BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0559.7
(442 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC12611 weakly similar to UP|BAC83787 (BAC83787) Tetratricopepti... 321 2e-88
AW720080 213 4e-56
BP034655 38 0.004
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (... 37 0.007
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr... 37 0.007
TC14766 similar to UP|Q7XXR8 (Q7XXR8) Nascent polypeptide associ... 35 0.019
TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetyla... 35 0.025
AV416122 35 0.025
TC15571 weakly similar to PIR|S19652|S19652 cellodextrinase C - ... 35 0.025
TC14767 similar to UP|Q7XXR8 (Q7XXR8) Nascent polypeptide associ... 35 0.032
TC8557 similar to UP|Q9LK52 (Q9LK52) Dbj|BAA90629.1, complete 34 0.042
BP037078 34 0.055
TC8063 UP|BAA31218 (BAA31218) Histone H3, complete 34 0.055
BI419972 34 0.055
AV410371 33 0.094
AI967639 33 0.12
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%) 33 0.12
TC9022 similar to PIR|T46225|T46225 alpha NAC-like protein - Ara... 33 0.12
TC19394 similar to UP|NSR1_YEAST (P27476) Nuclear localization s... 33 0.12
TC18764 similar to UP|Q8LBJ5 (Q8LBJ5) Nucleic acid binding prote... 32 0.21
>TC12611 weakly similar to UP|BAC83787 (BAC83787) Tetratricopeptide
repeat-containing protein-like, partial (4%)
Length = 704
Score = 321 bits (822), Expect = 2e-88
Identities = 168/168 (100%), Positives = 168/168 (100%)
Frame = +3
Query: 275 KPEEAIAYCEKAASVCKARLDRLTNEVKSITPASEAKNKSIEDKQAEIETLTGLSSDLEN 334
KPEEAIAYCEKAASVCKARLDRLTNEVKSITPASEAKNKSIEDKQAEIETLTGLSSDLEN
Sbjct: 3 KPEEAIAYCEKAASVCKARLDRLTNEVKSITPASEAKNKSIEDKQAEIETLTGLSSDLEN 182
Query: 335 KLEDLQLLVSNPKSTLSELLEKVAAKAGGGKESIPAKVSSSQLATANSSGGFDSPTISTA 394
KLEDLQLLVSNPKSTLSELLEKVAAKAGGGKESIPAKVSSSQLATANSSGGFDSPTISTA
Sbjct: 183 KLEDLQLLVSNPKSTLSELLEKVAAKAGGGKESIPAKVSSSQLATANSSGGFDSPTISTA 362
Query: 395 HSNGSAAGVTHLGVVGRGVKRTSLAPEASAPKKPALESTEGKGDSGSA 442
HSNGSAAGVTHLGVVGRGVKRTSLAPEASAPKKPALESTEGKGDSGSA
Sbjct: 363 HSNGSAAGVTHLGVVGRGVKRTSLAPEASAPKKPALESTEGKGDSGSA 506
>AW720080
Length = 394
Score = 213 bits (543), Expect = 4e-56
Identities = 110/111 (99%), Positives = 110/111 (99%)
Frame = +3
Query: 1 MVEEAPASETSVSMAPSEEAVAVDGTLNPSEHGKSEITNGATVDSAAIGGAESASNAETS 60
MVEEAPASETSVSMAPSEEA AVDGTLNPSEHGKSEITNGATVDSAAIGGAESASNAETS
Sbjct: 60 MVEEAPASETSVSMAPSEEAXAVDGTLNPSEHGKSEITNGATVDSAAIGGAESASNAETS 239
Query: 61 GKNSLELAVELMDKGTKAMKEDDFGEAAENFSRALEIRVANYGELAPECVN 111
GKNSLELAVELMDKGTKAMKEDDFGEAAENFSRALEIRVANYGELAPECVN
Sbjct: 240 GKNSLELAVELMDKGTKAMKEDDFGEAAENFSRALEIRVANYGELAPECVN 392
>BP034655
Length = 517
Score = 37.7 bits (86), Expect = 0.004
Identities = 20/60 (33%), Positives = 33/60 (54%)
Frame = +1
Query: 157 AAESSTAASFSSNAEQDIASNDQESAVDDESTKNYQEEDDEDSDAEDTEADEDESDLDLA 216
AA TAA F + + + ++E ++E + +EE++ED ED E DEDE + +A
Sbjct: 97 AAAHLTAADFGLSDDDEEEEEEEEEEEEEEEEEEEEEEEEEDE--EDDEEDEDEDYIPVA 270
Score = 30.4 bits (67), Expect = 0.61
Identities = 17/74 (22%), Positives = 32/74 (42%)
Frame = +1
Query: 130 PLGDVPKKQEGSQHGSSKDESVKSTINAAESSTAASFSSNAEQDIASNDQESAVDDESTK 189
PL P H ++E + + AA+ + E++ ++E ++E +
Sbjct: 43 PLFATPMASPSEFH---RNEIAAAHLTAADFGLSDDDEEEEEEEEEEEEEEEEEEEEEEE 213
Query: 190 NYQEEDDEDSDAED 203
EEDDE+ + ED
Sbjct: 214 EEDEEDDEEDEDED 255
>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
protein) (Fragment), partial (15%)
Length = 543
Score = 37.0 bits (84), Expect = 0.007
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +3
Query: 178 DQESAVDDESTKNYQEEDDEDSDAEDTEADEDESDLD 214
D E DD+ ++ ++EDD+D D +D + +E+E D D
Sbjct: 246 DNEEEEDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDD 356
Score = 35.8 bits (81), Expect = 0.014
Identities = 14/38 (36%), Positives = 24/38 (62%)
Frame = +3
Query: 177 NDQESAVDDESTKNYQEEDDEDSDAEDTEADEDESDLD 214
N++E D+E +++DD+D D +D E +ED+ D D
Sbjct: 249 NEEEEDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDD 362
Score = 33.9 bits (76), Expect = 0.055
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +3
Query: 174 IASNDQESAVDDESTKNYQEEDDEDSDAEDTEADEDESDLD 214
+ ++++E DDE + E+DD+D D +D +E++ D D
Sbjct: 237 VQTDNEEEEDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDD 359
Score = 31.2 bits (69), Expect = 0.36
Identities = 10/42 (23%), Positives = 24/42 (56%)
Frame = +3
Query: 171 EQDIASNDQESAVDDESTKNYQEEDDEDSDAEDTEADEDESD 212
+ D + + +D+ ++ ++DD+D D E+ E D+D+ +
Sbjct: 240 QTDNEEEEDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDE 365
Score = 30.4 bits (67), Expect = 0.61
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = +3
Query: 167 SSNAEQDIASNDQESAVDDESTKNYQEEDDEDSDAEDTEADEDESD 212
+ N E++ +D E D++ + ++DD+D + E+ + D+DE +
Sbjct: 243 TDNEEEE---DDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDEEE 371
Score = 30.0 bits (66), Expect = 0.80
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +3
Query: 171 EQDIASNDQESAVDDESTKNYQEEDDEDSDAEDTEADED 209
+++ D++ DD+ + +EE+D+D D E+ E E+
Sbjct: 270 DEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDEEEEGSEE 386
Score = 29.6 bits (65), Expect = 1.0
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 171 EQDIASNDQESAVDDESTKNYQEEDDEDSDAEDTEADEDE 210
E++ ++ + DD+ +EEDD+D D E+ ++E E
Sbjct: 273 EEEDDEDEDDDDDDDDDDDGEEEEDDDDDDEEEEGSEEVE 392
Score = 28.1 bits (61), Expect = 3.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 171 EQDIASNDQESAVDDESTKNYQEEDDEDSDAEDTEADEDE 210
E D +D + DD+ + +++DD+D + E +E E E
Sbjct: 279 EDDEDEDDDDDDDDDDDGEEEEDDDDDDEEEEGSEEVEVE 398
Score = 26.9 bits (58), Expect = 6.7
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 171 EQDIASNDQESAVDDESTKNYQEEDDEDSDAEDTEADEDE 210
+ D +D++ DD+ + E++ED D +D E + E
Sbjct: 264 DDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDEEEEGSE 383
>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
1-like protein 3, partial (81%)
Length = 1298
Score = 37.0 bits (84), Expect = 0.007
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 139 EGSQHGSSKDESVKSTINAAESSTAAS-FSSNAEQDIASNDQESAVDDESTKNYQEEDDE 197
E Q+ D + STI A S F+ AEQ S+ ++ DDE ++EDD+
Sbjct: 650 EELQNLMEHDYDIGSTIRDKIIPHAVSWFTGEAEQ---SDFEDIEEDDEDGDEDEDEDDD 820
Query: 198 DSDAEDTEADEDESD 212
D + E+ + D+DE D
Sbjct: 821 DDEEEEDDDDDDEDD 865
Score = 31.6 bits (70), Expect = 0.27
Identities = 13/59 (22%), Positives = 29/59 (49%)
Frame = +2
Query: 147 KDESVKSTINAAESSTAASFSSNAEQDIASNDQESAVDDESTKNYQEEDDEDSDAEDTE 205
+D+ + ++ S + E+D D++ DD+ + +++DD+D D E+ E
Sbjct: 701 RDKIIPHAVSWFTGEAEQSDFEDIEEDDEDGDEDEDEDDDDDEEEEDDDDDDEDDEEGE 877
>TC14766 similar to UP|Q7XXR8 (Q7XXR8) Nascent polypeptide associated
complex alpha chain, partial (58%)
Length = 600
Score = 35.4 bits (80), Expect = 0.019
Identities = 22/64 (34%), Positives = 32/64 (49%)
Frame = +2
Query: 151 VKSTINAAESSTAASFSSNAEQDIASNDQESAVDDESTKNYQEEDDEDSDAEDTEADEDE 210
+ S STA + S E A +Q+ DDE E+DDED D ED + DED+
Sbjct: 20 ISSVCTGTHRSTAMTAQSQEELLAAHLEQQKIHDDEPVV---EDDDEDDDDEDDD-DEDD 187
Query: 211 SDLD 214
+++
Sbjct: 188 DNIE 199
>TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (40%)
Length = 620
Score = 35.0 bits (79), Expect = 0.025
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 178 DQESAVDDESTKNYQEEDDEDSDAEDTEADEDESDLD 214
D+E DDE E+DD D + +D ++D DESD D
Sbjct: 3 DEEDDSDDED----DEDDDSDEEMDDADSDSDESDSD 101
Score = 30.4 bits (67), Expect = 0.61
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 178 DQESAVDDESTKNYQEEDDEDSDAEDTEADEDESD 212
D DDE + +E DD DSD++++++D+ + +
Sbjct: 12 DDSDDEDDEDDDSDEEMDDADSDSDESDSDDTDEE 116
>AV416122
Length = 414
Score = 35.0 bits (79), Expect = 0.025
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +3
Query: 127 EADPLGDVPKKQEGSQHGSSKDESVKSTIN-AAESSTAASFSSNAEQDIASNDQESAVDD 185
+A L P+ S ++ +V +T + +++ AA+ + + D+ +E D+
Sbjct: 144 KAPKLAATPEPNPDSNDNNNNHPAVSATDDCSSQPKEAANDDNEPDNDVQFEGEEEEDDE 323
Query: 186 ESTKNYQEEDDEDSDAEDTEADED 209
E + EE+D++ D + EA+ D
Sbjct: 324 EDKEEEDEEEDDEDDDSNGEAEVD 395
Score = 34.7 bits (78), Expect = 0.032
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +3
Query: 169 NAEQDIASNDQESAVDDESTKN------YQEEDDEDSDAEDTEADEDESD 212
+A D +S +E+A DD N +EEDDE+ E+ E ++DE D
Sbjct: 219 SATDDCSSQPKEAANDDNEPDNDVQFEGEEEEDDEEDKEEEDEEEDDEDD 368
>TC15571 weakly similar to PIR|S19652|S19652 cellodextrinase C - Pseudomonas
fluorescens {Pseudomonas fluorescens;} , partial (6%)
Length = 784
Score = 35.0 bits (79), Expect = 0.025
Identities = 14/45 (31%), Positives = 31/45 (68%)
Frame = -2
Query: 170 AEQDIASNDQESAVDDESTKNYQEEDDEDSDAEDTEADEDESDLD 214
+E++ S+DQ+ D+E T ++ + D+E++D+ + +DE+ + LD
Sbjct: 783 SEEETDSDDQDDDDDEEETDSFDQGDEEETDSSLSHSDEEIALLD 649
Score = 27.3 bits (59), Expect = 5.2
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -2
Query: 185 DESTKNYQEEDDEDSDAEDT--EADEDESDLDLAWKMLDIA 223
+E T + ++DD+D + D+ + DE+E+D L+ +IA
Sbjct: 780 EEETDSDDQDDDDDEEETDSFDQGDEEETDSSLSHSDEEIA 658
>TC14767 similar to UP|Q7XXR8 (Q7XXR8) Nascent polypeptide associated
complex alpha chain, partial (54%)
Length = 570
Score = 34.7 bits (78), Expect = 0.032
Identities = 21/79 (26%), Positives = 39/79 (48%)
Frame = +1
Query: 170 AEQDIASNDQESAVDDESTKNYQEEDDEDSDAEDTEADEDESDLDLAWKMLDIARAIVEK 229
AEQ A N + ES+ Q+++DED D ++ E D D++L ++R+ K
Sbjct: 127 AEQFKAPNLSNVGLKPESSGVAQDDEDEDEDEDENETGVDPKDIELVMTQATVSRSKAVK 306
Query: 230 QCVNTIEHVDILSTLAEIS 248
+ DI++ + E++
Sbjct: 307 AL--KAANGDIVAAIMELT 357
>TC8557 similar to UP|Q9LK52 (Q9LK52) Dbj|BAA90629.1, complete
Length = 1064
Score = 34.3 bits (77), Expect = 0.042
Identities = 22/69 (31%), Positives = 36/69 (51%), Gaps = 4/69 (5%)
Frame = +3
Query: 142 QHGSSKDESVKSTINAAESSTAASFSSNAEQDIASNDQESAVD----DESTKNYQEEDDE 197
+H SSK++S + +SS F ++D+ + +VD D K+ +E DD+
Sbjct: 357 RHFSSKNKSYSDDRDHGKSSHL--FLEGTKRDVEDHIVARSVDADDSDVEVKSDEESDDD 530
Query: 198 DSDAEDTEA 206
D D +DTEA
Sbjct: 531 DDDEDDTEA 557
>BP037078
Length = 529
Score = 33.9 bits (76), Expect = 0.055
Identities = 23/95 (24%), Positives = 43/95 (45%)
Frame = +1
Query: 246 EISLEREEFENSLSDYQKALSILEQLVDSKPEEAIAYCEKAASVCKARLDRLTNEVKSIT 305
E+ E+E+F + D + L+ V S ++ ++ AR L +V+++
Sbjct: 238 EVIAEKEKF---IQDKSSTVESLQNEVASLQKKGSLDAQEEVGKAHARAGELQKQVENLK 408
Query: 306 PASEAKNKSIEDKQAEIETLTGLSSDLENKLEDLQ 340
E +NK + + + L DL +KLED+Q
Sbjct: 409 RELEKQNKEKVNWETRVAELEKKIHDLNSKLEDIQ 513
>TC8063 UP|BAA31218 (BAA31218) Histone H3, complete
Length = 723
Score = 33.9 bits (76), Expect = 0.055
Identities = 24/97 (24%), Positives = 40/97 (40%), Gaps = 6/97 (6%)
Frame = -3
Query: 309 EAKNKSIEDKQAEIETLTGLSSDL------ENKLEDLQLLVSNPKSTLSELLEKVAAKAG 362
++KN + Q +E L ++ + KL L +L KS S + +
Sbjct: 349 KSKNSMALESQISLEILCDFTNKTLEWKLADQKLSTLLVLTDLTKSNSSRTIAMRLLDST 170
Query: 363 GGKESIPAKVSSSQLATANSSGGFDSPTISTAHSNGS 399
G + P + L + SSGGF S + T+H + S
Sbjct: 169 GSRSRFPRSLGGELLPGSLSSGGFASGLLGTSHGSRS 59
>BI419972
Length = 498
Score = 33.9 bits (76), Expect = 0.055
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +1
Query: 187 STKNYQEEDDEDSDAEDTEADEDESD 212
+ K+ + EDDED D ED +AD+D+ D
Sbjct: 334 ANKDSETEDDEDGDDEDDDADDDDDD 411
>AV410371
Length = 347
Score = 33.1 bits (74), Expect = 0.094
Identities = 26/80 (32%), Positives = 41/80 (50%), Gaps = 7/80 (8%)
Frame = +3
Query: 141 SQHGSSKDESVKS----TINAAESSTAASFSSNAEQDIASNDQESAVDDESTKNYQEEDD 196
S HG+S S T + +SST+ S +SN SN S DD+ ++ E+DD
Sbjct: 96 SDHGNSVSVGESSGSGDTGDLCKSSTSGSLNSNNPN--GSNFDNSCQDDD--EDMVEDDD 263
Query: 197 EDSDAE---DTEADEDESDL 213
+D+D + DT+ D+ D+
Sbjct: 264 DDADEDPGYDTDLYYDDEDI 323
>AI967639
Length = 335
Score = 32.7 bits (73), Expect = 0.12
Identities = 20/48 (41%), Positives = 26/48 (53%)
Frame = +1
Query: 167 SSNAEQDIASNDQESAVDDESTKNYQEEDDEDSDAEDTEADEDESDLD 214
SS++E D D+E DE +EEDD+D D +D ED SD D
Sbjct: 85 SSSSEGD--EEDEEEDQGDEYNLEDEEEDDDDDDDDDLSISED-SDSD 219
Score = 27.3 bits (59), Expect = 5.2
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +1
Query: 165 SFSSNAEQDIASNDQ--ESAVDDESTKNYQEEDDEDSDAEDTEADE 208
S SS +++ DQ E ++DE + ++DD+ S +ED+++D+
Sbjct: 85 SSSSEGDEEDEEEDQGDEYNLEDEEEDDDDDDDDDLSISEDSDSDK 222
Score = 26.6 bits (57), Expect = 8.8
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +1
Query: 172 QDIASN---DQESAVDDESTKNYQEEDDEDSDAEDTEADEDESDLDLA 216
+DI+S+ D+E +D+ + E+++ED D D+D+ DL ++
Sbjct: 76 RDISSSSEGDEEDEEEDQGDEYNLEDEEEDDD------DDDDDDLSIS 201
>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
Length = 1008
Score = 32.7 bits (73), Expect = 0.12
Identities = 17/78 (21%), Positives = 37/78 (46%), Gaps = 3/78 (3%)
Frame = -2
Query: 138 QEGSQHGSS---KDESVKSTINAAESSTAASFSSNAEQDIASNDQESAVDDESTKNYQEE 194
++G+ +G++ K S K+ + + E+D DQE DD+ + +++
Sbjct: 533 EDGAGYGNNSNNKSNSKKAPEGGPGAGAGPEENGEDEEDEDGEDQEDDDDDDEDDDEEDD 354
Query: 195 DDEDSDAEDTEADEDESD 212
ED + E E +++E +
Sbjct: 353 GGEDEEEEGVEEEDNEDE 300
Score = 27.7 bits (60), Expect = 3.9
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -2
Query: 171 EQDIASNDQESAVDDESTKNYQEEDDED--SDAEDTEA 206
+ D ++++ +DE + +EED+ED D ED EA
Sbjct: 386 DDDEDDDEEDDGGEDEEEEGVEEEDNEDEEEDEEDEEA 273
>TC9022 similar to PIR|T46225|T46225 alpha NAC-like protein - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (75%)
Length = 1083
Score = 32.7 bits (73), Expect = 0.12
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Frame = +3
Query: 145 SSKDESVKSTINAAESSTAASFSSNAE-----QDIASNDQESAVDDESTKNYQEEDDEDS 199
SS+ E+++ ++A E++ + +D+ +D++ A DDE +++DDED
Sbjct: 126 SSEAEALEQVLSAEETTLKKKPQPQEDDAPIVEDVKDDDKDEADDDED----EDDDDEDD 293
Query: 200 DAED 203
D ED
Sbjct: 294 DKED 305
Score = 28.5 bits (62), Expect = 2.3
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +3
Query: 155 INAAESSTAASFSSNAEQDIASNDQESAVDDESTKNYQEEDDEDSDAEDTEADEDESDLD 214
++A+ + A +AE+ + DD ++DD+D +D + D+D+ D D
Sbjct: 117 VDASSEAEALEQVLSAEETTLKKKPQPQEDDAPIVEDVKDDDKDEADDDEDEDDDDEDDD 296
>TC19394 similar to UP|NSR1_YEAST (P27476) Nuclear localization sequence
binding protein (P67), partial (6%)
Length = 590
Score = 32.7 bits (73), Expect = 0.12
Identities = 26/77 (33%), Positives = 39/77 (49%), Gaps = 14/77 (18%)
Frame = +1
Query: 152 KSTINAAESSTAASFSSNAEQDIAS-NDQE------------SAVDDESTKNYQEEDDED 198
K+ ++ ES + +S SS EQ I ND+E S+ DDE ++ + DED
Sbjct: 67 KTQSSSDESLSNSSSSSEEEQQIEQINDEEDEEELEAVARPASSGDDEVAEDIPPDSDED 246
Query: 199 -SDAEDTEADEDESDLD 214
+ AED + D+DE D
Sbjct: 247 PAAAEDADDDDDEQGGD 297
>TC18764 similar to UP|Q8LBJ5 (Q8LBJ5) Nucleic acid binding protein-like,
partial (35%)
Length = 848
Score = 32.0 bits (71), Expect = 0.21
Identities = 26/108 (24%), Positives = 40/108 (36%)
Frame = +1
Query: 125 QEEADPLGDVPKKQEGSQHGSSKDESVKSTINAAESSTAASFSSNAEQDIASNDQESAVD 184
+E+ D KKQ H S+K KS +S I+ ++ E +
Sbjct: 37 EEKED*KSQKDKKQGKESHSSNKP---KSNSKRGSEPQXVKYSKGL---ISKDEDEGEGE 198
Query: 185 DESTKNYQEEDDEDSDAEDTEADEDESDLDLAWKMLDIARAIVEKQCV 232
DE + +EED+E+ A + D W DI +CV
Sbjct: 199 DEDEEGLEEEDEEEHGETLCGACGESYAADEFWICCDICEKWFHGKCV 342
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.301 0.120 0.309
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,981,524
Number of Sequences: 28460
Number of extensions: 51409
Number of successful extensions: 573
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of query: 442
length of database: 4,897,600
effective HSP length: 93
effective length of query: 349
effective length of database: 2,250,820
effective search space: 785536180
effective search space used: 785536180
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0559.7