TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0590c.5
         (441 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP030435                                                              119  1e-27
BG662122                                                               83  8e-17
BP033666                                                               39  9e-08
BP065719                                                               51  3e-07
TC12971 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14...    30  1.0
AV769356                                                               28  2.3
TC17553 weakly similar to UP|AAP20176 (AAP20176) Kinase substrat...    28  2.3
TC14970 similar to UP|O24294 (O24294) Legumin (Minor small) prec...    28  2.3
BI419411                                                               28  2.3
BP059356                                                               28  3.0
TC7927 similar to UP|Q93YR3 (Q93YR3) HSP associated protein like...    28  3.9
TC11979 similar to UP|Q9LVH4 (Q9LVH4) GTPase activating protein-...    28  3.9
TC15229 weakly similar to UP|O60585 (O60585) Ser/Arg-related nuc...    27  6.7
BP057647                                                               27  8.8

>BP030435 
          Length = 533

 Score =  119 bits (297), Expect = 1e-27
 Identities = 72/162 (44%), Positives = 87/162 (53%)
 Frame = +1

Query: 280 CEFHRSAGHDTDDCWTLQREIDKLIRAGYQGNRQGQWRNGGDQNKAHKREEERADTKGKK 339
           C +H++ GH T++C TLQRE+ KLI  G                            K  +
Sbjct: 103 CVYHQAMGHITEECRTLQREVGKLIATG----------------------------KPTR 198

Query: 340 KQESAAIATKGADDTFARHSGPPVGTINTIAGGFGGGGDTHAARKRHVRAVNSVHEVAFG 399
            Q   A   KG               ++TIAGGFGGGG T AARKR+ RAVN+V EV FG
Sbjct: 199 IQGGNAPVPKG---------------VHTIAGGFGGGGITSAARKRYARAVNTVTEVLFG 333

Query: 400 FVHPDITISMADFEGIKPHKDDPIVVQLRMNSFNVRRVLLDQ 441
           F HP IT S  DF  IKPH D+PIV+ LR+N  NV+RVLLDQ
Sbjct: 334 FSHPVITFSSDDFIRIKPHLDNPIVILLRVNQLNVQRVLLDQ 459


>BG662122 
          Length = 386

 Score = 83.2 bits (204), Expect = 8e-17
 Identities = 50/126 (39%), Positives = 74/126 (58%), Gaps = 11/126 (8%)
 Frame = +2

Query: 213 KEQLYPRRDDYEQRRPWQSKSHRQREETDMVMNTDVSDMLRGASDANLVDEPEAPKYQPR 272
           +EQLYPRR+  ++RRP Q    R+REE DM +N  ++D+L+    A++V +       PR
Sbjct: 11  REQLYPRREALDRRRP*QPMGSRRREE-DMELNAHLTDILQDVKAAHMVGKSGQS*PPPR 187

Query: 273 DA-NPKKWCEFHRSAGHDTDDCWTLQREIDKLIRAG----------YQGNRQGQWRNGGD 321
              +  K CE+ RS  HD DDC+TL+REI+KLI+ G           QG+RQ   R  GD
Sbjct: 188 RGIDTTK*CEYRRSVVHDIDDCFTLKREIEKLIKMGRLKQYDRGSRQQGDRQQGGRLQGD 367

Query: 322 QNKAHK 327
           + + ++
Sbjct: 368 RQQGNR 385


>BP033666 
          Length = 342

 Score = 38.9 bits (89), Expect(2) = 9e-08
 Identities = 19/40 (47%), Positives = 25/40 (62%)
 Frame = -1

Query: 70  FSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARY 109
           F + FL  FSAN+ Q  T  DL+NI QQ GE ++ Y + Y
Sbjct: 273 FFN*FLTXFSANQTQKATSADLFNICQQVGERVRPYFSLY 154



 Score = 33.9 bits (76), Expect(2) = 9e-08
 Identities = 15/26 (57%), Positives = 17/26 (64%)
 Frame = -2

Query: 47  TFKSTAMAWFTTLPRGSISNFRDFSS 72
           +FK  AM WF   P  SISNF DFS+
Sbjct: 341 SFKGVAMTWFIKQPPYSISNFTDFST 264


>BP065719 
          Length = 567

 Score = 51.2 bits (121), Expect = 3e-07
 Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
 Frame = +3

Query: 1   IPDNMKTLVLDSYSGDSDPK--DHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTT 58
           +P   K      +SGDS     +H+  +  +   +A ++ +K + FPS+    A  WFTT
Sbjct: 162 LPRGWKVPKFTKFSGDSGESTVEHIARYQIEAGDLAINENLKMKYFPSSLTKNAFTWFTT 341

Query: 59  LPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARY 109
           L   S+  +      F  QF   + + V+  DL +++++  ES+ +Y+ R+
Sbjct: 342 LAPRSVHTWAQLERIFHEQFFRGECK-VSXKDLASVKRKPAESIDDYLNRF 491


>TC12971 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14F18_180
           {Arabidopsis thaliana;}, partial (7%)
          Length = 721

 Score = 29.6 bits (65), Expect = 1.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 319 GGDQNKAHKREEERADTKGKKKQE 342
           GGD+  ++ REEE  D K K K+E
Sbjct: 261 GGDEIPSNNREEEEGDNKSKNKKE 332


>AV769356 
          Length = 574

 Score = 28.5 bits (62), Expect = 2.3
 Identities = 19/59 (32%), Positives = 26/59 (43%), Gaps = 1/59 (1%)
 Frame = -2

Query: 19  PKDHLLYFNTKMV-IIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLV 76
           PK  +  F T ++  +    A +    P TFK   + W T L   S SN RD   K L+
Sbjct: 546 PKGDVYSFGTVLLEFVTGERATQVAKAPETFKGNLVEWITQLT--SHSNLRDAIDKSLL 376


>TC17553 weakly similar to UP|AAP20176 (AAP20176) Kinase substrate HASPP28
           (Fragment), partial (61%)
          Length = 754

 Score = 28.5 bits (62), Expect = 2.3
 Identities = 32/164 (19%), Positives = 65/164 (39%), Gaps = 14/164 (8%)
 Frame = +3

Query: 203 GKGKSVFKPTKEQLYPRRDD-----------YEQRRPWQSKSHRQREETDMVMNTDVSDM 251
           G+GK   KPT  + +   +D           ++Q+     K   + E T    + + +  
Sbjct: 87  GRGKFKAKPTGRRQFSTPEDMLAGTSTRPRTFKQKEVEDEKEVSEEEATSGDESEEETTK 266

Query: 252 LRGASDANLVDEPEAPK---YQPRDANPKKWCEFHRSAGHDTDDCWTLQREIDKLIRAGY 308
            +G      ++ P   K    + RD + +K  E  R    + +     QR  ++ +R   
Sbjct: 267 TKGTQGVIEIENPNLVKPKSLKARDVDLEKTTELSRREREEIEK----QRAHERYMRLQE 434

Query: 309 QGNRQGQWRNGGDQNKAHKREEERADTKGKKKQESAAIATKGAD 352
           QG  +   ++  D  +     ++RA+   K+ +E AA   K ++
Sbjct: 435 QGKTE---QSKKDLERLALIRQQRAEAAKKRDEEKAAKEQKKSE 557


>TC14970 similar to UP|O24294 (O24294) Legumin (Minor small) precursor,
           partial (51%)
          Length = 1566

 Score = 28.5 bits (62), Expect = 2.3
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = +1

Query: 162 DEEDEAFKRKRAKLEKGDTSPKRVKKDRSGEDKGD--GKQQRPGKGKSVFKPTKEQLYPR 219
           DE+ E   R      +    P R + +   ED+ +  G ++ PG+ +  F+  +E+    
Sbjct: 532 DEDQEQHGRHSRPSGRRTRRPSREEDEDEDEDEEERQGGRRGPGERQRHFEREEEEEREE 711

Query: 220 RDDYEQRRPWQSKSHRQREET 240
           R    + + WQ +   + EE+
Sbjct: 712 RGPRGRGKHWQREEEEEEEES 774


>BI419411 
          Length = 408

 Score = 28.5 bits (62), Expect = 2.3
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = -3

Query: 140 KLTRKPARSMGEMRARASTYILDEEDEAFKRKRAKLEKGDTSPKRVKKDRSGEDKGDGKQ 199
           K  R  A ++ + RAR    +L +     +R+R   + G T+P RV   R G+D    + 
Sbjct: 277 KAVRLEALAVDDRRARLVVLLLGDPHGLERRQRR--QNGATNPHRVLALRRGDDLDLHRS 104

Query: 200 QRPGK 204
           +R G+
Sbjct: 103 RRQGR 89


>BP059356 
          Length = 436

 Score = 28.1 bits (61), Expect = 3.0
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
 Frame = +1

Query: 321 DQNKAHKREEERADTKGKKKQESAAIAT----KGADDTFARHS----GPPVGTINTIAGG 372
           D+N  +K+E   A+   KK  E+  + +    +   D F         PP G     AGG
Sbjct: 184 DKNPNNKKE---AEANFKKISEAYDVLSDPQKRAVYDQFGEEGLNGQVPPPG-----AGG 339

Query: 373 FGGGGDTHAARKR-HVRAVNSVHEVAFGFVHP 403
           F GGGD   A  R + R+ + +    FGF  P
Sbjct: 340 FSGGGDGGPASFRFNPRSADDILSEFFGFSSP 435


>TC7927 similar to UP|Q93YR3 (Q93YR3) HSP associated protein like, partial
           (56%)
          Length = 1116

 Score = 27.7 bits (60), Expect = 3.9
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = +1

Query: 324 KAHKREEERADTKGKKKQESAAIAT-----KGADDTFARHSGPPVGTINTIAGGFGGGG 377
           + HK  EE+   + ++++ + A A      K    + +R+ G   G    + GGF GGG
Sbjct: 298 RLHKEREEKRTERERQRRRAEAQAAYEKAKKQEQSSSSRNPGGMPGEFPGMPGGFPGGG 474


>TC11979 similar to UP|Q9LVH4 (Q9LVH4) GTPase activating protein-like,
           partial (94%)
          Length = 711

 Score = 27.7 bits (60), Expect = 3.9
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +3

Query: 224 EQRRPWQSKSHRQREETDMVMNTDVSDMLRGASDANLVDEPEAPKYQPRDANPKKW 279
           E  R W S+ HR +E T     T   ++L G     L      P++ P+ A  + W
Sbjct: 498 EDERNWPSQRHRDQENT-----TKQGELLGGRELYLL*QRQNYPRHDPQIATCRMW 650


>TC15229 weakly similar to UP|O60585 (O60585) Ser/Arg-related nuclear matrix
           protein, partial (4%)
          Length = 965

 Score = 26.9 bits (58), Expect = 6.7
 Identities = 29/97 (29%), Positives = 40/97 (40%), Gaps = 3/97 (3%)
 Frame = +2

Query: 135 GGLNSKLTRKPARSMGEMRARASTYILDEEDEAFKRKRAKLEKGDTSPKR-VKKDRSGED 193
           GG + K    PAR+ G  R ++S   +  E    +    +   G   P R + K R GE 
Sbjct: 179 GGDSPKPDLVPARAQG--RRKSSLRAVPGEAVTAESGCRRSAGGANRPSRGL*KVRCGEG 352

Query: 194 KGDGKQQRPGKGKS--VFKPTKEQLYPRRDDYEQRRP 228
            GDG    PG G    V +P  +      D+ E  RP
Sbjct: 353 FGDGGAPLPGSGGLC*VRRPRADGADAGEDNIENIRP 463


>BP057647 
          Length = 567

 Score = 26.6 bits (57), Expect = 8.8
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -3

Query: 270 QPRDANPKKWCEFHRSAGHDTDDCWTLQREIDKLIRAGYQGNRQGQWRNGGDQNKAHKRE 329
           +P +++P    E    A    +  WT++REI   +R    G+    W  GGD + A   E
Sbjct: 250 RPGESSPATSREKKSGAAESGEAQWTVEREIS--LRKTESGS---WWSEGGDLSTAAVEE 86

Query: 330 E 330
           E
Sbjct: 85  E 83


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.315    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,156,268
Number of Sequences: 28460
Number of extensions: 72262
Number of successful extensions: 545
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of query: 441
length of database: 4,897,600
effective HSP length: 93
effective length of query: 348
effective length of database: 2,250,820
effective search space: 783285360
effective search space used: 783285360
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 57 (26.6 bits)