BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0002.14
(340 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC80613 similar to GP|8346773|emb|CAB93939.1 AP2-domain DNA-bind... 115 2e-26
TC88292 similar to GP|8346773|emb|CAB93939.1 AP2-domain DNA-bind... 104 4e-23
TC91918 homologue to GP|9369375|gb|AAF87124.1| F10A5.29 {Arabido... 101 4e-22
TC83392 similar to PIR|T51833|T51833 transcription factor DREB2A... 100 6e-22
TC76517 similar to GP|11994632|dbj|BAB02769. AP2 domain transcri... 99 2e-21
AL366881 similar to PIR|T00399|T003 probable AP2 domain transcri... 99 2e-21
TC93662 similar to GP|10177219|dbj|BAB10294. contains similarity... 97 7e-21
TC78789 homologue to PIR|T48580|T48580 hypothetical protein T31B... 97 9e-21
AW689511 similar to GP|14140155|emb putative AP2 domain transcri... 94 6e-20
AW559374 similar to GP|17381278|gb| AT4g34410/F10M10_180 {Arabid... 93 1e-19
TC76792 similar to GP|3264767|gb|AAC24587.1| AP2 domain containi... 93 2e-19
TC76339 homologue to GP|4099914|gb|AAD00708.1| ethylene-responsi... 93 2e-19
BF650547 similar to GP|9758388|dbj| AP2 domain transcription fac... 93 2e-19
TC90274 similar to GP|10177219|dbj|BAB10294. contains similarity... 93 2e-19
TC86273 similar to SP|O80340|ERF4_ARATH Ethylene responsive elem... 92 2e-19
AJ498314 similar to GP|17381278|gb| AT4g34410/F10M10_180 {Arabid... 92 3e-19
TC86332 similar to GP|7528276|gb|AAF63205.1| AP2-related transcr... 91 6e-19
TC82756 similar to GP|17381278|gb|AAL36057.1 AT4g34410/F10M10_18... 91 6e-19
TC76795 similar to GP|18496063|emb|CAD21849. ethylene responsive... 90 1e-18
TC90918 similar to GP|18873847|gb|AAL79793.1 putative DNA bindin... 90 1e-18
>TC80613 similar to GP|8346773|emb|CAB93939.1 AP2-domain DNA-binding protein
{Catharanthus roseus}, partial (22%)
Length = 901
Score = 115 bits (288), Expect = 2e-26
Identities = 61/117 (52%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Frame = +1
Query: 60 KGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAARAYDRAAIILY 119
KGKGGP+N++ YRGVRQR+WGKWV+EIREP + +R WLGTF+TA AA AYD AA +Y
Sbjct: 304 KGKGGPENSRCNYRGVRQRTWGKWVSEIREPNRGSRLWLGTFTTAIGAALAYDEAARAMY 483
Query: 120 GSRAQLNL-QPSPTSSSSQSSSSSSRASSSSSSTQTLRPLLPRPSGYGFSFSGSHLP 175
GSRA+LN S T S +S + S A+ + ST T ++P SG G S P
Sbjct: 484 GSRARLNFPNVSVTRFSDESPNDSPDANHLAVSTNTESMIIPDNSGIGVEDSNDMEP 654
>TC88292 similar to GP|8346773|emb|CAB93939.1 AP2-domain DNA-binding protein
{Catharanthus roseus}, partial (28%)
Length = 1847
Score = 104 bits (260), Expect = 4e-23
Identities = 54/97 (55%), Positives = 66/97 (67%), Gaps = 2/97 (2%)
Frame = +1
Query: 60 KGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAARAYDRAAIILY 119
KGKGGP N++ +YRGVRQR+WGKWVAEIREP + +R WLGTF TA++AA AYD AA +Y
Sbjct: 397 KGKGGPQNSENKYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAQEAALAYDYAARAMY 576
Query: 120 GSRAQLNLQPSPTSSSSQS--SSSSSRASSSSSSTQT 154
G A+LN S Q SS+ A+S SS T
Sbjct: 577 GPSARLNFPDISDYRSIQEYLKDSSAAAASCCSSVAT 687
>TC91918 homologue to GP|9369375|gb|AAF87124.1| F10A5.29 {Arabidopsis
thaliana}, partial (38%)
Length = 1171
Score = 101 bits (252), Expect = 4e-22
Identities = 49/83 (59%), Positives = 59/83 (71%)
Frame = +2
Query: 60 KGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAARAYDRAAIILY 119
+GKGGP+N Y+GVRQR+WGKWVAEIREP + R WLGTF T+ +AA AYD AA LY
Sbjct: 89 RGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLY 268
Query: 120 GSRAQLNLQPSPTSSSSQSSSSS 142
GS A+LNL T + +SS S
Sbjct: 269 GSDAKLNLPELSTPPQNTTSSPS 337
>TC83392 similar to PIR|T51833|T51833 transcription factor DREB2A drought
induced [validated] - Arabidopsis thaliana, partial
(22%)
Length = 742
Score = 100 bits (250), Expect = 6e-22
Identities = 52/103 (50%), Positives = 61/103 (58%), Gaps = 7/103 (6%)
Frame = +3
Query: 60 KGKGGPDNNKFRYRGVRQRSWGKWVAEIREP-------RKRTRKWLGTFSTAEDAARAYD 112
+GKGGP N+ +RGVRQR WGKWVAEIREP K R WLGTF+TA DAA AYD
Sbjct: 213 RGKGGPQNSDCNFRGVRQRMWGKWVAEIREPINGKHVGEKANRLWLGTFTTAHDAALAYD 392
Query: 113 RAAIILYGSRAQLNLQPSPTSSSSQSSSSSSRASSSSSSTQTL 155
+AA +YG A+LN SSSS S+ S + L
Sbjct: 393 KAAKAMYGPSARLNFPDGSPSSSSGGSADSMNGEEDLGKAEEL 521
>TC76517 similar to GP|11994632|dbj|BAB02769. AP2 domain transcription
factor RAP2.3 {Arabidopsis thaliana}, partial (33%)
Length = 1290
Score = 99.0 bits (245), Expect = 2e-21
Identities = 62/144 (43%), Positives = 81/144 (56%), Gaps = 12/144 (8%)
Frame = +3
Query: 20 ATAAITTTPSETS----NSENSNSSHN-----NNITTPNTSTTINNRKCKGKGGPDNNKF 70
A AA TPS + E SS N +N+ + T+ K K GG K
Sbjct: 396 AAAAAFNTPSSKELPPLSFEKFFSSDNKVVSCDNVEKKQSLVTVEKGK-KSTGGKRARKN 572
Query: 71 RYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAARAYDRAAIILYGSRAQLNLQPS 130
YRG+RQR WGKW AEIR+P++ R WLGTFSTAE+AARAYD AA + G +A+LN +
Sbjct: 573 VYRGIRQRPWGKWAAEIRDPQQGVRVWLGTFSTAEEAARAYDTAAKRIRGDKAKLNFPDT 752
Query: 131 PTSSSSQSSS---SSSRASSSSSS 151
P ++ + SS +ASS +SS
Sbjct: 753 PAVTAPPAKKQCVSSDQASSQASS 824
>AL366881 similar to PIR|T00399|T003 probable AP2 domain transcription factor
[imported] - Arabidopsis thaliana, partial (26%)
Length = 477
Score = 99.0 bits (245), Expect = 2e-21
Identities = 52/118 (44%), Positives = 76/118 (64%), Gaps = 7/118 (5%)
Frame = +1
Query: 25 TTTPSETSNSENSNSSHNNNITTPNTSTTINNRKCKGKGGPDNNKF-RYRGVRQRSWGKW 83
+++ + TS++ NSNS+ + N+ T N N + K + ++ K YRGVR R+WGKW
Sbjct: 112 SSSSTPTSSNSNSNSNSSTNLETKNNPQNGNKKSKKRERNENDTKHPTYRGVRMRAWGKW 291
Query: 84 VAEIREPRKRTRKWLGTFSTAEDAARAYDRAAIILYGSRAQLNLQ------PSPTSSS 135
V+EIREPRK++R WLGT+ TAE AARA+D AA+ + G A LN P P+++S
Sbjct: 292 VSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPNLAQNLPRPSTTS 465
>TC93662 similar to GP|10177219|dbj|BAB10294. contains similarity to AP2
domain transcription factor~gene_id:MPF21.9 {Arabidopsis
thaliana}, partial (31%)
Length = 555
Score = 97.4 bits (241), Expect = 7e-21
Identities = 53/132 (40%), Positives = 76/132 (57%)
Frame = +3
Query: 30 ETSNSENSNSSHNNNITTPNTSTTINNRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIRE 89
E + +E + SS +N + ++T N + + RYRGVRQR WGKW AEIR+
Sbjct: 150 EKTVAEATTSSTSNTTQSSEAASTTNEEET------GERRRRYRGVRQRPWGKWAAEIRD 311
Query: 90 PRKRTRKWLGTFSTAEDAARAYDRAAIILYGSRAQLNLQPSPTSSSSQSSSSSSRASSSS 149
P K R WLGTF TAE AARAYD AA+ G+RA+LN + +S+++ + + ++SS
Sbjct: 312 PHKAARVWLGTFETAEAAARAYDEAALRFRGNRAKLNFPENVPASATRPTFPVNTSTSSV 491
Query: 150 SSTQTLRPLLPR 161
S P P+
Sbjct: 492 SPATHYSPAPPQ 527
>TC78789 homologue to PIR|T48580|T48580 hypothetical protein T31B5.150 -
Arabidopsis thaliana, partial (33%)
Length = 1112
Score = 97.1 bits (240), Expect = 9e-21
Identities = 51/116 (43%), Positives = 70/116 (59%), Gaps = 4/116 (3%)
Frame = +1
Query: 37 SNSSHNNNITTPNTSTTINNRKCKGK----GGPDNNKFRYRGVRQRSWGKWVAEIREPRK 92
S+++HNN + STT+ N + + K YRGVRQR WGKW AEIR+P+K
Sbjct: 241 SSTNHNNPQMAQSISTTMVNEESQPPQPLLDQETKKKPHYRGVRQRPWGKWAAEIRDPKK 420
Query: 93 RTRKWLGTFSTAEDAARAYDRAAIILYGSRAQLNLQPSPTSSSSQSSSSSSRASSS 148
R WLGTF TAEDAA AYD+AA+ G++A+LN +S SS++++ S
Sbjct: 421 AARVWLGTFDTAEDAALAYDKAALKFKGTKAKLNFPERVVQCNSYSSTANNAIQQS 588
>AW689511 similar to GP|14140155|emb putative AP2 domain transcription factor
{Oryza sativa}, partial (32%)
Length = 703
Score = 94.4 bits (233), Expect = 6e-20
Identities = 60/168 (35%), Positives = 86/168 (50%), Gaps = 35/168 (20%)
Frame = +1
Query: 16 TKPTATAAITTTPSETSN------SENSNSSHNNNITTPNTSTTINNRKCKGKGGP---- 65
T P + ++ P+ SN NSN HNNN T T +T + + P
Sbjct: 22 TSPYSNFSLFAPPTTFSNLFHKHSHSNSNYHHNNNSLTTMTQSTTTSSTSSQESPPTHSI 201
Query: 66 ------------------DNNKF-RYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAED 106
+NNK Y GVR+R+WGKWV+EIREPRK++R WLGTFST E
Sbjct: 202 QKQSPTRPKRPRDDDNNDNNNKHPTYHGVRKRNWGKWVSEIREPRKKSRIWLGTFSTPEM 381
Query: 107 AARAYDRAAIILYGSRAQL------NLQPSPTSSSSQSSSSSSRASSS 148
AARA+D AA+ + G A L N+ P P +S+ + +++ A+++
Sbjct: 382 AARAHDVAALTIKGKTAILNFPHLSNMLPRPATSAPRDIQAAATAAAA 525
>AW559374 similar to GP|17381278|gb| AT4g34410/F10M10_180 {Arabidopsis
thaliana}, partial (27%)
Length = 732
Score = 93.2 bits (230), Expect = 1e-19
Identities = 47/70 (67%), Positives = 52/70 (74%)
Frame = +3
Query: 69 KFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAARAYDRAAIILYGSRAQLNLQ 128
K +YRGVRQR WGKW AEIR+PR+ TR WLGTFSTAE+AARAYD AAI G RA+LN
Sbjct: 291 KKKYRGVRQRPWGKWAAEIRDPRRATRVWLGTFSTAEEAARAYDNAAIEFRGPRAKLNF- 467
Query: 129 PSPTSSSSQS 138
P S QS
Sbjct: 468 PMVDDSLKQS 497
>TC76792 similar to GP|3264767|gb|AAC24587.1| AP2 domain containing protein
{Prunus armeniaca}, partial (49%)
Length = 1729
Score = 92.8 bits (229), Expect = 2e-19
Identities = 47/107 (43%), Positives = 67/107 (61%), Gaps = 1/107 (0%)
Frame = +3
Query: 32 SNSENSNSSHNNNITTPNTSTTINNRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPR 91
SN N +S ++ S +N+ + K K +YRG+RQR WGKW AEIR+PR
Sbjct: 408 SNKNNKSSKSFVRGSSAAKSVALNSNQQAEKDSKRKRKNQYRGIRQRPWGKWAAEIRDPR 587
Query: 92 KRTRKWLGTFSTAEDAARAYDRAAIILYGSRAQLNL-QPSPTSSSSQ 137
K R WLGTF+TAE+AARAYD A + G++A++N + +P +SS +
Sbjct: 588 KGVRVWLGTFNTAEEAARAYDAEARRIRGNKAKVNFPEEAPVASSKR 728
Score = 27.3 bits (59), Expect = 8.7
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 124 QLNLQPSPTSSSSQSSSSSSRASSSSSSTQTLRP 157
+ ++P +++ SSSSSS +S S SS +L P
Sbjct: 409 EAKVKPLTPTNNPSSSSSSSSSSKSESSLNSLNP 308
>TC76339 homologue to GP|4099914|gb|AAD00708.1| ethylene-responsive element
binding protein homolog {Stylosanthes hamata}, partial
(37%)
Length = 1110
Score = 92.8 bits (229), Expect = 2e-19
Identities = 53/146 (36%), Positives = 75/146 (51%), Gaps = 6/146 (4%)
Frame = +2
Query: 9 HHPPQEIT------KPTATAAITTTPSETSNSENSNSSHNNNITTPNTSTTINNRKCKGK 62
HH P+ + PT+++ +T T + + S++NNN T
Sbjct: 2 HHYPRTSSYAILSSSPTSSSMVTKTKNAANLKIKKPSNNNNNAT---------------- 133
Query: 63 GGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAARAYDRAAIILYGSR 122
+ +RGVR+R WG++ AEIR+P K++R WLGTF TAE+AARAYD AA G +
Sbjct: 134 ------EIHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDNAARQFRGPK 295
Query: 123 AQLNLQPSPTSSSSQSSSSSSRASSS 148
A+ N P P+ S S SS SS
Sbjct: 296 AKTNFPPPPSDVKEDSPSQSSTVESS 373
>BF650547 similar to GP|9758388|dbj| AP2 domain transcription factor-like
{Arabidopsis thaliana}, partial (24%)
Length = 418
Score = 92.8 bits (229), Expect = 2e-19
Identities = 50/93 (53%), Positives = 61/93 (64%), Gaps = 2/93 (2%)
Frame = -1
Query: 72 YRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAARAYDRAAIILYGSRAQLNLQP-- 129
YRGVRQR WGKW AEIR+P+K R WLGTF TAE AA AYD AA+ G++A+LN
Sbjct: 385 YRGVRQRPWGKWAAEIRDPKKGARVWLGTFETAEAAATAYDEAALRFKGNKAKLNFPRLI 206
Query: 130 SPTSSSSQSSSSSSRASSSSSSTQTLRPLLPRP 162
S S + + + ASSSSSS+ L P P+P
Sbjct: 205 SNLPSDPKPPRNKNNASSSSSSSSQLAP--PKP 113
>TC90274 similar to GP|10177219|dbj|BAB10294. contains similarity to AP2
domain transcription factor~gene_id:MPF21.9 {Arabidopsis
thaliana}, partial (32%)
Length = 750
Score = 92.8 bits (229), Expect = 2e-19
Identities = 50/101 (49%), Positives = 65/101 (63%), Gaps = 7/101 (6%)
Frame = +3
Query: 69 KFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAARAYDRAAIILYGSRAQLNL- 127
K +YRGVRQR WGKW AEIR+P K R WLGTF TAE AARAYD AA+ G++A+LN
Sbjct: 156 KRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFP 335
Query: 128 ------QPSPTSSSSQSSSSSSRASSSSSSTQTLRPLLPRP 162
P P ++++Q + S+S +S S +T T + RP
Sbjct: 336 ENVTLRNPPPATTTTQWNVSNSPSSIVSITTSTDPVVHTRP 458
>TC86273 similar to SP|O80340|ERF4_ARATH Ethylene responsive element binding
factor 4 (AtERF4). [Mouse-ear cress] {Arabidopsis
thaliana}, partial (43%)
Length = 1171
Score = 92.4 bits (228), Expect = 2e-19
Identities = 54/123 (43%), Positives = 70/123 (56%)
Frame = +3
Query: 69 KFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAARAYDRAAIILYGSRAQLNLQ 128
+ RYRGVR+R WG++ AEIR+P K+TR WLGTF TAE+AARAYD+AA GS+A+ N
Sbjct: 171 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDKAAREFRGSKAKTNF- 347
Query: 129 PSPTSSSSQSSSSSSRASSSSSSTQTLRPLLPRPSGYGFSFSGSHLPVVFSAAASGPFGF 188
P+P + S S S S S L P FS SH V + + P F
Sbjct: 348 PTPLEIINNGSPSQSSTLESPSPPPLDLTLTP--------FSSSHGGVTLAYPVARPVLF 503
Query: 189 YNA 191
++A
Sbjct: 504 FDA 512
>AJ498314 similar to GP|17381278|gb| AT4g34410/F10M10_180 {Arabidopsis
thaliana}, partial (22%)
Length = 651
Score = 92.0 bits (227), Expect = 3e-19
Identities = 49/101 (48%), Positives = 64/101 (62%), Gaps = 5/101 (4%)
Frame = +3
Query: 31 TSNSENSNSSHNNNITTPNTSTTINNRKCKG-----KGGPDNNKFRYRGVRQRSWGKWVA 85
TS+S + N P+T C G + NK +YRGVRQR+WGKWVA
Sbjct: 306 TSSSASGTLLSYQNQYDPDTCRVCKINGCLGCRLFFEKDKGENKKKYRGVRQRAWGKWVA 485
Query: 86 EIREPRKRTRKWLGTFSTAEDAARAYDRAAIILYGSRAQLN 126
EIR+P++ TR LGTF TAE+AARAYD+AAI +G+RA++N
Sbjct: 486 EIRDPKRATRV*LGTFQTAENAARAYDQAAIKFHGARAKIN 608
>TC86332 similar to GP|7528276|gb|AAF63205.1| AP2-related transcription
factor {Mesembryanthemum crystallinum}, partial (49%)
Length = 1349
Score = 90.9 bits (224), Expect = 6e-19
Identities = 56/121 (46%), Positives = 68/121 (55%), Gaps = 8/121 (6%)
Frame = +1
Query: 62 KGGPDNNKFRYRGVRQRSWGKWVAEIREPRKR-TRKWLGTFSTAEDAARAYDRAAIILYG 120
K P K YRGVRQR WGK+ AEIR+P K R WLGTF TAEDAA AYDRAA + G
Sbjct: 514 KAAPVKGK-HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRG 690
Query: 121 SRAQLNL-------QPSPTSSSSQSSSSSSRASSSSSSTQTLRPLLPRPSGYGFSFSGSH 173
SRA LN +P P +S+ SS +SS S+S + ++ SG GS
Sbjct: 691 SRALLNFPLRVNSGEPDPVRIASKRSSPERSSSSESNSPAKRKKVMTAQSGLKTGQVGSQ 870
Query: 174 L 174
+
Sbjct: 871 V 873
>TC82756 similar to GP|17381278|gb|AAL36057.1 AT4g34410/F10M10_180
{Arabidopsis thaliana}, partial (35%)
Length = 630
Score = 90.9 bits (224), Expect = 6e-19
Identities = 44/61 (72%), Positives = 49/61 (80%)
Frame = +3
Query: 67 NNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAARAYDRAAIILYGSRAQLN 126
NNK YRGVRQR WGKW AEIR+PR+ R WLGTF+TAE+AARAYD AAI G RA+LN
Sbjct: 255 NNK--YRGVRQRPWGKWAAEIRDPRRAVRVWLGTFTTAEEAARAYDNAAIEFRGPRAKLN 428
Query: 127 L 127
L
Sbjct: 429 L 431
>TC76795 similar to GP|18496063|emb|CAD21849. ethylene responsive element
binding protein {Fagus sylvatica}, partial (32%)
Length = 966
Score = 90.1 bits (222), Expect = 1e-18
Identities = 72/244 (29%), Positives = 111/244 (44%), Gaps = 12/244 (4%)
Frame = +3
Query: 36 NSNSSHNNNITTPNTSTTINNRKCKGKGGPD---NNKFRYRGVRQRSWGKWVAEIREPRK 92
++N+ +N+ +++ + K +G + K +YRG+RQR WGKW AEIR+PRK
Sbjct: 249 STNNKSSNSFVRGSSAAKVVASKSNEQGEKELKRKRKNQYRGIRQRPWGKWAAEIRDPRK 428
Query: 93 RTRKWLGTFSTAEDAARAYDRAAIILYGSRAQLNLQPSPTSSSSQSSSSSSRASSSSSST 152
R WLGTF+TAE+AARAYD A + G +A++N ++ ++SS+ ++S T
Sbjct: 429 GVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNF-------PEEAPNASSKRLKTNSET 587
Query: 153 QTLRPLLPR------PSGYGFSFSGSHLPVVFSAAAS-GPFGFYNANNGYMQLQPQQHHF 205
Q L L + Y P+V + A+ GPF A NG +
Sbjct: 588 QLLDKNLNSFKCENIENYYSPVNQVEQRPLVNAQCANVGPF----AGNGVQLASSDVTAY 755
Query: 206 HHQEVVQSQLQ-PQLQQCRQ-PEPDVKGGGVVDHVRSTSYQNQHSHHHQDQVVMQNYPVL 263
E + P L Q P+ + S +N S + QD + MQN
Sbjct: 756 FSSEYSSNSFDYPDLCWGEQGPKTPEISSVFSAPIEGESQKNLQSDNSQDMLPMQNDSAK 935
Query: 264 NHQQ 267
H +
Sbjct: 936 THSE 947
>TC90918 similar to GP|18873847|gb|AAL79793.1 putative DNA binding protein
{Oryza sativa}, partial (29%)
Length = 512
Score = 89.7 bits (221), Expect = 1e-18
Identities = 53/131 (40%), Positives = 72/131 (54%), Gaps = 3/131 (2%)
Frame = +1
Query: 17 KPTATAAITTTPSETSNSENSNSSHNNNITTPNTSTTINNRKCKG---KGGPDNNKFRYR 73
+PT + + S +SNS +S NT +K G K N YR
Sbjct: 91 QPTTSLSSYIIASTSSNSSSSLEEEEEEEEATNTKCKEKKKKKVGMVNKVNDRKNNPTYR 270
Query: 74 GVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAARAYDRAAIILYGSRAQLNLQPSPTS 133
GVR R WGKWV+EIREPRK++R WLGTF T + AARA+D AA+ + GS A LN P +
Sbjct: 271 GVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDVAALTIKGSSAYLNF-PELAA 447
Query: 134 SSSQSSSSSSR 144
+++S+S +
Sbjct: 448 VLPRAASASPK 480
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.312 0.127 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,910,949
Number of Sequences: 36976
Number of extensions: 273920
Number of successful extensions: 7483
Number of sequences better than 10.0: 402
Number of HSP's better than 10.0 without gapping: 3820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5489
length of query: 340
length of database: 9,014,727
effective HSP length: 97
effective length of query: 243
effective length of database: 5,428,055
effective search space: 1319017365
effective search space used: 1319017365
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0002.14