BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0590a.3
(270 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC7803 homologue to UP|Q9XQB1 (Q9XQB1) LHCII type III chlorophyl... 556 e-159
TC14091 homologue to UP|Q93YG3 (Q93YG3) Chlorophyll a/b binding ... 363 e-101
TC7794 homologue to UP|Q9M600 (Q9M600) Chlorophyll a/b binding p... 358 e-100
TC7795 homologue to UP|CB2G_LYCES (P07369) Chlorophyll a-b bindi... 354 8e-99
BP036028 233 2e-62
TC12237 homologue to UP|CB23_LYCES (P27489) Chlorophyll a-b bind... 217 1e-57
AV422060 167 2e-42
TC7802 homologue to UP|Q32904 (Q32904) Light harvesting protein,... 136 3e-33
TC8263 homologue to UP|Q41038 (Q41038) Type II chlorophyll a/b b... 124 2e-29
TC8005 similar to UP|Q9XQB2 (Q9XQB2) Chlorophyll a/b binding pro... 119 7e-28
TC8043 similar to PIR|S00443|S00443 chlorophyll a/b-binding prot... 118 9e-28
BP048304 116 4e-27
CN825719 114 2e-26
TC14513 homologue to UP|Q7M1K9 (Q7M1K9) Chlorophyll a/b-binding ... 106 4e-24
BP034985 103 3e-23
TC7909 similar to UP|CB4C_ARATH (Q9S7W1) Chlorophyll a-b binding... 101 2e-22
AV773542 71 5e-21
AV428776 93 4e-20
BP034928 65 2e-18
AV774181 86 5e-18
>TC7803 homologue to UP|Q9XQB1 (Q9XQB1) LHCII type III chlorophyll a/b
binding protein, complete
Length = 1178
Score = 556 bits (1433), Expect = e-159
Identities = 270/270 (100%), Positives = 270/270 (100%)
Frame = +1
Query: 1 MAATLMAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKY 60
MAATLMAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKY
Sbjct: 166 MAATLMAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKY 345
Query: 61 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEV 120
LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEV
Sbjct: 346 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEV 525
Query: 121 LEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI 180
LEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI
Sbjct: 526 LEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI 705
Query: 181 NGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 240
NGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTG
Sbjct: 706 NGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 885
Query: 241 KGPLENLLDHLDDPVANNAWVYATKFVPGS 270
KGPLENLLDHLDDPVANNAWVYATKFVPGS
Sbjct: 886 KGPLENLLDHLDDPVANNAWVYATKFVPGS 975
>TC14091 homologue to UP|Q93YG3 (Q93YG3) Chlorophyll a/b binding protein
type II, complete
Length = 1116
Score = 363 bits (933), Expect = e-101
Identities = 186/264 (70%), Positives = 207/264 (77%), Gaps = 9/264 (3%)
Frame = +2
Query: 15 TVIKPSPFLGQTKGSNSNTL-RDVVSMGTGKYTMGN-------DLWYGPDRVKYLGPFSA 66
+ I+ S F GQT N L R G G++TM +WYGPDR KYLGPFS
Sbjct: 68 SAIQQSAFTGQTALKQGNELLRKAGGFGKGRFTMRRTVKSAPQSIWYGPDRPKYLGPFSE 247
Query: 67 QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVR 126
Q PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC PE+LE+
Sbjct: 248 QIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILER-NG 424
Query: 127 VDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGV 186
V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QV+LMGL+EG+R+ G P +
Sbjct: 425 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGLIEGYRVGGGP-L 601
Query: 187 GEG-NNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 245
GEG + LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++
Sbjct: 602 GEGLDPLYPGGA-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQ 778
Query: 246 NLLDHLDDPVANNAWVYATKFVPG 269
NL DH+ DPVANNAW +AT FVPG
Sbjct: 779 NLYDHVADPVANNAWAFATNFVPG 850
>TC7794 homologue to UP|Q9M600 (Q9M600) Chlorophyll a/b binding protein
precursor, partial (97%)
Length = 2581
Score = 358 bits (918), Expect = e-100
Identities = 189/273 (69%), Positives = 209/273 (76%), Gaps = 4/273 (1%)
Frame = +1
Query: 1 MAATLMAATTAS-SGTVIKPSPF---LGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPD 56
MAA+ MA ++ S +G + SP +G+ + T + VVS G+ WYGPD
Sbjct: 400 MAASTMALSSPSLAGQALNLSPSSQEVGRFSMRKAATTKKVVSSGSP--------WYGPD 555
Query: 57 RVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCI 116
RVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+
Sbjct: 556 RVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCV 735
Query: 117 TPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVE 176
PE+L + V F E VWFKAGSQIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VE
Sbjct: 736 FPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVE 912
Query: 177 GFRINGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQA 236
G+RI G P + LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQA
Sbjct: 913 GYRIAGGPLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 1089
Query: 237 IVTGKGPLENLLDHLDDPVANNAWVYATKFVPG 269
IVTGKGPLENL DHL DPV NNAW YAT FVPG
Sbjct: 1090IVTGKGPLENLADHLSDPVNNNAWAYATNFVPG 1188
Score = 198 bits (504), Expect = 7e-52
Identities = 111/210 (52%), Positives = 134/210 (62%), Gaps = 3/210 (1%)
Frame = +1
Query: 52 WYGPDRVKYLGPF---SAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 108
WYGPDR +L ++ P YLTGE PGDYG+D GL PE FAK +A E+IH RWA
Sbjct: 1705 WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWA 1884
Query: 109 MLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 168
MLGA G I PE L K+ E VWFK G+ + L+Y G P + ++AV+ +
Sbjct: 1885 MLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKP--IPINLVVAVVA-E 2055
Query: 169 VLLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFS 228
V+L+G E +RI G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMFS
Sbjct: 2056 VVLLGGAEYYRITN--GLDFEDKLHPGGP-FDPLGLAKDPDQAALLKVKEIKNGRLAMFS 2226
Query: 229 MFGFFVQAIVTGKGPLENLLDHLDDPVANN 258
M GFF+QA VTG GP+ENL HL DP NN
Sbjct: 2227 MLGFFIQAYVTGDGPVENLAKHLSDPFGNN 2316
>TC7795 homologue to UP|CB2G_LYCES (P07369) Chlorophyll a-b binding protein
3C, chloroplast precursor (LHCII type I CAB-3C) (LHCP),
partial (97%)
Length = 1058
Score = 354 bits (909), Expect = 8e-99
Identities = 186/270 (68%), Positives = 206/270 (75%), Gaps = 1/270 (0%)
Frame = +2
Query: 1 MAATLMAATTAS-SGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVK 59
MA + MA ++ S +G IK +P + T T+R + K WYGPDRVK
Sbjct: 59 MATSTMAVSSPSLAGQAIKLAPSIQDT---GRITMRKTTTKS--KPVSSGSPWYGPDRVK 223
Query: 60 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPE 119
YLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE
Sbjct: 224 YLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 403
Query: 120 VLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR 179
+L + V F E VWFKAGSQIFSEGGLDYLGNP+LVHAQSILA+ QV+LMG VEG+R
Sbjct: 404 LLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR 580
Query: 180 INGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVT 239
I G P + LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVT
Sbjct: 581 IAGGPLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 757
Query: 240 GKGPLENLLDHLDDPVANNAWVYATKFVPG 269
GKGPLENL DHL DPV NNAW +AT FVPG
Sbjct: 758 GKGPLENLADHLADPVNNNAWAFATNFVPG 847
>BP036028
Length = 483
Score = 233 bits (595), Expect = 2e-62
Identities = 110/125 (88%), Positives = 120/125 (96%)
Frame = +1
Query: 1 MAATLMAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKY 60
+AATLMAAT AS+ TV+KP+PFLGQ++G+N+N LRDVVSMG GKYTMGN+LWYGPDRVKY
Sbjct: 112 LAATLMAAT-ASTSTVLKPTPFLGQSRGTNTNPLRDVVSMGPGKYTMGNELWYGPDRVKY 288
Query: 61 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEV 120
LGPFSAQTPSYLTGEFP DYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGCITPEV
Sbjct: 289 LGPFSAQTPSYLTGEFPXDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEV 468
Query: 121 LEKWV 125
LEKWV
Sbjct: 469 LEKWV 483
>TC12237 homologue to UP|CB23_LYCES (P27489) Chlorophyll a-b binding protein
13, chloroplast precursor (LHCII type III CAB-13),
partial (43%)
Length = 615
Score = 217 bits (553), Expect = 1e-57
Identities = 106/114 (92%), Positives = 109/114 (94%)
Frame = +3
Query: 157 HAQSILAVLGFQVLLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKV 216
HAQSILAVL F V+LMGLVEGFRINGLPGVGEGNNLYPGG YFDPLGLADDP TFAELKV
Sbjct: 3 HAQSILAVLAFPVVLMGLVEGFRINGLPGVGEGNNLYPGGPYFDPLGLADDPVTFAELKV 182
Query: 217 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANNAWVYATKFVPGS 270
KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLD LDDPVAN+AWVYAT+FVPGS
Sbjct: 183 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDPLDDPVANHAWVYATQFVPGS 344
>AV422060
Length = 463
Score = 167 bits (423), Expect = 2e-42
Identities = 90/144 (62%), Positives = 102/144 (70%), Gaps = 1/144 (0%)
Frame = +1
Query: 1 MAATLMAATTAS-SGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVK 59
MAA+ MA ++ S +G IK SP T+ S T+R + K WYGPDRVK
Sbjct: 49 MAASTMALSSPSVAGKAIKLSP---STQDSGRITMRKTGAKS--KPVSSGSPWYGPDRVK 213
Query: 60 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPE 119
YLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE
Sbjct: 214 YLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 393
Query: 120 VLEKWVRVDFKEPVWFKAGSQIFS 143
+L + V F E VWFK GSQIFS
Sbjct: 394 LLAR-NGVKFGEAVWFKVGSQIFS 462
Score = 32.3 bits (72), Expect = 0.087
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 193 YPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 242
+PG +D GL+ DP TFA+ + E+ + R AM G ++ G
Sbjct: 262 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNG 411
>TC7802 homologue to UP|Q32904 (Q32904) Light harvesting protein, complete
Length = 1268
Score = 136 bits (343), Expect = 3e-33
Identities = 88/217 (40%), Positives = 121/217 (55%), Gaps = 23/217 (10%)
Frame = +1
Query: 65 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGALGCITP 118
S Q+ SYL G PGD+G+D GLS DPE F + + L E+I+GR+AMLGA G I P
Sbjct: 400 SKQSLSYLDGSLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRFAMLGAAGAIAP 576
Query: 119 EVLEKWVRVDFKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGF---------- 167
E+L K + + + WF+ G I G Y + + +A++GF
Sbjct: 577 EILGKAGLIPEETALPWFQTGV-IPPAGTYSYWADSYTLFVLE-MALMGFAEHRRFQDWA 750
Query: 168 ------QVLLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKN 221
+ +GL +G G G+ YPGG +F+PLG D + ELK+KE+KN
Sbjct: 751 KPGSMGKQYFLGLEKGLG-------GSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEVKN 909
Query: 222 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANN 258
GRLAM ++ G+F+Q +VTG GP +NLLDHL DPV NN
Sbjct: 910 GRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNN 1020
>TC8263 homologue to UP|Q41038 (Q41038) Type II chlorophyll a/b binding
protein from photosystem I precursor, partial (98%)
Length = 1199
Score = 124 bits (310), Expect = 2e-29
Identities = 83/210 (39%), Positives = 110/210 (51%), Gaps = 10/210 (4%)
Frame = +3
Query: 69 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVD 128
P +L G PGD+G+D GLS+DPE+ N E++H RWAMLGA G PE L K + +
Sbjct: 297 PPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTK-IGI- 470
Query: 129 FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAV------LGFQVLLMGLVEG---FR 179
P W+ AG Q +Y + + ++ + +L G V F
Sbjct: 471 LNTPSWYTAGEQ-------EYFTDTTTLFIVELIFIGWAEGRRWADILKPGSVNTDPIFP 629
Query: 180 INGLPGVGEGNNLYPGGQYFDPLGL-ADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIV 238
N L G G YPGG +FDPLG + P EL+ KEIKNGRLAM ++ G + Q I
Sbjct: 630 NNKLTGTDVG---YPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIY 800
Query: 239 TGKGPLENLLDHLDDPVANNAWVYATKFVP 268
TG GP++NL HL DP +A V+A F P
Sbjct: 801 TGTGPIDNLFAHLADP--GHATVFAA-FTP 881
>TC8005 similar to UP|Q9XQB2 (Q9XQB2) Chlorophyll a/b binding protein CP29,
complete
Length = 1116
Score = 119 bits (297), Expect = 7e-28
Identities = 102/298 (34%), Positives = 131/298 (43%), Gaps = 44/298 (14%)
Frame = +1
Query: 2 AATLMAATTASSGTVIKPS-PFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKY 60
A AAT++ GT ++ + P LG+ + R +G K GP +
Sbjct: 61 ATATAAATSSFIGTRLRDAQPSLGRVQA------RFGFGIGKKKAAPKKVARPGPGTERP 222
Query: 61 LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAF-----------AKN------------ 97
L A+ P +L G GDYG+D GL E AKN
Sbjct: 223 LWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEF 402
Query: 98 --------------------RALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKA 137
R E+IHGRWAML LG +T E L W A
Sbjct: 403 EDVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGIT--------WQDA 558
Query: 138 GSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVGEGNNLYPGGQ 197
G EG YLG P SI A++ +VL++G +E F+ N + LYPGG
Sbjct: 559 GKVELVEGS-SYLGLPLPF---SITALIWIEVLVIGYIE-FQRNA--ELDPEKRLYPGGS 717
Query: 198 YFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPV 255
+FDPLGLA DP A L++ EIK+ RLAM + GF VQA TGKGPL+N HL DP+
Sbjct: 718 FFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLDNWATHLSDPL 891
>TC8043 similar to PIR|S00443|S00443 chlorophyll a/b-binding protein type I
precursor (cab-6A) - tomato {Lycopersicon
esculentum;}, partial (97%)
Length = 979
Score = 118 bits (296), Expect = 9e-28
Identities = 97/258 (37%), Positives = 118/258 (45%), Gaps = 5/258 (1%)
Frame = +1
Query: 6 MAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTG---KYTMGNDLWYGPDRVKYLG 62
MA+ T S + I P L + S T + GT +++M D G R
Sbjct: 43 MASNTLMS-SAISAFPSLLSSSKSRFATAAPLSCFGTNASSRFSMTADWMPGQPR----- 204
Query: 63 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLE 122
P YL G PGD+G+D L PE + + E+IH RWAML G + PE L
Sbjct: 205 ------PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALG 366
Query: 123 KWVRVDFKEPVWFKAGSQIFSEGG-LDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRIN 181
W KA GG YLGNP V ++ VL + L + VE R
Sbjct: 367 LGN--------WVKAQEWAALPGGQATYLGNP--VPWGTLPTVLAIEFLAISFVEHQRSM 516
Query: 182 GLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFV-QAIVTG 240
YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G
Sbjct: 517 EKD---PEKKKYPGGA-FDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPG 684
Query: 241 KGPLENLLDHLDDPVANN 258
GPLENL HL DP NN
Sbjct: 685 TGPLENLATHLADPWHNN 738
>BP048304
Length = 398
Score = 116 bits (291), Expect = 4e-27
Identities = 58/78 (74%), Positives = 63/78 (80%)
Frame = -3
Query: 192 LYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 251
LYPGG FDPLG ADDP FAEL VK ++NGRLA+FSMFGFFVQAIVT KGPLE+L DHL
Sbjct: 381 LYPGGS-FDPLGPADDPEAFAEL*VKGLQNGRLALFSMFGFFVQAIVTRKGPLEDLADHL 205
Query: 252 DDPVANNAWVYATKFVPG 269
DPV +AW YA FVPG
Sbjct: 204 SDPVYYHAWAYAPHFVPG 151
>CN825719
Length = 679
Score = 114 bits (284), Expect = 2e-26
Identities = 63/156 (40%), Positives = 86/156 (54%), Gaps = 3/156 (1%)
Frame = +2
Query: 52 WYGPDRVKYLGPFSAQT-PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAML 110
WYG +R ++LGP S+ PSYLTGE PGDYG+D AG + DP A K E++H RWAML
Sbjct: 224 WYGENRPRWLGPISSYVYPSYLTGELPGDYGFDIAGFAKDPVALHKYFNFEILHARWAML 403
Query: 111 GALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLG--NPNLVHAQSILAVLGFQ 168
+LG + PE+L+ + F EPVW++ G LDYLG +L +Q ++ + Q
Sbjct: 404 ASLGALIPELLDLFGAFHFVEPVWWRVGYSKLKGDTLDYLGIQGLHLAGSQGVVVIAICQ 583
Query: 169 VLLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGL 204
LLM VG Y G + +PLG+
Sbjct: 584 ALLM-------------VGPEYARYCGSEALEPLGI 652
>TC14513 homologue to UP|Q7M1K9 (Q7M1K9) Chlorophyll a/b-binding protein
(cab-11), complete
Length = 1025
Score = 106 bits (265), Expect = 4e-24
Identities = 77/204 (37%), Positives = 97/204 (46%), Gaps = 14/204 (6%)
Frame = +2
Query: 68 TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRV 127
+P+YL G PGD G+D L+ DPE E+++GRWAMLG G + PEVL +
Sbjct: 233 SPNYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVLTNIGLI 412
Query: 128 DFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVG 187
+ P W+ AG +Y + S L V+ F +L VE R + G
Sbjct: 413 NV--PKWYDAGKA-------EYFAS------SSTLFVIEF--ILFHYVEIRRWQDIKNPG 541
Query: 188 EGNNL--------------YPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFF 233
N YPGG F+PL A E K KE+ NGRLAM + GF
Sbjct: 542 SVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPTE----EAKEKELANGRLAMLAFLGFI 706
Query: 234 VQAIVTGKGPLENLLDHLDDPVAN 257
VQ VTGKGP +NLL HL DP N
Sbjct: 707 VQHNVTGKGPFDNLLQHLSDPWHN 778
Score = 43.5 bits (101), Expect = 4e-05
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +2
Query: 175 VEGFRINGLPGVGEGNNL---YPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFG 231
VE + LPG+ N L PG FDPL LA+DP E+ NGR AM + G
Sbjct: 194 VEAKKGEWLPGLASPNYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWAMLGVAG 373
Query: 232 FFVQAIVTGKG 242
+ ++T G
Sbjct: 374 MLLPEVLTNIG 406
>BP034985
Length = 561
Score = 103 bits (257), Expect = 3e-23
Identities = 52/88 (59%), Positives = 57/88 (64%), Gaps = 8/88 (9%)
Frame = -3
Query: 15 TVIKPSPFLGQTKGSNSNTL-RDVVSMGTGKYTMGN-------DLWYGPDRVKYLGPFSA 66
+ I+ S F GQT N L R G G++TM +WYGPDR KYLGPFS
Sbjct: 265 SAIQQSAFTGQTALKQGNELLRKAGGFGXGRFTMRRTVKSAPQSIWYGPDRPKYLGPFSE 86
Query: 67 QTPSYLTGEFPGDYGWDTAGLSADPEAF 94
Q PSYLTGEFPGDYGWDTAGLSADPE F
Sbjct: 85 QIPSYLTGEFPGDYGWDTAGLSADPETF 2
>TC7909 similar to UP|CB4C_ARATH (Q9S7W1) Chlorophyll a-b binding protein
CP29.3, chloroplast precursor (LHCII protein 4.3)
(LHCB4.3), partial (80%)
Length = 1155
Score = 101 bits (251), Expect = 2e-22
Identities = 90/293 (30%), Positives = 125/293 (41%), Gaps = 49/293 (16%)
Frame = +3
Query: 4 TLMAATTASSGTVIKPSPFLGQTKG---SNSNTLRDVVSMGTGKYTMG---NDLWYGPDR 57
T++ + ++ T S F G G S++ + GT K + P+
Sbjct: 105 TVLPNSAMATATAAATSHFFGTRLGNTTSDAGKFHALFKFGTKKAPPAPKKKQVRVTPEE 284
Query: 58 VKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAF-----------AKN--------- 97
+ + AQ P +L G + GD G+D G + E AKN
Sbjct: 285 DRLVWFPGAQRPEWLDGSYIGDRGFDPLGFARPAEYLQFDYDGLDQNLAKNLAGDIIGTR 464
Query: 98 -----------------------RALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVW 134
R EVIHGRWAMLGALG ++ E L W
Sbjct: 465 VETNEVQPTPFQPYAEVFGIQRFRECEVIHGRWAMLGALGALSVEALTG--------VAW 620
Query: 135 FKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVGEGNNLYP 194
AG +G YLG P SI ++ +VL++G +E F+ N + LYP
Sbjct: 621 QDAGKVELVDGS-SYLGLPLPF---SITTLIWIEVLVIGYIE-FQRNA--ELDPEKRLYP 779
Query: 195 GGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 247
GG++FDPLGLA+DP L++ EIK+ RLAM F +QA VTGKGP+ L
Sbjct: 780 GGKFFDPLGLANDPEEKERLQLAEIKHSRLAMVVFLIFAIQAAVTGKGPISFL 938
>AV773542
Length = 434
Score = 71.2 bits (173), Expect(3) = 5e-21
Identities = 32/43 (74%), Positives = 39/43 (90%)
Frame = -3
Query: 208 PATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDH 250
P FAELKVKE+ +GRLAMFS+FGFFVQA+VTG+GP++NL DH
Sbjct: 342 PDAFAELKVKEL*SGRLAMFSLFGFFVQALVTGQGPIQNLYDH 214
Score = 35.0 bits (79), Expect(3) = 5e-21
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = -2
Query: 177 GFRINGLPGVGEGNNLYPGGQYFDPLGLADDP 208
G+R+ G P + LYPGG FDPL LADDP
Sbjct: 433 GYRLGGGPLAEGLDPLYPGGA-FDPLALADDP 341
Score = 30.4 bits (67), Expect(3) = 5e-21
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -1
Query: 251 LDDPVANNAWVYATKFVPG 269
+ DPVA++AW +A FVPG
Sbjct: 212 VSDPVAHHAWAFAPHFVPG 156
>AV428776
Length = 331
Score = 93.2 bits (230), Expect = 4e-20
Identities = 55/103 (53%), Positives = 61/103 (58%), Gaps = 1/103 (0%)
Frame = +3
Query: 1 MAATLMAATTAS-SGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVK 59
MAA+ MA ++ S +G + SP Q G S G G Y WYGPDRVK
Sbjct: 36 MAASTMALSSPSLAGQALNLSPS-SQEDGRISMRNAATTKKG-GSY---RSPWYGPDRVK 200
Query: 60 YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEV 102
YLGPFS + P Y TGE P DY WDTAGLSADPE FA NR LEV
Sbjct: 201 YLGPFSGEPPFY*TGEIPSDYSWDTAGLSADPETFANNRELEV 329
>BP034928
Length = 550
Score = 64.7 bits (156), Expect(2) = 2e-18
Identities = 35/70 (50%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Frame = -2
Query: 15 TVIKPSPFLGQTKGSNSNTL-RDVVSMGTGKYTMGN-------DLWYGPDRVKYLGPFSA 66
+ I+ S F GQT N L R G G++TM +WYGPDR KYLGPFS
Sbjct: 264 SAIQQSAFTGQTALKQGNELLRKAGGFGKGRFTMRRTVKSAPQSIWYGPDRPKYLGPFSE 85
Query: 67 QTPSYLTGEF 76
Q PSYLTGEF
Sbjct: 84 QIPSYLTGEF 55
Score = 43.1 bits (100), Expect(2) = 2e-18
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = -1
Query: 77 PGDYGWDTAGLSADPEAF 94
PGDYGWDTAGLSADPE F
Sbjct: 55 PGDYGWDTAGLSADPETF 2
>AV774181
Length = 441
Score = 86.3 bits (212), Expect = 5e-18
Identities = 43/52 (82%), Positives = 45/52 (85%)
Frame = -3
Query: 194 PGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 245
PGG FDPL LADDP FAELKVK +KNGRLAMFS+FGFFV AIVTGKGPLE
Sbjct: 421 PGGS-FDPLALADDPEAFAELKVKGLKNGRLAMFSIFGFFVPAIVTGKGPLE 269
Score = 31.2 bits (69), Expect = 0.19
Identities = 19/54 (35%), Positives = 26/54 (47%)
Frame = -3
Query: 68 TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVL 121
TPS G F D L+ DPEAFA+ + + +GR AM G P ++
Sbjct: 433 TPSTPGGSF------DPLALADDPEAFAELKVKGLKNGRLAMFSIFGFFVPAIV 290
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.139 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,193,718
Number of Sequences: 28460
Number of extensions: 52342
Number of successful extensions: 318
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of query: 270
length of database: 4,897,600
effective HSP length: 89
effective length of query: 181
effective length of database: 2,364,660
effective search space: 428003460
effective search space used: 428003460
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0590a.3