TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0592.7
         (116 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP066094                                                               69  5e-15
TC15537                                                                28  0.51
BP065241                                                               27  0.87
BI419240                                                               26  1.9
TC15937 similar to UP|Q9LL47 (Q9LL47) SAG101, partial (13%)            25  3.3
TC9742 similar to UP|Q8LBR0 (Q8LBR0) Phloem-specific lectin PP2-...    24  5.7
AV778091                                                               23  9.6

>BP066094 
          Length = 532

 Score = 68.9 bits (167), Expect(2) = 5e-15
 Identities = 33/85 (38%), Positives = 54/85 (62%)
 Frame = +2

Query: 22  ARITTIRVLLALASLYKFVIHQMDVKTAFLNGELDEEVYMKQPEGFVIKGQVQKVCKLTK 81
           ++   IR+L++ +  +  ++HQM+VK+AFLNG + EEVY+ QP G   +     + KL K
Sbjct: 86  SKTEAIRLLISFSVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIFKLKK 265

Query: 82  SLYELKQTPKKKWHQKFDQVVLAHE 106
           SLY LKQ P + W+++    +L +E
Sbjct: 266 SLYGLKQAP-RAWYERLSSFLLENE 337



 Score = 25.4 bits (54), Expect(2) = 5e-15
 Identities = 10/18 (55%), Positives = 15/18 (82%)
 Frame = +3

Query: 6  FTQKEGIGYFDTYAPVAR 23
          ++Q+ GI Y +T+APVAR
Sbjct: 39 YSQQ*GIDYTETFAPVAR 92


>TC15537 
          Length = 589

 Score = 27.7 bits (60), Expect = 0.51
 Identities = 21/80 (26%), Positives = 36/80 (44%), Gaps = 10/80 (12%)
 Frame = -2

Query: 40  VIHQMDVKTAFLNGELDEEVYMKQPEGFVIKGQVQKVCKLTKSLYEL------KQTPKKK 93
           ++  M    A L   ++  ++++QP  F IK  +     +T S+Y++      KQ PK  
Sbjct: 288 IVCSMKASEAELTMLINMIMFVRQPLSFQIKEPLPSFIDVTFSIYQV*MVPAHKQLPKPP 109

Query: 94  WHQKFDQVV----LAHEYKI 109
            H  F + V      H +KI
Sbjct: 108 QHDAFYRRVSHRFAQHNFKI 49


>BP065241 
          Length = 563

 Score = 26.9 bits (58), Expect = 0.87
 Identities = 11/29 (37%), Positives = 18/29 (61%)
 Frame = +1

Query: 86  LKQTPKKKWHQKFDQVVLAHEYKINEFDK 114
           LK+  KKKW +K  + +     ++N+FDK
Sbjct: 295 LKKERKKKWDEKNQEDIARAVKQLNDFDK 381


>BI419240 
          Length = 561

 Score = 25.8 bits (55), Expect = 1.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 69  IKGQVQKVCKLTKSLYELKQTPKKKWHQKFDQV 101
           IKG+V+   +  KS+ ELK+  K+   Q + QV
Sbjct: 263 IKGEVKSNPEFEKSVKELKERTKQTTEQLYKQV 361


>TC15937 similar to UP|Q9LL47 (Q9LL47) SAG101, partial (13%)
          Length = 1240

 Score = 25.0 bits (53), Expect = 3.3
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 14/105 (13%)
 Frame = +2

Query: 7   TQKEGIGYFDTYAPVARITTIRVLLA---LASLYKFVIHQMDVK-----TAFLNGEL-DE 57
           T+ +GIGY+D Y  +   T   V+L    L   ++ V+ +  +K     +AF N  L   
Sbjct: 305 TKDQGIGYYDCYKNMYHETNFDVILIHKNLTVYWEKVVEEAKLKPRREVSAFRNRYLYGG 484

Query: 58  EVYMKQPEGFVI-----KGQVQKVCKLTKSLYELKQTPKKKWHQK 97
             Y +  E  VI     +G      + +K    L++  K+ W ++
Sbjct: 485 TTYRRIVEPLVIAQYYKEGGTDYAIQRSKHFEVLQEWLKEAWDRR 619


>TC9742 similar to UP|Q8LBR0 (Q8LBR0) Phloem-specific lectin PP2-like
           protein, partial (20%)
          Length = 794

 Score = 24.3 bits (51), Expect = 5.7
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 43  QMDVKTAFLNGELDEEVYMKQPE-GFVIKG 71
           +++V   F +GE+DEEV +   E G+ +KG
Sbjct: 475 EIEVGEFFCDGEIDEEVKVSVMEVGYQLKG 564


>AV778091 
          Length = 447

 Score = 23.5 bits (49), Expect = 9.6
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 80  TKSLYELKQTPKKKWHQKF-DQVVLAHEYKINEF 112
           +  +++ K+TPKKK  Q F  Q + +H+  I+ F
Sbjct: 48  SNKIHQFKRTPKKKQPQHFIIQFL*SHQKNISFF 149


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.328    0.143    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,643,344
Number of Sequences: 28460
Number of extensions: 16966
Number of successful extensions: 98
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of query: 116
length of database: 4,897,600
effective HSP length: 78
effective length of query: 38
effective length of database: 2,677,720
effective search space: 101753360
effective search space used: 101753360
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)