query: 442 CKVSDLAKATQIAELNLASTTEELESLICSTLSSDITLFEKISSSAYRLRMSTVTKDDDE 501
           CK S      +  EL+   + E    ++C++L      F K++SSA   R   +     E
Sbjct: 307 CKKSGEPLVIEEVELDPPKSWEVRIKILCTSLCHSDVTFWKMNSSAPTARFPRIL--GHE 480

Query: 502 CQSDMEDYGSVDDELDDSDTC------SCGDDFESGSVDSN 536
               +E  G   +E+ + D        +CG+  + GS  SN
Sbjct: 481 AVGLVESVGENVEEVKEGDLVVPVFLPNCGECIDCGSTKSN 603


>TC77681 similar to GP|22597156|gb|AAN03465.1 nucleolar histone deacetylase
           HD2-P39 {Glycine max}, partial (47%)
          Length = 1233

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +2

Query: 498 DDDECQSDMEDYGSVDDELD--DSDTCSCGDDFESGSVDSNIRKLKRVKSHKTKSAKLT 554
           DDD+   D  + GS DDE++  DSD+    D  E    ++ ++K+ + K    +SA  T
Sbjct: 581 DDDDESDD--EIGSSDDEMENADSDSEDEDDSDEDDEEETPVKKVDQGKKRPNESASKT 751


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.315    0.132    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,399,782
Number of Sequences: 36976
Number of extensions: 463781
Number of successful extensions: 2607
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 2554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2600
length of query: 1041
length of database: 9,014,727
effective HSP length: 106
effective length of query: 935
effective length of database: 5,095,271
effective search space: 4764078385
effective search space used: 4764078385
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)