TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0587.6
         (1079 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP043858                                                              318  2e-87
TC10731 similar to PIR|T51557|T51557 Exportin1 (XPO1) protein - ...   299  2e-81
BP066811                                                              131  2e-58
TC14571 homologue to PIR|T51557|T51557 Exportin1 (XPO1) protein ...    68  9e-12
TC17960 similar to UP|Q8H183 (Q8H183) Beta-ureidopropionase (N-c...    29  4.5
TC10699 similar to UP|MAD2_ARATH (Q9LU93) Mitotic spindle checkp...    29  4.5
AI967470                                                               28  7.7

>BP043858 
          Length = 546

 Score =  318 bits (816), Expect = 2e-87
 Identities = 158/158 (100%), Positives = 158/158 (100%)
 Frame = +3

Query: 1   MAAEKLRDLSQPIDVPLLDATVAAFYGTGSKEQRTAADQILRDLQNNPDMWLQVMHILQN 60
           MAAEKLRDLSQPIDVPLLDATVAAFYGTGSKEQRTAADQILRDLQNNPDMWLQVMHILQN
Sbjct: 72  MAAEKLRDLSQPIDVPLLDATVAAFYGTGSKEQRTAADQILRDLQNNPDMWLQVMHILQN 251

Query: 61  TQNLNTKFFALQVLEGVIKYRWNALPLEQRDGMKNFISDIIVQLSGNEASFRMERLYVNK 120
           TQNLNTKFFALQVLEGVIKYRWNALPLEQRDGMKNFISDIIVQLSGNEASFRMERLYVNK
Sbjct: 252 TQNLNTKFFALQVLEGVIKYRWNALPLEQRDGMKNFISDIIVQLSGNEASFRMERLYVNK 431

Query: 121 LNIILVQILKHEWPLRWRSFIPDLVSAAKTSETICENC 158
           LNIILVQILKHEWPLRWRSFIPDLVSAAKTSETICENC
Sbjct: 432 LNIILVQILKHEWPLRWRSFIPDLVSAAKTSETICENC 545


>TC10731 similar to PIR|T51557|T51557 Exportin1 (XPO1) protein - Arabidopsis
            thaliana (fragment) {Arabidopsis thaliana;}, partial
            (14%)
          Length = 595

 Score =  299 bits (765), Expect = 2e-81
 Identities = 149/149 (100%), Positives = 149/149 (100%)
 Frame = +3

Query: 931  EIFAVLTDTFHKPGFKLHVLVLQHLFCLAETGALTEPLWDAATNPYPYPSNAAFVLEYTI 990
            EIFAVLTDTFHKPGFKLHVLVLQHLFCLAETGALTEPLWDAATNPYPYPSNAAFVLEYTI
Sbjct: 3    EIFAVLTDTFHKPGFKLHVLVLQHLFCLAETGALTEPLWDAATNPYPYPSNAAFVLEYTI 182

Query: 991  KLLSTSFPNMTAAEVTQFVNGLFESTNDLSTFKNHIRDFLVQSKEFSAQDNKDLYAEEAA 1050
            KLLSTSFPNMTAAEVTQFVNGLFESTNDLSTFKNHIRDFLVQSKEFSAQDNKDLYAEEAA
Sbjct: 183  KLLSTSFPNMTAAEVTQFVNGLFESTNDLSTFKNHIRDFLVQSKEFSAQDNKDLYAEEAA 362

Query: 1051 AQRERERQRMLSVPGLIAPSELQDEMLDS 1079
            AQRERERQRMLSVPGLIAPSELQDEMLDS
Sbjct: 363  AQRERERQRMLSVPGLIAPSELQDEMLDS 449


>BP066811 
          Length = 460

 Score =  131 bits (329), Expect(3) = 2e-58
 Identities = 64/64 (100%), Positives = 64/64 (100%)
 Frame = +3

Query: 9   LSQPIDVPLLDATVAAFYGTGSKEQRTAADQILRDLQNNPDMWLQVMHILQNTQNLNTKF 68
           LSQPIDVPLLDATVAAFYGTGSKEQRTAADQILRDLQNNPDMWLQVMHILQNTQNLNTKF
Sbjct: 78  LSQPIDVPLLDATVAAFYGTGSKEQRTAADQILRDLQNNPDMWLQVMHILQNTQNLNTKF 257

Query: 69  FALQ 72
           FALQ
Sbjct: 258 FALQ 269



 Score =  113 bits (282), Expect(3) = 2e-58
 Identities = 56/58 (96%), Positives = 57/58 (97%)
 Frame = +2

Query: 71  LQVLEGVIKYRWNALPLEQRDGMKNFISDIIVQLSGNEASFRMERLYVNKLNIILVQI 128
           +QVLEGVIKYRWNALPLEQRDGMKNFISDI VQLSGNEASFRMERLYVNKLNIILVQI
Sbjct: 287 IQVLEGVIKYRWNALPLEQRDGMKNFISDIXVQLSGNEASFRMERLYVNKLNIILVQI 460



 Score = 21.2 bits (43), Expect(3) = 2e-58
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 1  MAAEKLRDLSQP 12
          MAAEKLRD   P
Sbjct: 55 MAAEKLRDCPNP 90


>TC14571 homologue to PIR|T51557|T51557 Exportin1 (XPO1) protein - Arabidopsis
            thaliana (fragment) {Arabidopsis thaliana;}, partial (3%)
          Length = 677

 Score = 67.8 bits (164), Expect = 9e-12
 Identities = 32/37 (86%), Positives = 36/37 (96%)
 Frame = +2

Query: 1043 DLYAEEAAAQRERERQRMLSVPGLIAPSELQDEMLDS 1079
            DLYAEEAAAQRERER RML++PGLIAP+ELQDEM+DS
Sbjct: 2    DLYAEEAAAQRERERPRMLAIPGLIAPNELQDEMVDS 112


>TC17960 similar to UP|Q8H183 (Q8H183) Beta-ureidopropionase
           (N-carbamyl-beta-alanine amidohydrolase)  (At5g64370) ,
           partial (29%)
          Length = 455

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = -3

Query: 671 KWLEIIGQARQNVDFL--KDHDVI--RTVLNILQTNTSVASSLGTYF 713
           KW   I  ++Q VDFL     ++I  + V  ++ T+ SVA  LG +F
Sbjct: 207 KWFSTIKPSKQAVDFLIVMGFEIILEKMVKRVVATDRSVAGGLGLFF 67


>TC10699 similar to UP|MAD2_ARATH (Q9LU93) Mitotic spindle checkpoint
           protein MAD2, partial (95%)
          Length = 975

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
 Frame = +2

Query: 75  EGVIKYRWNALP--LEQRDGMKNFISDIIVQLSGNEASFRMERLYVNKLNIILVQILKHE 132
           E  +K +   LP  L + +G+K+FIS++  QLS    S +++R+ +  ++    ++L+  
Sbjct: 140 ESFVKVKKYGLPMLLTEDEGVKSFISNLTAQLSEWLESGKLQRVVLVIMSKATGEVLE-- 313

Query: 133 WPLRWR-------SFIPDLVSAAKTSETICENCMAILKLLSEEV 169
              RW          +   VS  K+ + I     AI+  ++  +
Sbjct: 314 ---RWNFSIETDSEVVEKSVSREKSDKEIMREIQAIMSQIASSI 436


>AI967470 
          Length = 356

 Score = 28.1 bits (61), Expect = 7.7
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 146 SAAKTSETICE---NCMAILKLLSEEVFDFSRGEMTQQK 181
           S AKTS+T C    NC  IL  LSE +  ++   +T Q+
Sbjct: 240 SEAKTSKTDCSLSSNCGKILASLSEALIHYATSSITPQQ 356


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,729,600
Number of Sequences: 28460
Number of extensions: 222486
Number of successful extensions: 1149
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of query: 1079
length of database: 4,897,600
effective HSP length: 100
effective length of query: 979
effective length of database: 2,051,600
effective search space: 2008516400
effective search space used: 2008516400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)