BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0593b.1
(208 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP048543 81 1e-16
BP042107 60 2e-10
AV766731 55 9e-09
TC19987 weakly similar to UP|Q7XJT3 (Q7XJT3) At2g17140 protein, ... 54 2e-08
BP035488 54 3e-08
AV772727 50 4e-07
AV779633 46 5e-06
CB826792 46 5e-06
AV429083 42 6e-05
AV421386 39 5e-04
BP042555 37 0.002
TC13232 37 0.003
AV421658 35 0.007
TC13348 weakly similar to UP|Q9LUJ4 (Q9LUJ4) Gb|AAF26800.1, part... 35 0.009
AV767789 32 0.10
BF177625 32 0.10
AV779144 31 0.14
AV417736 31 0.18
BP044414 31 0.18
TC10215 similar to UP|Q9LW29 (Q9LW29) Transport inhibitor respon... 30 0.30
>BP048543
Length = 547
Score = 81.3 bits (199), Expect = 1e-16
Identities = 43/105 (40%), Positives = 60/105 (56%), Gaps = 9/105 (8%)
Frame = +2
Query: 2 PSTLTLNILMNCYSHLGHMASASSVLGKFFKLGYEPDIVSLISLLKGFCINGKVLDAHEI 61
P TL IL+NC+ HLG M A SVLGK K Y+PD +L +L+KG C+NG++ A
Sbjct: 179 PDIATLTILINCFCHLGRMNYAFSVLGKILKRAYQPDTTALTTLMKGLCLNGEIRSAINF 358
Query: 62 -----ARGFHCD----QVMYETLTTDLCKSGETLLVIQMLHEIDK 97
A+GF V Y L +LC+ GET +Q+L +I++
Sbjct: 359 HDDVKAKGFQFQVDRVSVTYRFLINELCEVGETGAALQLLRQIEE 493
Score = 32.3 bits (72), Expect = 0.061
Identities = 19/79 (24%), Positives = 34/79 (42%)
Frame = +2
Query: 91 MLHEIDKPNLLICNRILDYLFKHRRLIKVLDLFSDMRNHMIFPDVCTFNIILNFFCLKSK 150
ML P + N IL L + + L + I PD+ T I++N FC +
Sbjct: 53 MLSMRPAPPITQFNNILGSLVRMNHYPTAVSLSQQLELKGIAPDIATLTILINCFCHLGR 232
Query: 151 VDMARELFDGMIECGFTPD 169
++ A + +++ + PD
Sbjct: 233 MNYAFSVLGKILKRAYQPD 289
>BP042107
Length = 515
Score = 60.5 bits (145), Expect = 2e-10
Identities = 25/52 (48%), Positives = 36/52 (69%)
Frame = +1
Query: 2 PSTLTLNILMNCYSHLGHMASASSVLGKFFKLGYEPDIVSLISLLKGFCING 53
P +T +IL+NCY HLG + SA SV+G K GY+P+ + L +L+KG C+ G
Sbjct: 355 PDIVTSSILINCYCHLGQLTSAFSVMGNILKRGYQPNTIILNTLMKGLCLKG 510
>AV766731
Length = 576
Score = 55.1 bits (131), Expect = 9e-09
Identities = 31/113 (27%), Positives = 60/113 (52%), Gaps = 4/113 (3%)
Frame = -3
Query: 70 VMYETLTTDLCKSGETLLVIQM---LHEIDKP-NLLICNRILDYLFKHRRLIKVLDLFSD 125
V +L LCK+ +++ +HE P +L+ N + D L KH L K + LF
Sbjct: 544 VKKNSLINGLCKARRISCAVELVDVMHETGPPADLITTNSLFDGLCKHHLLDKAIALFMK 365
Query: 126 MRNHMIFPDVCTFNIILNFFCLKSKVDMARELFDGMIECGFTPDVWCYHIMIN 178
+++ I P++ + +I++ C ++ +A+E+F ++ G+ +V Y +MIN
Sbjct: 364 VKDPKIQPNIPPYPVIIDGLCKVGRLKIAQEIFQVLLSEGYNLNVMTYTVMIN 206
>TC19987 weakly similar to UP|Q7XJT3 (Q7XJT3) At2g17140 protein, partial
(12%)
Length = 350
Score = 53.9 bits (128), Expect = 2e-08
Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Frame = +3
Query: 70 VMYETLTTDLCKSGETLLVIQMLHEIDK----PNLLICNRILDYLFKHRRLIKVLDLFSD 125
V Y+T CK G+ +++L ++++ L N ++ L ++ ++ L +
Sbjct: 3 VTYDTFIWKFCKEGKISSALRVLKDMERNGCSKTLQTYNSLILGLGSKGQIFEMYGLMDE 182
Query: 126 MRNHMIFPDVCTFNIILNFFCLKSKVDMARELFDGMIECGFTPDVWCYHIMI 177
MR I PD+CT+N +++ C K + A L M++ G +P++ + I+I
Sbjct: 183 MRERGICPDICTYNNVISCLCEGGKTEDATSLLHEMLDKGISPNISSFKILI 338
Score = 30.4 bits (67), Expect = 0.23
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Frame = +3
Query: 18 GHMASASSVLGKFFKLGYEPDIVSLISLLKGFCINGKVLDAHEIA-----RGFHCDQVMY 72
G ++SA VL + G + + SL+ G G++ + + + RG D Y
Sbjct: 42 GKISSALRVLKDMERNGCSKTLQTYNSLILGLGSKGQIFEMYGLMDEMRERGICPDICTY 221
Query: 73 ETLTTDLCKSGETLLVIQMLHE-IDK---PNL 100
+ + LC+ G+T +LHE +DK PN+
Sbjct: 222 NNVISCLCEGGKTEDATSLLHEMLDKGISPNI 317
Score = 25.8 bits (55), Expect = 5.7
Identities = 16/67 (23%), Positives = 30/67 (43%)
Frame = +3
Query: 112 KHRRLIKVLDLFSDMRNHMIFPDVCTFNIILNFFCLKSKVDMARELFDGMIECGFTPDVW 171
K ++ L + DM + + T+N ++ K ++ L D M E G PD+
Sbjct: 36 KEGKISSALRVLKDMERNGCSKTLQTYNSLILGLGSKGQIFEMYGLMDEMRERGICPDIC 215
Query: 172 CYHIMIN 178
Y+ +I+
Sbjct: 216 TYNNVIS 236
>BP035488
Length = 534
Score = 53.5 bits (127), Expect = 3e-08
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 11/135 (8%)
Frame = +3
Query: 38 DIVSLISLLKGFCINGKVLDAHEIARGFHC-----DQVMYETLTTDLCKSGETLLVIQML 92
DI + +L G+C+ G +A + + D Y T L K G+ +++
Sbjct: 66 DIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPDLFTYATFIKALTKKGKLGTALKLF 245
Query: 93 HEI------DKPNLLICNRILDYLFKHRRLIKVLDLFSDMRNHMIFPDVCTFNIILNFFC 146
+ KP+++ICN I+D L +R+ + L++F DM+ P+V T+N ++ C
Sbjct: 246 RGMWNEGCNCKPDVVICNCIIDALCFKKRVPEALEVFQDMKERGCEPNVATYNSLIKHLC 425
Query: 147 LKSKVDMARELFDGM 161
+++ EL + M
Sbjct: 426 KIRRMEKVYELVEDM 470
Score = 30.0 bits (66), Expect = 0.30
Identities = 14/54 (25%), Positives = 27/54 (49%)
Frame = +3
Query: 124 SDMRNHMIFPDVCTFNIILNFFCLKSKVDMARELFDGMIECGFTPDVWCYHIMI 177
S R + D+ T+N+ILN +C+ A+ ++ ++ PD++ Y I
Sbjct: 36 SKAREFQLHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPDLFTYATFI 197
>AV772727
Length = 528
Score = 49.7 bits (117), Expect = 4e-07
Identities = 26/73 (35%), Positives = 44/73 (59%)
Frame = -2
Query: 106 ILDYLFKHRRLIKVLDLFSDMRNHMIFPDVCTFNIILNFFCLKSKVDMARELFDGMIECG 165
+LD L K+ + K + L +++ I PD+ T+NII++ C +V A+ELF ++ G
Sbjct: 509 LLDALCKNHHVDKAIALLERVKDKGIQPDMYTYNIIIDGLCKSGRVKDAQELFQDLLIKG 330
Query: 166 FTPDVWCYHIMIN 178
+ +V Y+IMIN
Sbjct: 329 YRLNVVTYNIMIN 291
Score = 38.1 bits (87), Expect = 0.001
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Frame = -2
Query: 5 LTLNILMNCYSHLGHMASASSVLGKFFKLGYEPDIVSLISLLKGFCINGKVLDAHE---- 60
+T + L++ H+ A ++L + G +PD+ + ++ G C +G+V DA E
Sbjct: 524 ITYHSLLDALCKNHHVDKAIALLERVKDKGIQPDMYTYNIIIDGLCKSGRVKDAQELFQD 345
Query: 61 -IARGFHCDQVMYETLTTDLCKSG 83
+ +G+ + V Y + LC G
Sbjct: 344 LLIKGYRLNVVTYNIMINGLCIEG 273
Score = 27.7 bits (60), Expect(2) = 0.12
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -2
Query: 2 PSTLTLNILMNCYSHLGHMASASSVLGKFFKLGYEPDIVSLISLLKGFCING 53
P T NI+++ G + A + GY ++V+ ++ G CI G
Sbjct: 428 PDMYTYNIIIDGLCKSGRVKDAQELFQDLLIKGYRLNVVTYNIMINGLCIEG 273
Score = 22.3 bits (46), Expect(2) = 0.12
Identities = 11/34 (32%), Positives = 17/34 (49%)
Frame = -3
Query: 68 DQVMYETLTTDLCKSGETLLVIQMLHEIDKPNLL 101
D + YET+ L + E +LHE++ LL
Sbjct: 214 DAITYETIIRVLFRKNENDKAQTLLHEMNARGLL 113
>AV779633
Length = 440
Score = 45.8 bits (107), Expect = 5e-06
Identities = 43/167 (25%), Positives = 71/167 (41%), Gaps = 3/167 (1%)
Frame = -2
Query: 7 LNILMNCYSHLGHMASASSVLGKFFKLGYEPDIVSLISLLKGFCINGKVLDAHEI---AR 63
LN L++ Y G M+ A +++ +K G +PDIVS SLLKGFC G ++ A +
Sbjct: 406 LNTLIDGYCEAGLMSQALALMENSWKTGVKPDIVSYNSLLKGFCKAGDLVRAESLFDEIL 227
Query: 64 GFHCDQVMYETLTTDLCKSGETLLVIQMLHEIDKPNLLICNRILDYLFKHRRLIKVLDLF 123
GF D +SG+ K N +D
Sbjct: 226 GFQRDG-----------ESGQL-----------KNN-------------------AVDTR 170
Query: 124 SDMRNHMIFPDVCTFNIILNFFCLKSKVDMARELFDGMIECGFTPDV 170
++RN I P + T+ +++ + ++ +R L++ M+ G PDV
Sbjct: 169 DELRN--IRPTLATYTTLISAYGKHCGIEESRSLYEQMVMSGIMPDV 35
>CB826792
Length = 485
Score = 45.8 bits (107), Expect = 5e-06
Identities = 20/70 (28%), Positives = 38/70 (53%)
Frame = +3
Query: 110 LFKHRRLIKVLDLFSDMRNHMIFPDVCTFNIILNFFCLKSKVDMARELFDGMIECGFTPD 169
L K R + + ++L M + + PDV T+N ++ C K+D A+E+F+ M++ TP
Sbjct: 3 LAKGRLVKEAVNLLQTMEKNNVTPDVVTYNSLIKPLCKNRKIDEAKEVFNDMMKRNITPT 182
Query: 170 VWCYHIMINL 179
+ +H +
Sbjct: 183 IRTFHAFFRI 212
Score = 25.8 bits (55), Expect = 5.7
Identities = 12/27 (44%), Positives = 16/27 (58%)
Frame = +3
Query: 34 GYEPDIVSLISLLKGFCINGKVLDAHE 60
G D S I L+ G +NGKV +AH+
Sbjct: 369 GVSHDRSSYIVLIHGLFLNGKVKEAHD 449
>AV429083
Length = 316
Score = 42.4 bits (98), Expect = 6e-05
Identities = 22/82 (26%), Positives = 45/82 (54%)
Frame = +3
Query: 97 KPNLLICNRILDYLFKHRRLIKVLDLFSDMRNHMIFPDVCTFNIILNFFCLKSKVDMARE 156
KP++ N ++D L K ++ ++ + M + PD+ T++ +L+ +CL + +
Sbjct: 36 KPDVSTFNILVDALCKKGKVKHAKNVLAVMIKQGVAPDLVTYSTLLDGYCLTKDMYKGKY 215
Query: 157 LFDGMIECGFTPDVWCYHIMIN 178
+ + M G TP+V Y+I+IN
Sbjct: 216 VLNAMGRVGVTPNVDSYNIVIN 281
Score = 41.6 bits (96), Expect = 1e-04
Identities = 22/58 (37%), Positives = 34/58 (57%), Gaps = 1/58 (1%)
Frame = +3
Query: 122 LFSDMR-NHMIFPDVCTFNIILNFFCLKSKVDMARELFDGMIECGFTPDVWCYHIMIN 178
LF +M + I PDV TFNI+++ C K KV A+ + MI+ G PD+ Y +++
Sbjct: 3 LFKEMELKNNIKPDVSTFNILVDALCKKGKVKHAKNVLAVMIKQGVAPDLVTYSTLLD 176
Score = 38.5 bits (88), Expect = 9e-04
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 2 PSTLTLNILMNCYSHLGHMASASSVLGKFFKLGYEPDIVSLISLLKGFCI 51
P T NIL++ G + A +VL K G PD+V+ +LL G+C+
Sbjct: 39 PDVSTFNILVDALCKKGKVKHAKNVLAVMIKQGVAPDLVTYSTLLDGYCL 188
Score = 32.7 bits (73), Expect = 0.047
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Frame = +3
Query: 60 EIARGFHCDQVMYETLTTDLCKSGETL----LVIQMLHEIDKPNLLICNRILDYLFKHRR 115
E+ D + L LCK G+ ++ M+ + P+L+ + +LD +
Sbjct: 18 ELKNNIKPDVSTFNILVDALCKKGKVKHAKNVLAVMIKQGVAPDLVTYSTLLDGYCLTKD 197
Query: 116 LIKVLDLFSDMRNHMIFPDVCTFNIILNFFCLKSKVDMA 154
+ K + + M + P+V ++NI++N FC VD A
Sbjct: 198 MYKGKYVLNAMGRVGVTPNVDSYNIVINGFCKVKLVDEA 314
>AV421386
Length = 312
Score = 39.3 bits (90), Expect = 5e-04
Identities = 19/64 (29%), Positives = 34/64 (52%)
Frame = +1
Query: 107 LDYLFKHRRLIKVLDLFSDMRNHMIFPDVCTFNIILNFFCLKSKVDMARELFDGMIECGF 166
+D K R + L F +M ++ P+ +NI++N F K+D+A + F M++ G
Sbjct: 115 IDGPLKAERCDEALKFFEEMLDYQCKPNSAIYNILINGFGKAGKIDIACDFFKRMVKEGI 294
Query: 167 TPDV 170
PD+
Sbjct: 295 RPDL 306
Score = 35.8 bits (81), Expect = 0.006
Identities = 21/75 (28%), Positives = 37/75 (49%)
Frame = +1
Query: 104 NRILDYLFKHRRLIKVLDLFSDMRNHMIFPDVCTFNIILNFFCLKSKVDMARELFDGMIE 163
N I+ L K L K LDL+ ++ + P CT+ ++ + D A + F+ M++
Sbjct: 1 NIIISALVKSNSLNKALDLYYELISGDFSPTPCTYGPFIDGPLKAERCDEALKFFEEMLD 180
Query: 164 CGFTPDVWCYHIMIN 178
P+ Y+I+IN
Sbjct: 181 YQCKPNSAIYNILIN 225
>BP042555
Length = 510
Score = 37.4 bits (85), Expect = 0.002
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +3
Query: 2 PSTLTLNILMNCYSHLGHMASASSVLGKFFKLGYEPDIVSLISLLKGFCINGKVLDAHEI 61
PS T N L++ Y + A +L K G PD+ + L+ GFC GK+ A E+
Sbjct: 282 PSVATYNELIHGYCRVDRFKEAVGILRDMAKRGXSPDVDTYYPLICGFCQTGKLGKAFEM 461
Score = 31.6 bits (70), Expect = 0.10
Identities = 19/76 (25%), Positives = 33/76 (43%)
Frame = +3
Query: 98 PNLLICNRILDYLFKHRRLIKVLDLFSDMRNHMIFPDVCTFNIILNFFCLKSKVDMAREL 157
P++ N ++ + R + + + DM PDV T+ ++ FC K+ A E+
Sbjct: 282 PSVATYNELIHGYCRVDRFKEAVGILRDMAKRGXSPDVDTYYPLICGFCQTGKLGKAFEM 461
Query: 158 FDGMIECGFTPDVWCY 173
M+ G PD Y
Sbjct: 462 KAKMVHKGILPDADTY 509
Score = 28.1 bits (61), Expect = 1.2
Identities = 17/62 (27%), Positives = 31/62 (49%), Gaps = 4/62 (6%)
Frame = +3
Query: 120 LDLFSDMRNHMIF----PDVCTFNIILNFFCLKSKVDMARELFDGMIECGFTPDVWCYHI 175
+D +M +MI P V T+N +++ +C + A + M + G +PDV Y+
Sbjct: 231 VDKAHNMLKYMIVRGFSPSVATYNELIHGYCRVDRFKEAVGILRDMAKRGXSPDVDTYYP 410
Query: 176 MI 177
+I
Sbjct: 411 LI 416
>TC13232
Length = 551
Score = 36.6 bits (83), Expect = 0.003
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +1
Query: 133 PDVCTFNIILNFFCLKSKVDMARELFDGMIECGFTPDVWCYHIMIN 178
P V T++IIL FC + ++DMA ++D M G P + + ++I+
Sbjct: 19 PTVSTYDIILRMFCDEERLDMAMAVWDQMRARGILPGMHVFFVLIS 156
>AV421658
Length = 281
Score = 35.4 bits (80), Expect = 0.007
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Frame = +1
Query: 98 PNLLICNRILDYLFKHRR--LIKVLDLFSDMRNHMIFPDVCTFNIILNFFCLKSKVDMAR 155
P+++ N ++ K + L K ++ ++M + I PD T+ ++ CL+ ++ A
Sbjct: 28 PDVVTYNTLISKFCKLKEPDLEKAFEMKAEMVHKGILPDADTYEPLIRTLCLQQRLSEAY 207
Query: 156 ELFDGMIECGFTPDVWCYHIMIN 178
+LF M+ G +P+ Y ++N
Sbjct: 208 DLFREMLRWGVSPNNETYTGLMN 276
Score = 30.4 bits (67), Expect = 0.23
Identities = 20/65 (30%), Positives = 32/65 (48%), Gaps = 3/65 (4%)
Frame = +1
Query: 126 MRNHMIFPDVCTFNIILNFFCLKSKVDM--ARELFDGMIECGFTPDVWCYHIMI-NLSVF 182
M + PDV T+N +++ FC + D+ A E+ M+ G PD Y +I L +
Sbjct: 7 MTERDLSPDVVTYNTLISKFCKLKEPDLEKAFEMKAEMVHKGILPDADTYEPLIRTLCLQ 186
Query: 183 SRMKE 187
R+ E
Sbjct: 187 QRLSE 201
Score = 28.1 bits (61), Expect = 1.2
Identities = 22/82 (26%), Positives = 37/82 (44%), Gaps = 6/82 (7%)
Frame = +1
Query: 68 DQVMYETLTTDLCKSGETLLV------IQMLHEIDKPNLLICNRILDYLFKHRRLIKVLD 121
D V Y TL + CK E L +M+H+ P+ ++ L +RL + D
Sbjct: 31 DVVTYNTLISKFCKLKEPDLEKAFEMKAEMVHKGILPDADTYEPLIRTLCLQQRLSEAYD 210
Query: 122 LFSDMRNHMIFPDVCTFNIILN 143
LF +M + P+ T+ ++N
Sbjct: 211 LFREMLRWGVSPNNETYTGLMN 276
>TC13348 weakly similar to UP|Q9LUJ4 (Q9LUJ4) Gb|AAF26800.1, partial (7%)
Length = 539
Score = 35.0 bits (79), Expect = 0.009
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +3
Query: 125 DMRNHMIFPDVCTFNIILNFFCLKSKVDMARELFDGMIECGFTPDVWCYHIMINL 179
DM I DV T+N +++ C S+ + A L M E TPD+ YH ++ +
Sbjct: 6 DMPKQGIVRDVVTYNTMISTACAHSREETALRLLKEMEERSCTPDLETYHPLLKM 170
>AV767789
Length = 560
Score = 31.6 bits (70), Expect = 0.10
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -1
Query: 2 PSTLTLNILMNCYSHLGHMASASSVLGKFFKLGYEPDIVSLISLLKGF 49
P+ +T N+LMN Y+ G + +L + L +PD V+ +++ F
Sbjct: 503 PTVMTYNMLMNAYARGGQHSKLPQLLKEMAALNLKPDSVTYSTMIYAF 360
>BF177625
Length = 284
Score = 31.6 bits (70), Expect = 0.10
Identities = 17/49 (34%), Positives = 26/49 (52%)
Frame = +1
Query: 138 FNIILNFFCLKSKVDMARELFDGMIECGFTPDVWCYHIMINLSVFSRMK 186
++ +LN VD LFD M++ GF P+ Y++M L VF + K
Sbjct: 16 YSCVLNCCSQALPVDELSRLFDEMLQRGFAPNTITYNVM--LDVFGKAK 156
>AV779144
Length = 544
Score = 31.2 bits (69), Expect = 0.14
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 133 PDVCTFNIILNFFCLKSKVDMARELFDGMIECGFTPD 169
P +N + CL+ K++ A ++++ M+E G PD
Sbjct: 461 PYATLYNAAVQGMCLRGKINFANKVYEKMLESGLQPD 351
>AV417736
Length = 428
Score = 30.8 bits (68), Expect = 0.18
Identities = 26/129 (20%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Frame = +1
Query: 22 SASSVLGKFFKLGYEPDIVSLISLLKGFCINGKVLDAHEIAR-----GFHCDQVMYETLT 76
+ + K G EPDI + L KG+ +G+ A + G + V++ T+
Sbjct: 4 NCEEIFNDMVKAGIEPDIHAYSILAKGYVRSGQPGKAEALLTSMRKYGLQPNVVIFTTII 183
Query: 77 TDLCKSGETLLVIQM---LHEIDKP-NLLICNRILDYLFKHRRLIKVLDLFSDMRNHMIF 132
+ C +G+ +++ +HE+ P NL ++ + ++ K +L M +
Sbjct: 184 SGWCTAGKMDRAVRLHEKMHEMGIPSNLKTYETLMWGYGEAKQPWKAEELLVTMEERGVA 363
Query: 133 PDVCTFNII 141
P++ T ++
Sbjct: 364 PEMSTMQLV 390
Score = 26.6 bits (57), Expect = 3.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 152 DMARELFDGMIECGFTPDVWCYHIM 176
D E+F+ M++ G PD+ Y I+
Sbjct: 1 DNCEEIFNDMVKAGIEPDIHAYSIL 75
Score = 26.6 bits (57), Expect = 3.3
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +1
Query: 121 DLFSDMRNHMIFPDVCTFNIILNFFCLKSKVDMARELFDGMIECGFTPDVWCYHIMIN 178
++F+DM I PD+ ++I+ + + A L M + G P+V + +I+
Sbjct: 13 EIFNDMVKAGIEPDIHAYSILAKGYVRSGQPGKAEALLTSMRKYGLQPNVVIFTTIIS 186
>BP044414
Length = 536
Score = 30.8 bits (68), Expect = 0.18
Identities = 23/78 (29%), Positives = 39/78 (49%), Gaps = 5/78 (6%)
Frame = -1
Query: 23 ASSVLGKFFKLGYEPDIVSLISLLKGFCINGKVLDAH----EIARGFH-CDQVMYETLTT 77
A L + K +PD+ SL +++KGF G + +A EI + + D+ + TL
Sbjct: 533 AVEFLQEMEKKDVKPDLFSLNAIIKGFVNEGNLDEAKKWFGEIEKSENDPDKNTFATLVP 354
Query: 78 DLCKSGETLLVIQMLHEI 95
LC+ G+ I ++ EI
Sbjct: 353 FLCEKGDLKTAIDVVKEI 300
>TC10215 similar to UP|Q9LW29 (Q9LW29) Transport inhibitor response-like
protein, partial (43%)
Length = 837
Score = 30.0 bits (66), Expect = 0.30
Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 6/45 (13%)
Frame = +3
Query: 115 RLIKVLDL----FSDMRNHMI--FPDVCTFNIILNFFCLKSKVDM 153
R ++ LDL D + + FPD CT + LNF CLK V++
Sbjct: 201 RFLRELDLQENEVEDQKGQWLSCFPDSCTSLVSLNFACLKGDVNL 335
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.342 0.152 0.492
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,878,302
Number of Sequences: 28460
Number of extensions: 56918
Number of successful extensions: 518
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of query: 208
length of database: 4,897,600
effective HSP length: 86
effective length of query: 122
effective length of database: 2,450,040
effective search space: 298904880
effective search space used: 298904880
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0593b.1