TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0587.12
         (583 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG662073                                                              162  2e-45
AV768678                                                               90  1e-18
BP033343                                                               85  4e-17
TC8377 similar to UP|Q9M3Z7 (Q9M3Z7) Alpha-fucosidase  , partial...    29  1.8
TC10420                                                                28  4.1
BP047504                                                               28  5.4
TC9281 similar to UP|O82167 (O82167) T4C15.7 protein (At2g35260/...    28  5.4
TC15910 similar to UP|Q9AR64 (Q9AR64) Urease accessory protein G...    28  5.4
BP053696                                                               27  7.0
TC19383                                                                27  7.0
TC9563                                                                 27  7.0
AV775900                                                               27  7.0

>BG662073 
          Length = 501

 Score =  162 bits (409), Expect(2) = 2e-45
 Identities = 73/126 (57%), Positives = 90/126 (70%)
 Frame = +1

Query: 323 IDAGGSNLPIGGTNDGEFWIDLPCDDDDQREFVKHGDLKGAKLYVHVKPALGGTFTDLAM 382
           I   G+NLP     DG +W+DLP D D+ +E VK GDL+  + YVHVKP LGGTFTDLAM
Sbjct: 37  IAPNGTNLPQDPHTDGAYWLDLPADADN-KERVKKGDLQSFESYVHVKPMLGGTFTDLAM 213

Query: 383 WVFCPFNGPSTLKFGITSIAFSKVGEHVGDWEHFTLRICNFSGELWSIYFSQHSGGKWVD 442
           WVF PFNGP+  K    ++   ++GEHVGDWEH TLRI NF G+LW +YF+QHS G WVD
Sbjct: 214 WVFYPFNGPARAKVEFFNVKLGRIGEHVGDWEHVTLRISNFDGQLWKVYFAQHSKGAWVD 393

Query: 443 SYDLEY 448
           S  +E+
Sbjct: 394 SSQIEF 411



 Score = 38.1 bits (87), Expect(2) = 2e-45
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = +2

Query: 450 NGNKAIVYSSKSGHASFPHPGTYIQ 474
           N N+ +VYSS  GHAS+PHPG  +Q
Sbjct: 425 NVNRPVVYSSLHGHASYPHPGLILQ 499


>AV768678 
          Length = 429

 Score = 89.7 bits (221), Expect = 1e-18
 Identities = 51/124 (41%), Positives = 73/124 (58%), Gaps = 1/124 (0%)
 Frame = +3

Query: 47  GQGFASGIINLGELEVCSVTSFELVWNSNVMVEMRKAVAFYKPVGIPDGFHVLSHYCQPS 106
           G GFASGII+LG+++V  +++F+ VW +           F++P  +P+GF  L  Y QP+
Sbjct: 99  GDGFASGIIDLGDVKVSQISTFKKVWTTLEGGPDNAGATFFEPTELPEGFFTLGFYSQPN 278

Query: 107 YNKPLWGFVLVAREVEACSSEKIEIGDQNKLPALRKPLDYTLVWCSNAGSKEI-VTSSAY 165
            NKP++G VLVA++     +E           AL+KP+DYTLVW SN  SK+I      Y
Sbjct: 279 -NKPVFGSVLVAKDDSPSDNE-----------ALKKPVDYTLVWSSN--SKKIKQDKDGY 416

Query: 166 FWLP 169
            WLP
Sbjct: 417 VWLP 428


>BP033343 
          Length = 481

 Score = 84.7 bits (208), Expect = 4e-17
 Identities = 39/49 (79%), Positives = 41/49 (83%)
 Frame = -2

Query: 535 ELDKIINALPFRLRISFVNLVKKLPVELYGEEGPTGPKEKNNWIGDERW 583
           ELDKIINALP  L+ S  NL  + PVELYGEEGPTGPKEKNNWIGDERW
Sbjct: 480 ELDKIINALPKMLQHSMKNLFNQFPVELYGEEGPTGPKEKNNWIGDERW 334


>TC8377 similar to UP|Q9M3Z7 (Q9M3Z7) Alpha-fucosidase  , partial (83%)
          Length = 1014

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 23/71 (32%), Positives = 33/71 (46%)
 Frame = +1

Query: 210 QILDVSSEIPEFPFSVWSLRPCDRGMMGKGVSVGTFFCSSCVNMGEQLPVVCLKNLNPVL 269
           Q+LDV+ +   FP   + +RP  RG  G GV +G    S C       PV  L+  + V 
Sbjct: 121 QVLDVNGD-SIFPGGRYYIRPAIRGPPGGGVRLGKTGDSDC-------PVTALQEYSEVK 276

Query: 270 PAMPCLQQIHA 280
             +P   +I A
Sbjct: 277 NGIPVRFRIAA 309


>TC10420 
          Length = 871

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 15/49 (30%), Positives = 25/49 (50%)
 Frame = -1

Query: 403 FSKVGEHVGDWEHFTLRICNFSGELWSIYFSQHSGGKWVDSYDLEYING 451
           F +   H    E+ T  + N++     I+F Q + G +  + DL+YING
Sbjct: 307 FERQATHKNPLENTTFSLNNYN----PIFFCQSAYGTFFRNQDLQYING 173


>BP047504 
          Length = 486

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 8   EIKCQFHSHSPSTVFPSFSTTPMASRSVYSVIVHVCV 44
           EI+C  H+ S  T F  FS    ++ S+ S +V +C+
Sbjct: 228 EIRCHHHTLSLYTHFKYFSNIVFSTWSLSSCVVSICM 118


>TC9281 similar to UP|O82167 (O82167) T4C15.7 protein (At2g35260/T4C15.7),
           partial (31%)
          Length = 618

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 110 PLWGFVLVAREVEACSSEKIEIGDQN 135
           P WGF  +  E    S+ K+E G+QN
Sbjct: 605 PTWGFYFILLENTTYSNSKLENGEQN 528


>TC15910 similar to UP|Q9AR64 (Q9AR64) Urease accessory protein G, partial
           (88%)
          Length = 1061

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 8   EIKCQFHSHSPSTVFPSFSTTPMASRSVYSVIVHVCV 44
           EI+C  H+ S  T F  FS    ++ S+ S +V +C+
Sbjct: 884 EIRCHHHTLSLYTHFKYFSNIVFSTWSLSSCVVSICM 994


>BP053696 
          Length = 509

 Score = 27.3 bits (59), Expect = 7.0
 Identities = 11/17 (64%), Positives = 12/17 (69%)
 Frame = -2

Query: 284 HYGPTVYFHPEEVYLPS 300
           H GPTVYF  EE Y+ S
Sbjct: 91  HIGPTVYFLTEEAYVAS 41


>TC19383 
          Length = 558

 Score = 27.3 bits (59), Expect = 7.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 128 KIEIGDQNKLPALRKPLDYTLVWC 151
           +IE   Q KLP LR P D + +WC
Sbjct: 357 QIEPFFQ*KLPPLRYPFDQSTIWC 428


>TC9563 
          Length = 757

 Score = 27.3 bits (59), Expect = 7.0
 Identities = 16/54 (29%), Positives = 30/54 (54%)
 Frame = -1

Query: 448 YINGNKAIVYSSKSGHASFPHPGTYIQGSSKLGIGIRNDACSSNLYVDSSIQYE 501
           +IN  K +V  + +   + PHP   I+ + K  I  ++ AC+   Y+ S++QY+
Sbjct: 589 FINSTKHLVL*NITSK*TIPHPP*VIRQNFKKLISRKHYACTD--YIISAVQYQ 434


>AV775900 
          Length = 523

 Score = 27.3 bits (59), Expect = 7.0
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -2

Query: 14  HSHSPSTVFPSFSTTP--MASRSVYSVIVHVCVITGQGFASGIINL-GEL 60
           H HS   + PSF T P   A   +  ++  +C+I    F+S  + L GEL
Sbjct: 258 HGHSDLLLLPSFVTQPASQAGEGILLLLAVLCLIRVNRFSSERVKLVGEL 109


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.138    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,504,174
Number of Sequences: 28460
Number of extensions: 199712
Number of successful extensions: 885
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of query: 583
length of database: 4,897,600
effective HSP length: 95
effective length of query: 488
effective length of database: 2,193,900
effective search space: 1070623200
effective search space used: 1070623200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)