TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0588b.2
         (157 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC12318                                                                69  3e-13
TC9963 similar to UP|PRP3_SOYBN (P15642) Repetitive proline-rich...    35  0.008
BP038045                                                               28  0.55
AV778467                                                               28  0.72
TC13585                                                                27  1.2
TC16057 weakly similar to UP|Q9M6R4 (Q9M6R4) Glutathione S-trans...    27  1.6
TC14479 homologue to UP|GLYM_PEA (P34899) Serine hydroxymethyltr...    27  2.1
CN825289                                                               27  2.1
TC15639 weakly similar to UP|BAD05341 (BAD05341) Membrane protei...    27  2.1
AV771284                                                               26  2.7
BP065022                                                               26  2.7
AV777873                                                               26  3.6
TC12191                                                                26  3.6
TC17063 weakly similar to UP|AAS50608 (AAS50608) ABL163Wp, parti...    26  3.6
TC13828 homologue to UP|Q9AXD9 (Q9AXD9) Mago nashi-like protein,...    26  3.6
TC19831 similar to UP|Q9LJ19 (Q9LJ19) ESTs C97134(C52296)  (Hydr...    25  4.7
AV781306                                                               25  4.7
AU088956                                                               25  6.1
TC15914                                                                25  6.1

>TC12318 
          Length = 576

 Score = 69.3 bits (168), Expect = 3e-13
 Identities = 40/102 (39%), Positives = 58/102 (56%)
 Frame = +3

Query: 33  KVTVEIINDLPQPPSTIPLTFHCKSKDDDLGIHTLNHGEVFSFHFKPSIIRFSSTLFFCS 92
           K  V++IN L      + LT H KSKDDDLG+H L+ G+ + + F+ S I  +STLFF +
Sbjct: 156 KTHVKVINSLH---GNLDLTIHIKSKDDDLGVHVLHPGDFYEWGFRTSFI--ASTLFFGT 320

Query: 93  FTWPDKTPSRHYFDVYDQDRDSCKFCSWKMSKTGGCMYEEKT 134
           F W + T     FD+Y ++RD        + KT G M++  T
Sbjct: 321 FQWENVTKR---FDIYKRERDEPTCSV*LVYKTRGAMFQRST 437


>TC9963 similar to UP|PRP3_SOYBN (P15642) Repetitive proline-rich cell wall
           protein 3 precursor, partial (53%)
          Length = 459

 Score = 34.7 bits (78), Expect = 0.008
 Identities = 12/27 (44%), Positives = 16/27 (58%)
 Frame = -3

Query: 103 HYFDVYDQDRDSCKFCSWKMSKTGGCM 129
           H F+ Y  +   CKF  W +S TGGC+
Sbjct: 277 HLFNTYKSNMSPCKF*KWVLSSTGGCL 197


>BP038045 
          Length = 556

 Score = 28.5 bits (62), Expect = 0.55
 Identities = 20/53 (37%), Positives = 24/53 (44%), Gaps = 4/53 (7%)
 Frame = +2

Query: 16 LFALRFDTGVTFSIFPP----KVTVEIINDLPQPPSTIPLTFHCKSKDDDLGI 64
          LF LR    + FS F      +VTVE+ ND P     IPLT    S    L +
Sbjct: 8  LFLLRLAIMLFFSYFKDLVGREVTVELKNDWPSEEPCIPLTSTSTSSSKTLAL 166


>AV778467 
          Length = 491

 Score = 28.1 bits (61), Expect = 0.72
 Identities = 24/71 (33%), Positives = 31/71 (42%), Gaps = 3/71 (4%)
 Frame = -1

Query: 26  TFSIFPPKVTVEIINDLPQPPSTIPLTFHCKSKDDDLGIHTLNH-GEVFSFH--FKPSII 82
           T S+F  K T  +I +    PS + + F  + KD  +    L H       H  FKP   
Sbjct: 407 TLSLFFCKSTRALIREPLY*PSDVHVDFQSQ*KDYSI*YFILKHLSRSLIVH*CFKPWPT 228

Query: 83  RFSSTLFFCSF 93
            FS  L FCSF
Sbjct: 227 LFSFFLLFCSF 195


>TC13585 
          Length = 519

 Score = 27.3 bits (59), Expect = 1.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 52  TFHCKSKDDDLGIHTLNHGEVFSFHFKPSIIRFSSTLFFCS 92
           ++  + K  DLGIH +  GE FS  F PS+      ++ CS
Sbjct: 348 SYRIRHKP*DLGIHLVCVGERFSHVFDPSL----HDIYLCS 458


>TC16057 weakly similar to UP|Q9M6R4 (Q9M6R4) Glutathione S-transferase,
           partial (37%)
          Length = 590

 Score = 26.9 bits (58), Expect = 1.6
 Identities = 11/29 (37%), Positives = 15/29 (50%)
 Frame = -3

Query: 42  LPQPPSTIPLTFHCKSKDDDLGIHTLNHG 70
           +P PPS  P ++  +     LG H  NHG
Sbjct: 225 IPLPPSATPRSYQKQYPGTQLGHHRKNHG 139


>TC14479 homologue to UP|GLYM_PEA (P34899) Serine hydroxymethyltransferase,
            mitochondrial precursor  (Serine methylase) (Glycine
            hydroxymethyltransferase) (SHMT) , complete
          Length = 1874

 Score = 26.6 bits (57), Expect = 2.1
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
 Frame = -1

Query: 65   HTLNH-GEVFSFHFKPSII-----RFSSTLFFCSFTWPDK 98
            HT  H GE     F+  +I     R  S LF CS  WP K
Sbjct: 1511 HTPQHRGEALQSLFESKMIPELWPRSPSILFLCSLPWPSK 1392


>CN825289 
          Length = 793

 Score = 26.6 bits (57), Expect = 2.1
 Identities = 20/69 (28%), Positives = 28/69 (39%), Gaps = 1/69 (1%)
 Frame = +1

Query: 43  PQPPSTIPLTFHCKSKDDDLGIHTLNHGEVFSFHFKPSIIRFSSTLFFCS-FTWPDKTPS 101
           P PP  + LT HC+ +   L                PS++R SST   CS  +W ++   
Sbjct: 37  PPPPQWLALTAHCRRRHRPL----------------PSLLRSSST---CSRLSWRNQEHC 159

Query: 102 RHYFDVYDQ 110
              FD   Q
Sbjct: 160 ESGFDTLSQ 186


>TC15639 weakly similar to UP|BAD05341 (BAD05341) Membrane protein-like,
           partial (25%)
          Length = 556

 Score = 26.6 bits (57), Expect = 2.1
 Identities = 11/21 (52%), Positives = 16/21 (75%)
 Frame = -3

Query: 38  IINDLPQPPSTIPLTFHCKSK 58
           I++D+P PPSTI LT   K++
Sbjct: 299 IMSDMPSPPSTIALTNIVKAR 237


>AV771284 
          Length = 239

 Score = 26.2 bits (56), Expect = 2.7
 Identities = 14/32 (43%), Positives = 16/32 (49%)
 Frame = -1

Query: 89  FFCSFTWPDKTPSRHYFDVYDQDRDSCKFCSW 120
           FFC FT+P K  S+      D DR    FC W
Sbjct: 110 FFCHFTFPHKYLSKDKEIFNDVDR----FCVW 27


>BP065022 
          Length = 489

 Score = 26.2 bits (56), Expect = 2.7
 Identities = 10/23 (43%), Positives = 15/23 (64%)
 Frame = -2

Query: 56 KSKDDDLGIHTLNHGEVFSFHFK 78
          K  DD++ I   +H +VFS HF+
Sbjct: 98 KRVDDNVSIDYYHHADVFSLHFQ 30


>AV777873 
          Length = 568

 Score = 25.8 bits (55), Expect = 3.6
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +1

Query: 88  LFFCSFTWPDKTPSRHYFDVYDQDRDSCKFCSWKMSKTGGCMYEEKTG 135
           L FC+ TW D+ P       Y+Q       C W  SK   C ++   G
Sbjct: 163 LRFCNDTWKDRRP-------YEQS------CHWVYSKHWQCWWQFSDG 267


>TC12191 
          Length = 683

 Score = 25.8 bits (55), Expect = 3.6
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 66  TLNHGEVFSFH-FKPSIIRFSSTLFFCSF 93
           T NH + FSFH F  ++ ++ S  F C F
Sbjct: 472 TQNHFQXFSFHLFSSTLFQWRSNXFRCYF 386


>TC17063 weakly similar to UP|AAS50608 (AAS50608) ABL163Wp, partial (19%)
          Length = 616

 Score = 25.8 bits (55), Expect = 3.6
 Identities = 9/24 (37%), Positives = 14/24 (57%)
 Frame = +2

Query: 104 YFDVYDQDRDSCKFCSWKMSKTGG 127
           +F  + +DR SC+ C W+ S   G
Sbjct: 443 HFQAFWEDRHSCQRCCWEFSSFCG 514


>TC13828 homologue to UP|Q9AXD9 (Q9AXD9) Mago nashi-like protein, partial
           (89%)
          Length = 599

 Score = 25.8 bits (55), Expect = 3.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 115 CKFCSWKMSKTGGC 128
           C+FCSW   ++G C
Sbjct: 209 CRFCSWSCWRSGAC 168


>TC19831 similar to UP|Q9LJ19 (Q9LJ19) ESTs C97134(C52296)
           (Hydroxymethylglutaryl-CoA lyase) (HMG-CoA lyase) (HL)
           (3-hydroxy-3-methylglutarate-CoA lyase) , partial (19%)
          Length = 488

 Score = 25.4 bits (54), Expect = 4.7
 Identities = 7/26 (26%), Positives = 13/26 (49%)
 Frame = +1

Query: 118 CSWKMSKTGGCMYEEKTGRHDICVPW 143
           C W+    G C++ ++    + C PW
Sbjct: 88  CHWECCHRGCCLHADRARSENPCGPW 165


>AV781306 
          Length = 525

 Score = 25.4 bits (54), Expect = 4.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 26 TFSIFPPKVTVEIINDLPQP 45
          TFSI  PK ++ I  DLP+P
Sbjct: 74 TFSISKPKNSITIDQDLPRP 133


>AU088956 
          Length = 330

 Score = 25.0 bits (53), Expect = 6.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 113 DSCKFCSWKMSKTGG 127
           DSCK+CS KM    G
Sbjct: 125 DSCKYCSLKMRNVAG 81


>TC15914 
          Length = 498

 Score = 25.0 bits (53), Expect = 6.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 43  PQPPSTIPLTFHCKSKDDDLGIHTLNHGEVF 73
           P PP+  P+ FH   +   L +H  +  ++F
Sbjct: 130 PNPPAYFPILFHHCPEQSHLHLHQKDTAKIF 38


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.327    0.141    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,001,207
Number of Sequences: 28460
Number of extensions: 72987
Number of successful extensions: 520
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of query: 157
length of database: 4,897,600
effective HSP length: 83
effective length of query: 74
effective length of database: 2,535,420
effective search space: 187621080
effective search space used: 187621080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)