TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0587.1
         (134 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV770031                                                               29  0.31
CB828260                                                               27  1.5
TC15745                                                                24  10.0

>AV770031 
          Length = 521

 Score = 28.9 bits (63), Expect = 0.31
 Identities = 15/49 (30%), Positives = 27/49 (54%), Gaps = 7/49 (14%)
 Frame = -3

Query: 19  LSSFWLLA-------EMDVFYAAVETLSNPTFNGKAMAVGSMSMISTSS 60
           +S+FW L+       E  +F  A+ T ++  F  + + +GS+  +STSS
Sbjct: 162 ISTFWFLSWSFKQ*SEAVIFRKAISTRNSVLFENRGVKIGSII*VSTSS 16


>CB828260 
          Length = 557

 Score = 26.6 bits (57), Expect = 1.5
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = -2

Query: 2   SMASCYRRILELEASRDLSSFWLLAEMDVFYAAVETLSNPTFNGKAMAVGSMSM 55
           S +S +RR  +L  S DL+  WL A    F  + ++LS P F G+  ++   S+
Sbjct: 421 SFSSEFRRPTKLWPSSDLAGSWLCAPSITF--SRQSLSVPFFIGRPFSLKGHSV 266


>TC15745 
          Length = 517

 Score = 23.9 bits (50), Expect = 10.0
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 62  KARKFGVRSAIPK 74
           KARK+G+R  IPK
Sbjct: 139 KARKYGIRRQIPK 101


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.333    0.142    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,055,279
Number of Sequences: 28460
Number of extensions: 21952
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of query: 134
length of database: 4,897,600
effective HSP length: 81
effective length of query: 53
effective length of database: 2,592,340
effective search space: 137394020
effective search space used: 137394020
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 50 (23.9 bits)