TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0588b.6
         (142 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10439 similar to GB|AAO39907.1|28372850|BT003679 At1g67250 {Ar...   283  8e-78
TC10147 weakly similar to GB|AAO39907.1|28372850|BT003679 At1g67...   219  1e-58
TC17575                                                                55  5e-09
BP041404                                                               26  2.3
TC18461 similar to UP|BAC99019 (BAC99019) Makorin ring-zinc-fing...    26  3.0
TC13281                                                                25  3.9

>TC10439 similar to GB|AAO39907.1|28372850|BT003679 At1g67250 {Arabidopsis
           thaliana;}, partial (59%)
          Length = 461

 Score =  283 bits (724), Expect = 8e-78
 Identities = 141/142 (99%), Positives = 141/142 (99%)
 Frame = +1

Query: 1   MEEAAKSIAHQIGGIQNDALRFGLQGVKSDIVGSHPLQSAQESASKINEVMKRQCMVNLY 60
           MEEA KSIAHQIGGIQNDALRFGLQGVKSDIVGSHPLQSAQESASKINEVMKRQCMVNLY
Sbjct: 16  MEEAPKSIAHQIGGIQNDALRFGLQGVKSDIVGSHPLQSAQESASKINEVMKRQCMVNLY 195

Query: 61  GAAFPLKMDLDRQILSRFQRPSGAIPSSMLGLEAFTGSLDDFGFEDYLSDPRESETIRPL 120
           GAAFPLKMDLDRQILSRFQRPSGAIPSSMLGLEAFTGSLDDFGFEDYLSDPRESETIRPL
Sbjct: 196 GAAFPLKMDLDRQILSRFQRPSGAIPSSMLGLEAFTGSLDDFGFEDYLSDPRESETIRPL 375

Query: 121 DMHHGMEVRLGLSKGPVCPSFM 142
           DMHHGMEVRLGLSKGPVCPSFM
Sbjct: 376 DMHHGMEVRLGLSKGPVCPSFM 441


>TC10147 weakly similar to GB|AAO39907.1|28372850|BT003679 At1g67250
           {Arabidopsis thaliana;}, partial (96%)
          Length = 622

 Score =  219 bits (559), Expect = 1e-58
 Identities = 108/142 (76%), Positives = 120/142 (84%)
 Frame = +3

Query: 1   MEEAAKSIAHQIGGIQNDALRFGLQGVKSDIVGSHPLQSAQESASKINEVMKRQCMVNLY 60
           MEEA+K+I HQIGG+ ND LRFG+ GVKSDIVG+HPL+S+  SA    E MKRQC VNLY
Sbjct: 66  MEEASKTIPHQIGGVHNDLLRFGIHGVKSDIVGAHPLESSLASARSTEEAMKRQCKVNLY 245

Query: 61  GAAFPLKMDLDRQILSRFQRPSGAIPSSMLGLEAFTGSLDDFGFEDYLSDPRESETIRPL 120
           GAAFPLK +LDRQILSRFQRP GAIPSSMLGLE  TGSLD FGFED L+DPRES+T  P+
Sbjct: 246 GAAFPLKEELDRQILSRFQRPRGAIPSSMLGLEIVTGSLDHFGFEDCLNDPRESKTSLPV 425

Query: 121 DMHHGMEVRLGLSKGPVCPSFM 142
           DMHHGMEVRLGLSKGPV PS +
Sbjct: 426 DMHHGMEVRLGLSKGPVYPSIV 491


>TC17575 
          Length = 729

 Score = 55.1 bits (131), Expect = 5e-09
 Identities = 25/28 (89%), Positives = 25/28 (89%)
 Frame = +3

Query: 110 DPRESETIRPLDMHHGMEVRLGLSKGPV 137
           DPRE ET  PLDMHHGMEVRLGLSKGPV
Sbjct: 513 DPREPETSLPLDMHHGMEVRLGLSKGPV 596


>BP041404 
          Length = 519

 Score = 26.2 bits (56), Expect = 2.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 12  IGGIQNDALRFGLQGVKSDIVGSHPLQSAQESASKIN 48
           +GG    +L+FGL    S ++  HP ++   S ++I+
Sbjct: 226 VGGSNFLSLQFGLSNSTSMVINHHPFRAIPASRTRIS 116


>TC18461 similar to UP|BAC99019 (BAC99019) Makorin ring-zinc-finger protein
           (Fragment), partial (6%)
          Length = 655

 Score = 25.8 bits (55), Expect = 3.0
 Identities = 12/29 (41%), Positives = 16/29 (54%)
 Frame = +2

Query: 93  EAFTGSLDDFGFEDYLSDPRESETIRPLD 121
           EA    LDDFG ED+     E+E   P++
Sbjct: 125 EAMASGLDDFGHEDF-----ENEEFNPME 196


>TC13281 
          Length = 428

 Score = 25.4 bits (54), Expect = 3.9
 Identities = 15/41 (36%), Positives = 19/41 (45%)
 Frame = +1

Query: 78  FQRPSGAIPSSMLGLEAFTGSLDDFGFEDYLSDPRESETIR 118
           F  PS    S+ L +   T  LD F      +DP  SET+R
Sbjct: 241 FPPPSQPASSTTLRISTNTTELDPFLVTARCADPLPSETVR 363


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,885,084
Number of Sequences: 28460
Number of extensions: 17726
Number of successful extensions: 77
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of query: 142
length of database: 4,897,600
effective HSP length: 81
effective length of query: 61
effective length of database: 2,592,340
effective search space: 158132740
effective search space used: 158132740
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)