TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0590b.4
         (283 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18769 similar to GB|CAB81029.1|7269936|ATCHRIV72 cyclic nucleo...   207  2e-54
BP052112                                                               75  1e-14
AI967361                                                               74  3e-14
BP080087                                                               39  0.001
AV775050                                                               39  0.001
BP041383                                                               36  0.008
TC8653 similar to UP|AAS46232 (AAS46232) Methionine sulfoxide re...    31  0.27
TC17925                                                                30  0.46
TC15261 weakly similar to UP|Q9ZQ55 (Q9ZQ55) At2g22570 protein, ...    30  0.61
AV767074                                                               27  3.0
AV418747                                                               27  3.9
TC17492 homologue to UP|R25A_ARATH (Q9SIK2) 40S ribosomal protei...    27  3.9
AV409108                                                               27  5.1
AU089273                                                               26  6.7
BP036492                                                               26  8.8
TC14114 similar to UP|FD62_SOYBN (P48631) Omega-6 fatty acid des...    26  8.8

>TC18769 similar to GB|CAB81029.1|7269936|ATCHRIV72 cyclic nucleotide and
           calmodulin-regulated ion channel-like protein
           {Arabidopsis thaliana;} , partial (29%)
          Length = 646

 Score =  207 bits (527), Expect = 2e-54
 Identities = 109/213 (51%), Positives = 138/213 (64%), Gaps = 2/213 (0%)
 Frame = +2

Query: 21  EWWMRKRQLPQGLRQRVRNYERQRWTAMRGVDECQMIRNLPQGLRRDIKYHLCLDLVRQV 80
           E WMR RQLP+ LR RVR + + +W A RGVDE  ++R LP  LRRDI+ HLCLDLVR+V
Sbjct: 11  EEWMRHRQLPEDLRFRVRRFVQYKWLATRGVDEETILRALPADLRRDIQRHLCLDLVRRV 190

Query: 81  PLFQHMDDLVLENICDRVKSLVFTKGETITREGDPVKRMLFVVRGHLQSS--QDLRDGVK 138
           P F  MDD +L+ IC+R+ S + T+G  I REGDPV  MLF++RG L SS     R G  
Sbjct: 191 PFFSQMDDQLLDAICERLISSLSTQGTYIVREGDPVTEMLFIIRGRLDSSTTNGGRSGFF 370

Query: 139 SYCTLGPGNFSGDELLSWCLRRPFIERLPPSSATLVTLETTEAFGLEAEDVRYVTQHFRY 198
           +   L PG+F G+ELLSW L       LP S+ T+  L   EAF L AED+++V   FR 
Sbjct: 371 NSIILRPGDFCGEELLSWALLPKSTVNLPSSTRTVKALSEVEAFALRAEDLKFVANQFR- 547

Query: 199 TFMKEKVKRSARYYSPGWRTWAAVAIQLAWRRY 231
               +K++ + R+YS  WRTWAA  IQ AWRRY
Sbjct: 548 RLRSKKLQHTFRFYSHHWRTWAACFIQAAWRRY 646


>BP052112 
          Length = 553

 Score = 75.1 bits (183), Expect = 1e-14
 Identities = 59/167 (35%), Positives = 86/167 (51%), Gaps = 12/167 (7%)
 Frame = -2

Query: 109 ITREGDPVKRMLFVVRGHLQSSQDLRDGVKSYCTLGPGNFSGDELLSWCLRRPFIE---- 164
           I  +G  +++M+FVVRG L+S  +  DG +    L  G+  G+EL++W L    +     
Sbjct: 552 ILSQGSLIEKMVFVVRGKLESIGE--DGTRM--PLSEGDACGEELMTWYLEHSSVSSDGR 385

Query: 165 --RLPP----SSATLVTLETTEAFGLEAEDVRYVTQHFRYTFMKEKVKRSARYYSPGWRT 218
             RLP     S+ T+  L   EAF L A D+  VT  F       +V+ + RY SP WR+
Sbjct: 384 KVRLPGQRLVSNRTVKCLTNVEAFSLSAADLEEVTILFTRFLRSPQVQGALRYESPYWRS 205

Query: 219 WAAVAIQLAWRRYKHRLSLTSLSFIRPRRPASRC--TSMEEDRLRLY 263
            AA  IQ+AWR  + RLS  + S +  +   S C  TS   DR+ L+
Sbjct: 204 LAANRIQVAWRYRQKRLSRVN-SSVTTKH*GSSCNVTSDFFDRIMLH 67


>AI967361 
          Length = 358

 Score = 73.9 bits (180), Expect = 3e-14
 Identities = 43/106 (40%), Positives = 63/106 (58%), Gaps = 2/106 (1%)
 Frame = +2

Query: 111 REGDPVKRMLFVVRGHLQS--SQDLRDGVKSYCTLGPGNFSGDELLSWCLRRPFIERLPP 168
           REGDPV  MLF++RG L +  +   R G  +   L  G+F G+ELL+W L       LP 
Sbjct: 11  REGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEFLKAGDFCGEELLTWALDPHSSSNLPI 190

Query: 169 SSATLVTLETTEAFGLEAEDVRYVTQHFRYTFMKEKVKRSARYYSP 214
           S+ T+ TL   EAF L+A+D+++V   FR    K+ ++ + R+YSP
Sbjct: 191 STRTVQTLAEVEAFALKADDLKFVASQFRRLHSKQ-LRHTFRFYSP 325


>BP080087 
          Length = 382

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = -1

Query: 35  QRVRNYERQRWTAMRGVDECQMIRNLPQGLRRD 67
           +RVR  ER  W A RGV+E  ++ NLP+ L+RD
Sbjct: 331 RRVRQAERYNWAATRGVNEEMVMENLPEDLQRD 233


>AV775050 
          Length = 382

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 22/52 (42%), Positives = 31/52 (59%)
 Frame = -3

Query: 190 RYVTQHFRYTFMKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLSLTSLS 241
           RY +Q F     + +V+ + RY SP WR+ AA  IQ+AWR  + RLS  + S
Sbjct: 353 RYFSQDF---LRRPQVQGALRYESPYWRSLAANRIQVAWRYRQTRLSRVNSS 207


>BP041383 
          Length = 476

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 14/19 (73%), Positives = 14/19 (73%)
 Frame = -2

Query: 216 WRTWAAVAIQLAWRRYKHR 234
           WRTWAA  IQ AWRRY  R
Sbjct: 475 WRTWAACFIQAAWRRYSKR 419


>TC8653 similar to UP|AAS46232 (AAS46232) Methionine sulfoxide reductase A,
           partial (71%)
          Length = 1175

 Score = 30.8 bits (68), Expect = 0.27
 Identities = 12/42 (28%), Positives = 24/42 (56%)
 Frame = -1

Query: 4   SATTSKKQAMQLRMRNLEWWMRKRQLPQGLRQRVRNYERQRW 45
           +AT  +K + + +M  +EWWMRK ++    R    +++  +W
Sbjct: 221 AATLDRKSSGRGKMGKIEWWMRKNKMKTRARDWDWDWDWAKW 96


>TC17925 
          Length = 546

 Score = 30.0 bits (66), Expect = 0.46
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 225 QLAWRRYKHRLSLTSLSFIRPRRPASRCTSMEEDRLRLYTALLTSPKPND 274
           Q+ WR + H L+LTSL+  RP+ P+S C      R   +       +P+D
Sbjct: 137 QVQWRLHTH-LNLTSLNHQRPQVPSSTCHQCPPTRPETHLQRKGFGRPHD 283


>TC15261 weakly similar to UP|Q9ZQ55 (Q9ZQ55) At2g22570 protein, partial
           (75%)
          Length = 1031

 Score = 29.6 bits (65), Expect = 0.61
 Identities = 14/44 (31%), Positives = 24/44 (53%)
 Frame = +1

Query: 109 ITREGDPVKRMLFVVRGHLQSSQDLRDGVKSYCTLGPGNFSGDE 152
           + +E  PVK+    + G +++   L D V  +CT+G GN +  E
Sbjct: 55  LVKEEIPVKQQPLRLSGDIKTGLVLVDVVNGFCTVGAGNMAPTE 186


>AV767074 
          Length = 481

 Score = 27.3 bits (59), Expect = 3.0
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -1

Query: 197 RYTFMKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLSLTSLSFIRPRR 247
           +++ M  ++K  + +Y   +      A+ + WR+ KH+L    LS  R RR
Sbjct: 268 KWSEMWRQLKNISHHYEFQYPPKKEDAVNMLWRQVKHKLPGVRLSVHRSRR 116


>AV418747 
          Length = 386

 Score = 26.9 bits (58), Expect = 3.9
 Identities = 11/26 (42%), Positives = 12/26 (45%)
 Frame = -2

Query: 21 EWWMRKRQLPQGLRQRVRNYERQRWT 46
          EWW R      G R  V  YE  RW+
Sbjct: 82 EWWWRSHARAYGRR*GVDKYEAARWS 5


>TC17492 homologue to UP|R25A_ARATH (Q9SIK2) 40S ribosomal protein S25-1,
           complete
          Length = 559

 Score = 26.9 bits (58), Expect = 3.9
 Identities = 13/31 (41%), Positives = 16/31 (50%)
 Frame = +3

Query: 148 FSGDELLSWCLRRPFIERLPPSSATLVTLET 178
           FS  +L+SW  RR  +  LPPS   L    T
Sbjct: 24  FSFPQLISWLQRRIRLPHLPPSPPNLAMAST 116


>AV409108 
          Length = 359

 Score = 26.6 bits (57), Expect = 5.1
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 228 WRRYKHRLSLTSLSFIRP 245
           WRRY H  S+TSL F  P
Sbjct: 40  WRRYLHHHSITSLPFHLP 93


>AU089273 
          Length = 420

 Score = 26.2 bits (56), Expect = 6.7
 Identities = 11/21 (52%), Positives = 18/21 (85%)
 Frame = -3

Query: 87  DDLVLENICDRVKSLVFTKGE 107
           D++VLE++C+ +K L FTKG+
Sbjct: 139 DNMVLESVCNEMK-LYFTKGK 80


>BP036492 
          Length = 552

 Score = 25.8 bits (55), Expect = 8.8
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -3

Query: 155 SWCLRRPFIERLPPSSATLVTLETTEAFGLEAEDVRYVTQH 195
           SWC     I  +P S+ATL         GL+   + +   H
Sbjct: 280 SWCFAVNIISEIPASAATLAHWAVLRPVGLKIAGLSWPVPH 158


>TC14114 similar to UP|FD62_SOYBN (P48631) Omega-6 fatty acid desaturase,
           endoplasmic reticulum isozyme 2  , complete
          Length = 1634

 Score = 25.8 bits (55), Expect = 8.8
 Identities = 14/43 (32%), Positives = 22/43 (50%)
 Frame = -1

Query: 29  LPQGLRQRVRNYERQRWTAMRGVDECQMIRNLPQGLRRDIKYH 71
           LP+ L+ + +   R R   +        +RNLP GL R ++YH
Sbjct: 680 LPETLKVKYKGQPRVRVIVI--------VRNLPSGLLRYLEYH 576


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,153,914
Number of Sequences: 28460
Number of extensions: 72193
Number of successful extensions: 468
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of query: 283
length of database: 4,897,600
effective HSP length: 89
effective length of query: 194
effective length of database: 2,364,660
effective search space: 458744040
effective search space used: 458744040
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)