TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0588b.10
         (328 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV423488                                                               51  2e-07
TC15869                                                                33  0.085
TC8350 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, par...    30  0.55
BP039346                                                               28  2.1
BP048490                                                               28  2.1
CN825477                                                               28  2.7
TC15459 similar to UP|LB37_ARATH (Q9FN11) LOB domain protein 37,...    28  2.7
TC12704 UP|CAE45596 (CAE45596) S-receptor kinase-like protein 3,...    27  3.6
AW720191                                                               27  4.7
TC18897 weakly similar to UP|Q9XEV3 (Q9XEV3) TIA-1 related prote...    27  4.7
TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, part...    27  6.1
TC12493 similar to UP|Q9LP77 (Q9LP77) T1N15.9, partial (35%)           27  6.1
TC16468                                                                26  8.0
TC18669 similar to UP|Q93Y39 (Q93Y39) ATP-dependent RNA helicase...    26  8.0
AV416351                                                               26  8.0
TC17291 similar to UP|Q8LG11 (Q8LG11) Proline-rich cell wall pro...    26  8.0
TC8852 similar to UP|O24046 (O24046) 2-dehydro-3-deoxyphosphohep...    26  8.0
TC9746                                                                 26  8.0

>AV423488 
          Length = 487

 Score = 51.2 bits (121), Expect = 2e-07
 Identities = 34/107 (31%), Positives = 50/107 (45%), Gaps = 13/107 (12%)
 Frame = +3

Query: 38  PEEPEFSTQRGLDDI--------DLEESGKKRTK-----WSGKDNILLLQSWLNVSTDRV 84
           PE PEFSTQ  L  +        + E++  K  K     WS   N++L+  W+N  T  V
Sbjct: 168 PEFPEFSTQMTLGGMTAANQFTPNQEDTTPKSKKTHSPAWSTAQNLVLISRWINRGTSSV 347

Query: 85  GGNEQKSDLFWNKIRAQYEEYRDDASPSRTWLSLKSHFNKLNADLQK 131
            G  QK + FW  I A+Y        P R  ++ ++ +N +N  L K
Sbjct: 348 VGKNQKGETFWRDI-AEYCNEHCSFDPPRDGIACRNRWNYMNKILGK 485


>TC15869 
          Length = 818

 Score = 32.7 bits (73), Expect = 0.085
 Identities = 22/57 (38%), Positives = 32/57 (55%), Gaps = 3/57 (5%)
 Frame = +1

Query: 32  TQCEAMPEEPEFST---QRGLDDIDLEESGKKRTKWSGKDNILLLQSWLNVSTDRVG 85
           +Q E +P +P+ S    +   +DI  EE+ +K T+ SGKD   L  + LNVS D  G
Sbjct: 274 SQHENLPVQPDCSEIHDESRDEDISSEETREKATRRSGKDEENLTLAGLNVSEDFEG 444


>TC8350 similar to UP|Q9LEB4 (Q9LEB4) RNA binding protein 45, partial (38%)
          Length = 735

 Score = 30.0 bits (66), Expect = 0.55
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 4   PNNPQYCMYPPQYQAPPTGSSSSSKVSSTQCEAMPEE 40
           P  P Y M PPQ QAPP    + +  +  Q  A  EE
Sbjct: 184 PQQPPYAMMPPQAQAPPPHMWAPNVQTPQQQPATAEE 294


>BP039346 
          Length = 470

 Score = 28.1 bits (61), Expect = 2.1
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -1

Query: 3   YPNNPQYCMYPPQYQAPPTGSSSSSKVSSTQCEAMPEEP 41
           +PN P++ ++ PQ    P+ SSSSS  SS+   A P+ P
Sbjct: 440 FPNPPKHRLHHPQ----PSSSSSSS--SSSSSSAAPKHP 342


>BP048490 
          Length = 452

 Score = 28.1 bits (61), Expect = 2.1
 Identities = 22/82 (26%), Positives = 38/82 (45%), Gaps = 3/82 (3%)
 Frame = +3

Query: 206 SSDRSASIKGDEYEATQPATRPLGKKNQKRKAKVGDT---ASSDLDYVPNSEMIAIGKAK 262
           SSD  +S   DE   ++PAT  + K +  +K+   D+    SSD D     + + + ++ 
Sbjct: 21  SSDDESSESSDEENDSKPATTTVAKPSAVKKSASSDSDDEDSSDSDSEVKKDKMDVDESD 200

Query: 263 LGFLASFEKLKTEKLEVKKEKN 284
               +  E  K+ K   KK K+
Sbjct: 201 SSEDSDEEDEKSTKTPQKKVKD 266


>CN825477 
          Length = 466

 Score = 27.7 bits (60), Expect = 2.7
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +1

Query: 3   YPNNPQYCMYPPQYQAPPTGSSSSS 27
           YP  PQY   PPQY  PP    +SS
Sbjct: 163 YP--PQYAPPPPQYSQPPPPQKNSS 231


>TC15459 similar to UP|LB37_ARATH (Q9FN11) LOB domain protein 37, partial
           (46%)
          Length = 1097

 Score = 27.7 bits (60), Expect = 2.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 13  PPQYQAPPTGSSSSSKVSSTQCEAMP 38
           PP+++A P  SS +S  + T C + P
Sbjct: 208 PPKHKATPPSSSPNSSAAPTSCPSFP 285


>TC12704 UP|CAE45596 (CAE45596) S-receptor kinase-like protein 3, complete
          Length = 2481

 Score = 27.3 bits (59), Expect = 3.6
 Identities = 9/19 (47%), Positives = 12/19 (62%)
 Frame = +1

Query: 134  GCHTKAVNHWKSGHSDKDI 152
            G  T+ +NHWK    D+DI
Sbjct: 1345 GIETRIINHWKDKRGDEDI 1401


>AW720191 
          Length = 508

 Score = 26.9 bits (58), Expect = 4.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 5   NNPQYCMYPPQYQAPPTGSSSSSKVSSTQCEAMPEEP 41
           N  + C  PP   APP+ S+ SS  + +     P  P
Sbjct: 295 NLSRRCEKPPPPNAPPSSSAKSSSAAPSATSHTPSNP 405


>TC18897 weakly similar to UP|Q9XEV3 (Q9XEV3) TIA-1 related protein, partial
           (5%)
          Length = 481

 Score = 26.9 bits (58), Expect = 4.7
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 19  PPTGSSSSSKVSSTQCEAMPEEPEFSTQRGLDDIDL-EESGKKRTKWSGK 67
           P  GSS +S    +  E+ P +PE   +R    IDL EE G+KR   S K
Sbjct: 257 PMAGSSPASSSKRSSSESTPLQPETEYRRE-PRIDLVEERGRKRDICSQK 111


>TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, partial (22%)
          Length = 505

 Score = 26.6 bits (57), Expect = 6.1
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +3

Query: 4   PNNPQYCMYPPQYQAPPTGSSSSSKVSSTQCEAMPEEPEFSTQRGL 49
           P+ P     PP   + P G+  SS  ++T   + P  P   T+  L
Sbjct: 294 PSPPPTSASPPPPSSTPNGTPPSSSPATTPSPSRPSTPSSPTRASL 431


>TC12493 similar to UP|Q9LP77 (Q9LP77) T1N15.9, partial (35%)
          Length = 837

 Score = 26.6 bits (57), Expect = 6.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 1   MSYPNNPQYCMYPPQYQAP 19
           ++Y  N  +C+YPP  +AP
Sbjct: 108 LNYSQNHSHCLYPPSPEAP 52


>TC16468 
          Length = 807

 Score = 26.2 bits (56), Expect = 8.0
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 300 MEDTSEMNEVQLATHQRLVEFAMKELG 326
           +EDT E   VQL T Q L+   +KELG
Sbjct: 159 LEDTQEGYIVQLETEQMLLLSQIKELG 239


>TC18669 similar to UP|Q93Y39 (Q93Y39) ATP-dependent RNA helicase
           (Fragment), partial (3%)
          Length = 461

 Score = 26.2 bits (56), Expect = 8.0
 Identities = 22/57 (38%), Positives = 29/57 (50%)
 Frame = -2

Query: 229 GKKNQKRKAKVGDTASSDLDYVPNSEMIAIGKAKLGFLASFEKLKTEKLEVKKEKNK 285
           GKK +K+K    D A S  D VP  E         G +   E++KTE  + KK+KNK
Sbjct: 148 GKKLKKQKHDGVDGARSS-DDVPEVETD-------GEIVKDEEVKTEVKKKKKKKNK 2


>AV416351 
          Length = 428

 Score = 26.2 bits (56), Expect = 8.0
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +3

Query: 2   SYPNNPQYCMYPPQYQAPPTGSSSSSKVSSTQCEAMPEEPEFSTQRGLDDIDLEESGKKR 61
           S P NP+     P    PP+ SSS  K +S     +P      + + +   DL      +
Sbjct: 81  SPPRNPR-----PPPPPPPSSSSSPEKKNSPINHVLPSPTPHQSPKTIRQSDLSPMNSPK 245

Query: 62  TKWSGK 67
           +K S +
Sbjct: 246 SKLSAR 263


>TC17291 similar to UP|Q8LG11 (Q8LG11) Proline-rich cell wall protein-like,
           partial (33%)
          Length = 429

 Score = 26.2 bits (56), Expect = 8.0
 Identities = 10/15 (66%), Positives = 12/15 (79%)
 Frame = +3

Query: 13  PPQYQAPPTGSSSSS 27
           PP Y+APP+ SS SS
Sbjct: 120 PPMYRAPPSSSSPSS 164


>TC8852 similar to UP|O24046 (O24046) 2-dehydro-3-deoxyphosphoheptonate
           aldolase precursor  , partial (31%)
          Length = 808

 Score = 26.2 bits (56), Expect = 8.0
 Identities = 18/67 (26%), Positives = 28/67 (40%), Gaps = 9/67 (13%)
 Frame = -2

Query: 155 TARQLYHVDTGKDFKHENEWRLVKDEPKWKGTFMTTSST---------RQKKSGDGVYAT 205
           ++++ +H + GK F     WR V+D+P+  G    T S          RQ   G G    
Sbjct: 570 SSQRSHHPEGGKRFP----WRPVRDDPQASGLLRRTRSAGTRRGFGARRQAPPGSGTQVA 403

Query: 206 SSDRSAS 212
           +   S S
Sbjct: 402 AKPSSIS 382


>TC9746 
          Length = 637

 Score = 26.2 bits (56), Expect = 8.0
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +2

Query: 3   YPNNPQYCMYPPQYQAPPTGSSSSSKV---SSTQCEAMPEEPEFSTQRG 48
           +P++P     PP   +PP  SSS+  V   SST          FS+ RG
Sbjct: 464 HPHSPSPRSPPPASPSPPYFSSSAPPVSCPSSTATSLCQSSAAFSSPRG 610


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.310    0.127    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,635,344
Number of Sequences: 28460
Number of extensions: 76236
Number of successful extensions: 455
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of query: 328
length of database: 4,897,600
effective HSP length: 91
effective length of query: 237
effective length of database: 2,307,740
effective search space: 546934380
effective search space used: 546934380
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)