TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0627.15
         (557 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC17402 weakly similar to UP|O23240 (O23240) Actin interacting p...   311  2e-85
TC18352 similar to UP|O23240 (O23240) Actin interacting protein,...   201  2e-52
TC19258 weakly similar to GB|AAG30907.1|11120512|AF303980 cytoki...    37  0.011
TC11163 similar to UP|Q94AX4 (Q94AX4) AT5g06580/F15M7_11, partia...    37  0.011
AI967550                                                               34  0.071
TC17362 similar to UP|Q942K4 (Q942K4) OJ1111_G12.11 protein, par...    30  0.79
TC8296 similar to GB|AAN28790.1|23505861|AY143851 At5g64200/MSJ1...    28  3.0
TC17796 similar to PIR|T10625|T10625 reticuline oxidase homolog ...    28  3.0
AV425475                                                               28  3.9
TC10684                                                                28  5.1
TC15594 similar to UP|CYTI_VIGUN (Q06445) Cysteine proteinase in...    27  6.7

>TC17402 weakly similar to UP|O23240 (O23240) Actin interacting protein,
           partial (12%)
          Length = 494

 Score =  311 bits (796), Expect = 2e-85
 Identities = 147/147 (100%), Positives = 147/147 (100%)
 Frame = +3

Query: 1   MNRNTRATLRLLTPFFNPRRNPSLLPSTPHFDENWWHSQTNIAHGEHRVSSLFNPLRFSV 60
           MNRNTRATLRLLTPFFNPRRNPSLLPSTPHFDENWWHSQTNIAHGEHRVSSLFNPLRFSV
Sbjct: 54  MNRNTRATLRLLTPFFNPRRNPSLLPSTPHFDENWWHSQTNIAHGEHRVSSLFNPLRFSV 233

Query: 61  KNQQMGVGISTGIQHKCYASMPGLVQRNPRFSELNDDDVRYFQEILGQKNVVQDEEKLST 120
           KNQQMGVGISTGIQHKCYASMPGLVQRNPRFSELNDDDVRYFQEILGQKNVVQDEEKLST
Sbjct: 234 KNQQMGVGISTGIQHKCYASMPGLVQRNPRFSELNDDDVRYFQEILGQKNVVQDEEKLST 413

Query: 121 VNTDWMHKYEGSSKLLLQPWNTDQVSQ 147
           VNTDWMHKYEGSSKLLLQPWNTDQVSQ
Sbjct: 414 VNTDWMHKYEGSSKLLLQPWNTDQVSQ 494


>TC18352 similar to UP|O23240 (O23240) Actin interacting protein, partial
           (18%)
          Length = 547

 Score =  201 bits (512), Expect = 2e-52
 Identities = 98/100 (98%), Positives = 99/100 (99%)
 Frame = +2

Query: 458 GNAANVVGYGHLGDGNLHLNISVPQYDDKILSQIEPFVYEWTSKHNGSISAEHGLGLMKA 517
           GNAANVVGYGHL DGNLHLNISVPQYDDKILSQIEPFVYEWTSKHNGSISAEHGLGLMKA
Sbjct: 2   GNAANVVGYGHLADGNLHLNISVPQYDDKILSQIEPFVYEWTSKHNGSISAEHGLGLMKA 181

Query: 518 NEILYSKSLETVQLMASIKNLLDPNHILNPYKVLPHSLIA 557
           NEILYSKSLETVQLMASIK+LLDPNHILNPYKVLPHSLIA
Sbjct: 182 NEILYSKSLETVQLMASIKSLLDPNHILNPYKVLPHSLIA 301


>TC19258 weakly similar to GB|AAG30907.1|11120512|AF303980 cytokinin oxidase
           {Arabidopsis thaliana;} , partial (7%)
          Length = 417

 Score = 36.6 bits (83), Expect = 0.011
 Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
 Frame = +1

Query: 103 QEILGQKNVVQDEEKLSTVNTDWMHKYEGSSKLLLQPWNTDQVSQILKYCNSRSLA-VVP 161
           Q+I    +   D + LS  +TD+ H    +  L+L+P +   +S ++K  NSR+    + 
Sbjct: 82  QQIRPLTSFQSDPKTLSEASTDFGHIVHKTPTLVLEPSSVSDISDLIKQSNSRATPFTIA 261

Query: 162 QGGNTGLVGGSVPVFDEVIVSLSSMNKVISFDKVSGILVCEAG 204
             G+     G       V+V+++ +N+   F   SGI++   G
Sbjct: 262 ARGHAHSYLGQAMAEGGVVVNMTELNR---FRNGSGIVITCGG 381


>TC11163 similar to UP|Q94AX4 (Q94AX4) AT5g06580/F15M7_11, partial (9%)
          Length = 590

 Score = 36.6 bits (83), Expect = 0.011
 Identities = 17/49 (34%), Positives = 28/49 (56%)
 Frame = +3

Query: 504 GSISAEHGLGLMKANEILYSKSLETVQLMASIKNLLDPNHILNPYKVLP 552
           G+ +  HG+G  K   +      E ++ M  IK  LDP++I+NP K++P
Sbjct: 12  GTCTGXHGVGTGKMKYLEEELGEEALRTMKKIKAALDPHNIMNPGKLIP 158


>AI967550 
          Length = 412

 Score = 33.9 bits (76), Expect = 0.071
 Identities = 36/145 (24%), Positives = 58/145 (39%), Gaps = 4/145 (2%)
 Frame = +2

Query: 153 NSRSLAVVPQGGNTGLVGGSVPVFDE----VIVSLSSMNKVISFDKVSGILVCEAGCILE 208
           NS  + +  +GG     G S  V DE    VI+ + ++N V S D  +     E G  L 
Sbjct: 2   NSARVEIRVRGGGHSYEGTS-SVADEGTLFVIIDMMNLNHV-SVDMETETAWVEGGATLG 175

Query: 209 NIISFLDNEGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGSVLGVEAVLADGTV 268
                +     +     G+  +  +GG++     GL   +YG    +V+    V A+G +
Sbjct: 176 ETYYAISQASSVHGFSAGSSPTVGVGGHIGGGGVGLMSRKYGLAADNVVDALLVDANGQL 355

Query: 269 LDMLKTLRKDNTGYDLKHLFIGSEG 293
           LD      K+  G D+     G  G
Sbjct: 356 LD------KETMGEDVFWAIRGGRG 412


>TC17362 similar to UP|Q942K4 (Q942K4) OJ1111_G12.11 protein, partial (7%)
          Length = 432

 Score = 30.4 bits (67), Expect = 0.79
 Identities = 14/23 (60%), Positives = 16/23 (68%)
 Frame = -3

Query: 533 ASIKNLLDPNHILNPYKVLPHSL 555
           AS+  LL PNH LNP+   PHSL
Sbjct: 409 ASLSCLLYPNHHLNPHAPSPHSL 341


>TC8296 similar to GB|AAN28790.1|23505861|AY143851 At5g64200/MSJ1_4
           {Arabidopsis thaliana;}, partial (55%)
          Length = 1276

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 24/76 (31%), Positives = 38/76 (49%)
 Frame = +3

Query: 157 LAVVPQGGNTGLVGGSVPVFDEVIVSLSSMNKVISFDKVSGILVCEAGCILENIISFLDN 216
           + ++     TG+ GG      EV++S   MN VI     +GI+V EAG  +   I+ +  
Sbjct: 462 IVMITDPAETGITGGEAAA--EVMIS---MNVVIGTVGETGIIVAEAGAAVPVWITKV-V 623

Query: 217 EGFIMPLDLGAKGSCQ 232
           EG +M + L   G+ Q
Sbjct: 624 EGGVMMMSLVEAGADQ 671


>TC17796 similar to PIR|T10625|T10625 reticuline oxidase homolog F21C20.180
           - Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (35%)
          Length = 594

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 27/116 (23%), Positives = 50/116 (42%), Gaps = 3/116 (2%)
 Frame = +1

Query: 200 VCEAGCILENIISFLDNEGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGSVLGV 259
           V +AG  L  +   +  +  +     G   +  +GG++S    G  L +YG    +V+  
Sbjct: 4   VVQAGATLGELYYGIWQKSKVHGFPAGVCPTVGVGGHISGGGYGNMLRKYGLSVDNVIDA 183

Query: 260 EAVLADGTVLDMLKTLRKDNTGYDLKHLFI-GSEGSLGIVTK--VAILTPPKLSSV 312
           + V   G +LD      + + G DL      G  GS G++    V ++  P++ +V
Sbjct: 184 QIVDVQGRILD------RKSMGEDLFWAIRGGGGGSFGVILSYTVKLVKVPEIVTV 333


>AV425475 
          Length = 344

 Score = 28.1 bits (61), Expect = 3.9
 Identities = 17/69 (24%), Positives = 31/69 (44%)
 Frame = +3

Query: 202 EAGCILENIISFLDNEGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGSVLGVEA 261
           +AG  +  +   +  +  +     G   S  +GG++   A G  + +YG    +VL    
Sbjct: 45  QAGATIGEVYYRISEKSAVHGFPAGLCTSLGVGGHIIGGAYGSMMRKYGLGADNVLDARI 224

Query: 262 VLADGTVLD 270
           V A+G +LD
Sbjct: 225 VDANGRILD 251


>TC10684 
          Length = 564

 Score = 27.7 bits (60), Expect = 5.1
 Identities = 25/108 (23%), Positives = 48/108 (44%)
 Frame = +3

Query: 109 KNVVQDEEKLSTVNTDWMHKYEGSSKLLLQPWNTDQVSQILKYCNSRSLAVVPQGGNTGL 168
           K +++ EE+L  +    M  + GS +   +  + + V+ I  Y    S A+    G+   
Sbjct: 120 KGLIRQEEELEDLKCYVMSFHPGSLQRCARLRSKEAVNLIESY----SFALFNHEGS--- 278

Query: 169 VGGSVPVFDEVIVSLSSMNKVISFDKVSGILVCEAGCILENIISFLDN 216
             GSV   DE++ S SS+ +++      G  + E    ++ +    DN
Sbjct: 279 --GSVEKDDEILTSFSSLKRLVLEAVAFGSFLWETEDYIDMLYKLKDN 416


>TC15594 similar to UP|CYTI_VIGUN (Q06445) Cysteine proteinase inhibitor
          (Cystatin), complete
          Length = 703

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 17 NPRRNPSLLPSTPH 30
          NP  NP+LLPS PH
Sbjct: 54 NPTENPNLLPSQPH 95


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,311,270
Number of Sequences: 28460
Number of extensions: 124132
Number of successful extensions: 610
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of query: 557
length of database: 4,897,600
effective HSP length: 95
effective length of query: 462
effective length of database: 2,193,900
effective search space: 1013581800
effective search space used: 1013581800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)