BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0559.15
(664 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AU089102 116 1e-26
AV413186 112 2e-25
BP038410 85 3e-17
TC20002 similar to UP|Q9FJY7 (Q9FJY7) Selenium-binding protein-l... 84 7e-17
BP081623 82 4e-16
BP063629 73 1e-13
TC19836 59 2e-09
AV769479 59 3e-09
AI967878 59 3e-09
BP053476 50 1e-06
AV409405 46 2e-05
BP035488 42 3e-04
BI418759 42 4e-04
AV772727 37 0.008
AV779633 37 0.008
CB826792 37 0.010
AV766731 32 0.25
BU494388 32 0.25
AV770033 32 0.33
AV425299 32 0.33
>AU089102
Length = 480
Score = 116 bits (290), Expect = 1e-26
Identities = 58/150 (38%), Positives = 84/150 (55%)
Frame = +2
Query: 468 GLFPDEITFTGLLSACSHSGLVEMGRYYFGLMSSTFGISPDVAHYACMVDLLGRGGFLGE 527
G +++T+ LL+ACSH+GLV+ G YF + I HYAC+VDL GR G L E
Sbjct: 26 GFQANDVTYVELLTACSHAGLVDEGIQYFDKLLKNRSIQVKEXHYACLVDLCGRAGRLKE 205
Query: 528 AMSLIQKLPMKPDAVVWGALLGACKTFGNLEMGKQILKQLLELGRYDSGLYVLLSNMYSE 587
+I+ L +K VWG LL C GN ++GK + ++L++ ++G Y LLSNMY+
Sbjct: 206 XFYIIEGLGVKLSLSVWGPLLAGCNVHGNADIGKLVTTKILKVEHENAGTYSLLSNMYAS 385
Query: 588 SQRWDDMKKIRKIMNDSGIKKCRAISSIEI 617
+ W + MND G+KK IE+
Sbjct: 386 XRXWKXXAPVXMKMNDKGLKKQPRCXWIEV 475
Score = 33.5 bits (75), Expect = 0.11
Identities = 23/89 (25%), Positives = 43/89 (47%), Gaps = 2/89 (2%)
Frame = +2
Query: 367 GVMPDNATLVSILSSCSHMGDLALGKKAHDYICDN-NITVSVTLCNSLMNMYAKCGALQT 425
G ++ T V +L++CSH G + G + D + N +I V L+++ + G L+
Sbjct: 26 GFQANDVTYVELLTACSHAGLVDEGIQYFDKLLKNRSIQVKEXHYACLVDLCGRAGRLKE 205
Query: 426 AMDIFFGMPQKNVVS-WNVIIGALALHGS 453
I G+ K +S W ++ +HG+
Sbjct: 206 XFYIIEGLGVKLSLSVWGPLLAGCNVHGN 292
>AV413186
Length = 398
Score = 112 bits (279), Expect = 2e-25
Identities = 58/120 (48%), Positives = 79/120 (65%), Gaps = 1/120 (0%)
Frame = +1
Query: 415 NMYAKCGALQTAMDIFFGMPQK-NVVSWNVIIGALALHGSGKEAIEMFEKMRASGLFPDE 473
+MY+KCG+L+TA +F + K +VV WN +I ALA HG G EA+ M M SG+ P+
Sbjct: 4 DMYSKCGSLETAWRVFNLVGNKQDVVLWNTMISALAHHGFGTEAMVMLNDMIRSGVEPNR 183
Query: 474 ITFTGLLSACSHSGLVEMGRYYFGLMSSTFGISPDVAHYACMVDLLGRGGFLGEAMSLIQ 533
TF LL+ACS SGLV+ G +F M+S FG+ PD HYAC+ DLL R G+ E++ +Q
Sbjct: 184 ATFVVLLNACSLSGLVQEGLQFFKFMTSEFGVVPDQEHYACLTDLLVRAGYFDESVKGLQ 363
Score = 46.2 bits (108), Expect = 2e-05
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Frame = +1
Query: 283 DMYAKCGHLQYAETVFDRMLDR-NVVSWTCMINAYANHGLIDHALEIFDQMPVKNAVSWN 341
DMY+KCG L+ A VF+ + ++ +VV W MI+A A+HG
Sbjct: 4 DMYSKCGSLETAWRVFNLVGNKQDVVLWNTMISALAHHGF-------------------- 123
Query: 342 SIISCHVQEGQHAEAMELFCRMCVSGVMPDNATLVSILSSCSHMG 386
EAM + M SGV P+ AT V +L++CS G
Sbjct: 124 -----------GTEAMVMLNDMIRSGVEPNRATFVVLLNACSLSG 225
Score = 42.7 bits (99), Expect = 2e-04
Identities = 30/110 (27%), Positives = 53/110 (47%), Gaps = 2/110 (1%)
Frame = +1
Query: 183 LYVACRLIRSARQVFDDISDRT-LVSWNSMIVGYSKMGFSKEAILLFKEMQYLGVEADMF 241
+Y C + +A +VF+ + ++ +V WN+MI + GF EA+++ +M GVE +
Sbjct: 7 MYSKCGSLETAWRVFNLVGNKQDVVLWNTMISALAHHGFGTEAMVMLNDMIRSGVEPNRA 186
Query: 242 TLVGLLSVALRHGNLDLG-RFVHLYIVVAGIEIDSIVTNALIDMYAKCGH 290
T V LL+ G + G +F G+ D L D+ + G+
Sbjct: 187 TFVVLLNACSLSGLVQEGLQFFKFMTSEFGVVPDQEHYACLTDLLVRAGY 336
Score = 28.1 bits (61), Expect = 4.7
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = +1
Query: 106 MYNHLIRGYSNSDDPNKSLLLYRKMVCAGIMPNQFTIPFVLKACS 150
++N +I ++ +++++ M+ +G+ PN+ T +L ACS
Sbjct: 82 LWNTMISALAHHGFGTEAMVMLNDMIRSGVEPNRATFVVLLNACS 216
>BP038410
Length = 468
Score = 85.1 bits (209), Expect = 3e-17
Identities = 47/145 (32%), Positives = 75/145 (51%)
Frame = -2
Query: 338 VSWNSIISCHVQEGQHAEAMELFCRMCVSGVMPDNATLVSILSSCSHMGDLALGKKAHDY 397
VSWNS+ +LF +MC SG++ +T++ +L + G+ +GK H Y
Sbjct: 398 VSWNSVF-------------DLFTKMCWSGLIASASTVLILLPAAGDTGNFVVGKSLHGY 258
Query: 398 ICDNNITVSVTLCNSLMNMYAKCGALQTAMDIFFGMPQKNVVSWNVIIGALALHGSGKEA 457
+ + + +L++MYAK G + IF + K+VV WN +IG A +G EA
Sbjct: 257 YIQIGFSSHLNVLTALIDMYAKTGLVHWGRKIFDSLVDKDVVLWNCLIGNYARNGLVGEA 78
Query: 458 IEMFEKMRASGLFPDEITFTGLLSA 482
+ + +KMR G+ + TF GLL A
Sbjct: 77 LYLLQKMRIQGMKTNSSTFVGLLLA 3
Score = 80.5 bits (197), Expect = 8e-16
Identities = 46/131 (35%), Positives = 71/131 (54%)
Frame = -2
Query: 205 LVSWNSMIVGYSKMGFSKEAILLFKEMQYLGVEADMFTLVGLLSVALRHGNLDLGRFVHL 264
LVSWNS+ ++KM +S G+ A T++ LL A GN +G+ +H
Sbjct: 401 LVSWNSVFDLFTKMCWS-------------GLIASASTVLILLPAAGDTGNFVVGKSLHG 261
Query: 265 YIVVAGIEIDSIVTNALIDMYAKCGHLQYAETVFDRMLDRNVVSWTCMINAYANHGLIDH 324
Y + G V ALIDMYAK G + + +FD ++D++VV W C+I YA +GL+
Sbjct: 260 YYIQIGFSSHLNVLTALIDMYAKTGLVHWGRKIFDSLVDKDVVLWNCLIGNYARNGLVGE 81
Query: 325 ALEIFDQMPVK 335
AL + +M ++
Sbjct: 80 ALYLLQKMRIQ 48
Score = 69.7 bits (169), Expect = 1e-12
Identities = 36/122 (29%), Positives = 66/122 (53%)
Frame = -2
Query: 126 LYRKMVCAGIMPNQFTIPFVLKACSAKPSCWDVAVVHAQAIKLGMGSHVCVQNAFLSLYV 185
L+ KM +G++ + T+ +L A + +H I++G SH+ V A + +Y
Sbjct: 374 LFTKMCWSGLIASASTVLILLPAAGDTGNFVVGKSLHGYYIQIGFSSHLNVLTALIDMYA 195
Query: 186 ACRLIRSARQVFDDISDRTLVSWNSMIVGYSKMGFSKEAILLFKEMQYLGVEADMFTLVG 245
L+ R++FD + D+ +V WN +I Y++ G EA+ L ++M+ G++ + T VG
Sbjct: 194 KTGLVHWGRKIFDSLVDKDVVLWNCLIGNYARNGLVGEALYLLQKMRIQGMKTNSSTFVG 15
Query: 246 LL 247
LL
Sbjct: 14 LL 9
Score = 36.2 bits (82), Expect = 0.017
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = -2
Query: 477 TGLLSACSHSGLVEMGRYYFGLMSSTFGISPDVAHYACMVDLLGRGGFLGEAMSLIQKL 535
T L+ + +GLV GR F + + DV + C++ R G +GEA+ L+QK+
Sbjct: 218 TALIDMYAKTGLVHWGRKIFDSL-----VDKDVVLWNCLIGNYARNGLVGEALYLLQKM 57
>TC20002 similar to UP|Q9FJY7 (Q9FJY7) Selenium-binding protein-like,
partial (4%)
Length = 560
Score = 84.0 bits (206), Expect = 7e-17
Identities = 42/111 (37%), Positives = 70/111 (62%), Gaps = 5/111 (4%)
Frame = -3
Query: 42 QTLHCLLDQCSSLRQLKLLHAQIILHGLTGQILTLGKLLSFC---VHLGDLRYAHLLFDQ 98
QTL L ++CS++ LK +HA+I G L +GK++ FC V GD+ YA +FD+
Sbjct: 351 QTLMTLFNRCSTMNHLKEIHARIYQTGFHQNHLVVGKIIVFCAVSVPAGDMNYAVSVFDR 172
Query: 99 TPQPNKFMYNHLIRGYSNSDDPNKSLLLYRKMVCA--GIMPNQFTIPFVLK 147
+P+ F++N +IRG+ N++ P K++L Y++M ++P+ FT F+LK
Sbjct: 171 VDKPDAFLWNTMIRGFGNTNQPEKAVLFYKRMQQGEPHVVPDTFTFSFLLK 19
Score = 34.7 bits (78), Expect = 0.051
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Frame = -3
Query: 161 VHAQAIKLGMG-SHVCVQN--AFLSLYVACRLIRSARQVFDDISDRTLVSWNSMIVGYSK 217
+HA+ + G +H+ V F ++ V + A VFD + WN+MI G+
Sbjct: 297 IHARIYQTGFHQNHLVVGKIIVFCAVSVPAGDMNYAVSVFDRVDKPDAFLWNTMIRGFGN 118
Query: 218 MGFSKEAILLFKEMQY--LGVEADMFTLVGLLSV 249
++A+L +K MQ V D FT LL +
Sbjct: 117 TNQPEKAVLFYKRMQQGEPHVVPDTFTFSFLLKI 16
Score = 28.1 bits (61), Expect = 4.7
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -3
Query: 320 GLIDHALEIFDQMPVKNAVSWNSIISCHVQEGQHAEAMELFCRMCVS--GVMPDNATLVS 377
G +++A+ +FD++ +A WN++I Q +A+ + RM V+PD T
Sbjct: 207 GDMNYAVSVFDRVDKPDAFLWNTMIRGFGNTNQPEKAVLFYKRMQQGEPHVVPDTFTFSF 28
Query: 378 ILSSCSHMG 386
+L +G
Sbjct: 27 LLKIVGGLG 1
>BP081623
Length = 461
Score = 81.6 bits (200), Expect = 4e-16
Identities = 36/87 (41%), Positives = 56/87 (63%)
Frame = -2
Query: 543 VWGALLGACKTFGNLEMGKQILKQLLELGRYDSGLYVLLSNMYSESQRWDDMKKIRKIMN 602
VWGALLGAC+ +G++ +G+ + L EL G Y+LL+NMY+E +RWDD K+R++M
Sbjct: 460 VWGALLGACRIYGDVGLGRWAAEHLFELKPQHCGYYILLANMYAEIERWDDANKVRQLMK 281
Query: 603 DSGIKKCRAISSIEIDGCCYQFMVDDK 629
G KK S +++ + F+V +K
Sbjct: 280 SRGAKKNPGCSWVKVGDKMHAFLVGEK 200
>BP063629
Length = 525
Score = 73.2 bits (178), Expect = 1e-13
Identities = 43/139 (30%), Positives = 70/139 (49%), Gaps = 2/139 (1%)
Frame = +1
Query: 47 LLDQCSSLRQLKLLHAQIILHGLTGQILTLGKLLSFCVH--LGDLRYAHLLFDQTPQPNK 104
LL C S+ +LK + A I GL TL KL++ +GD YA +FD QP+
Sbjct: 109 LLKSCKSMCELKQIQALIFCSGLQQDRDTLNKLMAISTDSSIGDFHYALRIFDHIQQPSL 288
Query: 105 FMYNHLIRGYSNSDDPNKSLLLYRKMVCAGIMPNQFTIPFVLKACSAKPSCWDVAVVHAQ 164
F YN +I+ ++ +++ L++++ G+ P+ +T P+VLKA VHA
Sbjct: 289 FNYNVMIKAFAKKGSFRRAISLFQQLREDGVWPDNYTYPYVLKAIGCLGDVGQGRKVHAF 468
Query: 165 AIKLGMGSHVCVQNAFLSL 183
IK G+ V N+ + +
Sbjct: 469 VIKSGLEFDAYVCNSLMDM 525
Score = 65.9 bits (159), Expect = 2e-11
Identities = 33/114 (28%), Positives = 61/114 (52%)
Frame = +1
Query: 303 DRNVVSWTCMINAYANHGLIDHALEIFDQMPVKNAVSWNSIISCHVQEGQHAEAMELFCR 362
DR+ ++ I+ ++ G +AL IFD + + ++N +I ++G A+ LF +
Sbjct: 184 DRDTLNKLMAISTDSSIGDFHYALRIFDHIQQPSLFNYNVMIKAFAKKGSFRRAISLFQQ 363
Query: 363 MCVSGVMPDNATLVSILSSCSHMGDLALGKKAHDYICDNNITVSVTLCNSLMNM 416
+ GV PDN T +L + +GD+ G+K H ++ + + +CNSLM+M
Sbjct: 364 LREDGVWPDNYTYPYVLKAIGCLGDVGQGRKVHAFVIKSGLEFDAYVCNSLMDM 525
>TC19836
Length = 464
Score = 59.3 bits (142), Expect = 2e-09
Identities = 27/88 (30%), Positives = 47/88 (52%)
Frame = +2
Query: 535 LPMKPDAVVWGALLGACKTFGNLEMGKQILKQLLELGRYDSGLYVLLSNMYSESQRWDDM 594
+PMKP +W +L+ ACK G L++ + + QL+ ++ Y LL+ +Y+E W
Sbjct: 8 MPMKPSTRIWSSLVSACKLHGRLDIAEMLGPQLIRSEPDNAANYTLLNMIYAEHGHWLHK 187
Query: 595 KKIRKIMNDSGIKKCRAISSIEIDGCCY 622
+++ + M +KKC S IE C+
Sbjct: 188 EQVMEAMKLQRLKKCYGFSRIETGNQCF 271
>AV769479
Length = 287
Score = 58.9 bits (141), Expect = 3e-09
Identities = 33/94 (35%), Positives = 52/94 (55%)
Frame = +1
Query: 375 LVSILSSCSHMGDLALGKKAHDYICDNNITVSVTLCNSLMNMYAKCGALQTAMDIFFGMP 434
LV ++ CS DLALGK+ H +I + ++ N+ +N YA+CG + +A F M
Sbjct: 4 LVCHMNLCSKRVDLALGKQIHAHILKSKWR-NLIADNAFVNFYAECGKISSAFRTFDRMA 180
Query: 435 QKNVVSWNVIIGALALHGSGKEAIEMFEKMRASG 468
+++VV W II A + G G EA+ + +M G
Sbjct: 181 KRDVVCWTTIITACSQQGLGHEALLILSQMLGDG 282
Score = 57.0 bits (136), Expect = 1e-08
Identities = 33/90 (36%), Positives = 51/90 (56%)
Frame = +1
Query: 243 LVGLLSVALRHGNLDLGRFVHLYIVVAGIEIDSIVTNALIDMYAKCGHLQYAETVFDRML 302
LV +++ + +L LG+ +H +I+ + + I NA ++ YA+CG + A FDRM
Sbjct: 4 LVCHMNLCSKRVDLALGKQIHAHILKSKWR-NLIADNAFVNFYAECGKISSAFRTFDRMA 180
Query: 303 DRNVVSWTCMINAYANHGLIDHALEIFDQM 332
R+VV WT +I A + GL AL I QM
Sbjct: 181 KRDVVCWTTIITACSQQGLGHEALLILSQM 270
Score = 47.8 bits (112), Expect = 6e-06
Identities = 23/71 (32%), Positives = 39/71 (54%)
Frame = +1
Query: 161 VHAQAIKLGMGSHVCVQNAFLSLYVACRLIRSARQVFDDISDRTLVSWNSMIVGYSKMGF 220
+HA +K ++ NAF++ Y C I SA + FD ++ R +V W ++I S+ G
Sbjct: 61 IHAHILK-SKWRNLIADNAFVNFYAECGKISSAFRTFDRMAKRDVVCWTTIITACSQQGL 237
Query: 221 SKEAILLFKEM 231
EA+L+ +M
Sbjct: 238 GHEALLILSQM 270
Score = 42.4 bits (98), Expect = 2e-04
Identities = 21/64 (32%), Positives = 34/64 (52%)
Frame = +1
Query: 304 RNVVSWTCMINAYANHGLIDHALEIFDQMPVKNAVSWNSIISCHVQEGQHAEAMELFCRM 363
RN+++ +N YA G I A FD+M ++ V W +II+ Q+G EA+ + +M
Sbjct: 91 RNLIADNAFVNFYAECGKISSAFRTFDRMAKRDVVCWTTIITACSQQGLGHEALLILSQM 270
Query: 364 CVSG 367
G
Sbjct: 271 LGDG 282
>AI967878
Length = 393
Score = 58.9 bits (141), Expect = 3e-09
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 20/121 (16%)
Frame = +1
Query: 436 KNVVSWNVIIGALALHGSGKEAIEMFEKM----RASG----------------LFPDEIT 475
+N+VSWN +I +HG+ ++ + +F++M + G L PDE+T
Sbjct: 31 RNLVSWNAMILGHCIHGNPEDGLSLFDEMVGMDKVKGEVEIDESPCADRGVVRLPPDEVT 210
Query: 476 FTGLLSACSHSGLVEMGRYYFGLMSSTFGISPDVAHYACMVDLLGRGGFLGEAMSLIQKL 535
F G+L AC+ + L+ GR YF M+ FG+ P + Y L G L + S+
Sbjct: 211 FIGILCACARAELLAEGRSYFKQMTDVFGLKPILLIYGAWPICLQMHGLLMKPKSVCGTW 390
Query: 536 P 536
P
Sbjct: 391 P 393
Score = 37.0 bits (84), Expect = 0.010
Identities = 27/98 (27%), Positives = 42/98 (42%)
Frame = +1
Query: 303 DRNVVSWTCMINAYANHGLIDHALEIFDQMPVKNAVSWNSIISCHVQEGQHAEAMELFCR 362
+RN+VSW MI + HG + L +FD+M + V + E A+
Sbjct: 28 NRNLVSWNAMILGHCIHGNPEDGLSLFDEMVGMDKVKG----EVEIDESPCAD------- 174
Query: 363 MCVSGVMPDNATLVSILSSCSHMGDLALGKKAHDYICD 400
V + PD T + IL +C+ LA G+ + D
Sbjct: 175 RGVVRLPPDEVTFIGILCACARAELLAEGRSYFKQMTD 288
Score = 32.7 bits (73), Expect = 0.19
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1
Query: 201 SDRTLVSWNSMIVGYSKMGFSKEAILLFKEM 231
++R LVSWN+MI+G+ G ++ + LF EM
Sbjct: 25 TNRNLVSWNAMILGHCIHGNPEDGLSLFDEM 117
>BP053476
Length = 514
Score = 50.1 bits (118), Expect = 1e-06
Identities = 21/63 (33%), Positives = 38/63 (59%)
Frame = -3
Query: 591 WDDMKKIRKIMNDSGIKKCRAISSIEIDGCCYQFMVDDKNHEVSTSIYSMVDQLMDHLKS 650
W D++ IRK M G+KK S +E+ Y+F + D++H S +Y++++++ + LK
Sbjct: 512 WTDVQTIRKSMLQDGVKKTPGYSLVELANRVYEFTLGDRSHPQSQDVYALLEKITELLKL 333
Query: 651 VGY 653
GY
Sbjct: 332 EGY 324
>AV409405
Length = 424
Score = 45.8 bits (107), Expect = 2e-05
Identities = 25/84 (29%), Positives = 43/84 (50%)
Frame = +1
Query: 47 LLDQCSSLRQLKLLHAQIILHGLTGQILTLGKLLSFCVHLGDLRYAHLLFDQTPQPNKFM 106
LL+ C + LH+ + GLT + KL + +AH LFD+TP + ++
Sbjct: 163 LLETCHCEKSTSQLHSLCLKLGLTHDSFIVTKLNVLYGKHASIHHAHKLFDETPDKSVYL 342
Query: 107 YNHLIRGYSNSDDPNKSLLLYRKM 130
+N L+R Y + ++L L+R+M
Sbjct: 343 WNALLRRYRAEGEWAETLSLFRRM 414
Score = 44.3 bits (103), Expect = 6e-05
Identities = 19/48 (39%), Positives = 29/48 (59%)
Frame = +1
Query: 316 YANHGLIDHALEIFDQMPVKNAVSWNSIISCHVQEGQHAEAMELFCRM 363
Y H I HA ++FD+ P K+ WN+++ + EG+ AE + LF RM
Sbjct: 271 YGKHASIHHAHKLFDETPDKSVYLWNALLRRYRAEGEWAETLSLFRRM 414
Score = 38.9 bits (89), Expect = 0.003
Identities = 24/96 (25%), Positives = 45/96 (46%)
Frame = +1
Query: 136 MPNQFTIPFVLKACSAKPSCWDVAVVHAQAIKLGMGSHVCVQNAFLSLYVACRLIRSARQ 195
M + I +L+ C + S + +H+ +KLG+ + LY I A +
Sbjct: 136 MKRRDLIATLLETCHCEKS---TSQLHSLCLKLGLTHDSFIVTKLNVLYGKHASIHHAHK 306
Query: 196 VFDDISDRTLVSWNSMIVGYSKMGFSKEAILLFKEM 231
+FD+ D+++ WN+++ Y G E + LF+ M
Sbjct: 307 LFDETPDKSVYLWNALLRRYRAEGEWAETLSLFRRM 414
>BP035488
Length = 534
Score = 42.0 bits (97), Expect = 3e-04
Identities = 27/117 (23%), Positives = 55/117 (46%), Gaps = 4/117 (3%)
Frame = +3
Query: 436 KNVVSWNVIIGALALHGSGKEAIEMFEKMRASGLFPDEITFTGLLSACSHSGLVEMGRYY 495
+++ +WNVI+ + G+ EA +++ + AS PD T+ + A + G +
Sbjct: 63 RDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPDLFTYATFIKALTKKGKLGTALKL 242
Query: 496 F-GLMSSTFGISPDVAHYACMVDLLGRGGFLGEAMSLIQKLP---MKPDAVVWGALL 548
F G+ + PDV C++D L + EA+ + Q + +P+ + +L+
Sbjct: 243 FRGMWNEGCNCKPDVVICNCIIDALCFKKRVPEALEVFQDMKERGCEPNVATYNSLI 413
Score = 38.9 bits (89), Expect = 0.003
Identities = 33/155 (21%), Positives = 68/155 (43%), Gaps = 12/155 (7%)
Frame = +3
Query: 203 RTLVSWNSMIVGYSKMGFSKEAILLFKEMQYLGVEADMFTLVGLLSVALRHGNLD--LGR 260
R + +WN ++ G+ +G + EA ++K++ D+FT + + G L L
Sbjct: 63 RDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPDLFTYATFIKALTKKGKLGTALKL 242
Query: 261 FVHLYIVVAGIEIDSIVTNALIDMYAKCGHLQYAETVFDRMLDR----NVVSWTCMINAY 316
F ++ + D ++ N +ID + A VF M +R NV ++ +I
Sbjct: 243 FRGMWNEGCNCKPDVVICNCIIDALCFKKRVPEALEVFQDMKERGCEPNVATYNSLIKHL 422
Query: 317 ANHGLIDHALEIFDQMPVK------NAVSWNSIIS 345
++ E+ + M K NAV+++ +++
Sbjct: 423 CKIRRMEKVYELVEDMERKKGSCMPNAVTYSCLLN 527
>BI418759
Length = 543
Score = 41.6 bits (96), Expect = 4e-04
Identities = 33/127 (25%), Positives = 54/127 (41%), Gaps = 17/127 (13%)
Frame = +2
Query: 276 IVTNALIDMYAKCGHLQYAETVFDRMLDR---------NVVSWTCMINAYANHGLIDHAL 326
+ N L+++ K G A +FD+MLD N ++ M+N N G AL
Sbjct: 116 VTCNVLLEVLLKHGKKTQAWALFDQMLDNHTPPNFQAVNSDTFNIMVNECFNLGKFHEAL 295
Query: 327 EIFDQMPVK--------NAVSWNSIISCHVQEGQHAEAMELFCRMCVSGVMPDNATLVSI 378
F + K + +N+IIS + G +EA LF +C + PD T ++
Sbjct: 296 ATFRKAGTKSNSKAFAMDVAGYNNIISRFCENGLLSEAETLFEELCSKSLSPDVPTHRTL 475
Query: 379 LSSCSHM 385
+ + M
Sbjct: 476 IDAYMKM 496
>AV772727
Length = 528
Score = 37.4 bits (85), Expect = 0.008
Identities = 23/66 (34%), Positives = 34/66 (50%), Gaps = 4/66 (6%)
Frame = -2
Query: 270 GIEIDSIVTNALIDMYAKCGHLQYAETVFDRMLDR----NVVSWTCMINAYANHGLIDHA 325
GI+ D N +ID K G ++ A+ +F +L + NVV++ MIN GL D A
Sbjct: 437 GIQPDMYTYNIIIDGLCKSGRVKDAQELFQDLLIKGYRLNVVTYNIMINGLCIEGLSDEA 258
Query: 326 LEIFDQ 331
L + Q
Sbjct: 257 LALLIQ 240
Score = 28.9 bits (63), Expect = 2.8
Identities = 14/54 (25%), Positives = 29/54 (52%)
Frame = -2
Query: 435 QKNVVSWNVIIGALALHGSGKEAIEMFEKMRASGLFPDEITFTGLLSACSHSGL 488
Q ++ ++N+II L G K+A E+F+ + G + +T+ +++ GL
Sbjct: 431 QPDMYTYNIIIDGLCKSGRVKDAQELFQDLLIKGYRLNVVTYNIMINGLCIEGL 270
>AV779633
Length = 440
Score = 37.4 bits (85), Expect = 0.008
Identities = 40/177 (22%), Positives = 72/177 (40%), Gaps = 2/177 (1%)
Frame = -2
Query: 197 FDDISDRTLVSWNSMIVGYSKMGFSKEAILLFKEMQYLGVEADMFTLVGLLSVALRHGNL 256
FD R ++ N++I GY + G +A+ L + GV+ D+ +
Sbjct: 439 FDGGIARDVIGLNTLIDGYCEAGLMSQALALMENSWKTGVKPDIVSY------------- 299
Query: 257 DLGRFVHLYIVVAGIEIDSIVTNALIDMYAKCGHLQYAETVFDRML--DRNVVSWTCMIN 314
N+L+ + K G L AE++FD +L R+ S N
Sbjct: 298 ----------------------NSLLKGFCKAGDLVRAESLFDEILGFQRDGESGQLKNN 185
Query: 315 AYANHGLIDHALEIFDQMPVKNAVSWNSIISCHVQEGQHAEAMELFCRMCVSGVMPD 371
A +D E+ + P ++ ++IS + + E+ L+ +M +SG+MPD
Sbjct: 184 A------VDTRDELRNIRPT--LATYTTLISAYGKHCGIEESRSLYEQMVMSGIMPD 38
>CB826792
Length = 485
Score = 37.0 bits (84), Expect = 0.010
Identities = 34/133 (25%), Positives = 60/133 (44%), Gaps = 5/133 (3%)
Frame = +3
Query: 401 NNITVSVTLCNSLMNMYAKCGALQTAMDIFFGMPQKNVV----SWNVIIGALALHGSGKE 456
NN+T V NSL+ K + A ++F M ++N+ +++ L + +E
Sbjct: 60 NNVTPDVVTYNSLIKPLCKNRKIDEAKEVFNDMMKRNITPTIRTFHAFFRILRVE---EE 230
Query: 457 AIEMFEKMRASGLFPDEITFTGLL-SACSHSGLVEMGRYYFGLMSSTFGISPDVAHYACM 515
E+ +KMR G +P T+ L+ C L E+ + + M G+S D + Y +
Sbjct: 231 VFELLDKMRELGCYPTIETYIMLIRKFCRWRKLDEVFKIW--NMMREDGVSHDRSSYIVL 404
Query: 516 VDLLGRGGFLGEA 528
+ L G + EA
Sbjct: 405 IHGLFLNGKVKEA 443
>AV766731
Length = 576
Score = 32.3 bits (72), Expect = 0.25
Identities = 29/153 (18%), Positives = 65/153 (41%), Gaps = 4/153 (2%)
Frame = -3
Query: 368 VMPDNATLVSILSSCSHMGDLALGKKAHDYICDNNITVSVTLCNSLMNMYAKCGALQTAM 427
++P+ S+++ ++ + D + + + NSL + K L A+
Sbjct: 559 LIPNTVKKNSLINGLCKARRISCAVELVDVMHETGPPADLITTNSLFDGLCKHHLLDKAI 380
Query: 428 DIFFGMP----QKNVVSWNVIIGALALHGSGKEAIEMFEKMRASGLFPDEITFTGLLSAC 483
+F + Q N+ + VII L G K A E+F+ + + G + +T+T +++
Sbjct: 379 ALFMKVKDPKIQPNIPPYPVIIDGLCKVGRLKIAQEIFQVLLSEGYNLNVMTYTVMINGY 200
Query: 484 SHSGLVEMGRYYFGLMSSTFGISPDVAHYACMV 516
GL++ + M G P+ ++ ++
Sbjct: 199 CKEGLLDEAQALLSKMEDN-GCIPNAVNFQTII 104
>BU494388
Length = 350
Score = 32.3 bits (72), Expect = 0.25
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = +2
Query: 433 MPQKNVVSWNVIIGALALHGSGKE---AIEMFEKMRASGLFPDEITFTGLLSACSHSGLV 489
M ++NV ++ + L G K + +F M G+ P + F L+SAC S +
Sbjct: 104 MLKENVKDHSLFSELILLCGKLKNLPLGMRVFTSMETIGVKPSSLVFNSLISACLSSNDI 283
Query: 490 EMGRYYFGLMSSTFGISPDV 509
F +M S+ PD+
Sbjct: 284 VTAYSLFEIMESSESYKPDL 343
>AV770033
Length = 298
Score = 32.0 bits (71), Expect = 0.33
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = -1
Query: 435 QKNVVSWNVIIGALALHGSGKEAIEMFEKMRASGLFPDEITFTGLLSACSHSG 487
Q +V+S+N+++ L+ +AIE+ M G P+E T+T L+ ++G
Sbjct: 277 QPSVISYNIVLLGLSKVHRISDAIEVLAAMVDKGCRPNETTYTLLVEGIGYAG 119
>AV425299
Length = 323
Score = 32.0 bits (71), Expect = 0.33
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Frame = +3
Query: 75 TLGKLLSFCVHLGDLRYAHLLFDQTP----QPNKFMYNHLIRGYSNSDDPNKSLLLYRKM 130
T L+ +G+L A F+ QP+ +YN +I GY N+ DP L +KM
Sbjct: 33 TASALVHLYCKVGNLERAKEAFEVLTRKGFQPDIKVYNSMIMGYVNAGDPKAGESLMKKM 212
Query: 131 -VCAGIMPNQFTIPFVLKACSAK 152
GI P + +L+A S +
Sbjct: 213 EERGGIKPTKEIYTALLRAYSER 281
Score = 28.1 bits (61), Expect = 4.7
Identities = 18/70 (25%), Positives = 33/70 (46%), Gaps = 4/70 (5%)
Frame = +3
Query: 170 MGSHVCVQNAFLSLYVACRLIRSARQVFDDISDR----TLVSWNSMIVGYSKMGFSKEAI 225
+G +A + LY + A++ F+ ++ + + +NSMI+GY G K
Sbjct: 15 IGLDASTASALVHLYCKVGNLERAKEAFEVLTRKGFQPDIKVYNSMIMGYVNAGDPKAGE 194
Query: 226 LLFKEMQYLG 235
L K+M+ G
Sbjct: 195 SLMKKMEERG 224
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.325 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,195,595
Number of Sequences: 28460
Number of extensions: 180962
Number of successful extensions: 1139
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of query: 664
length of database: 4,897,600
effective HSP length: 96
effective length of query: 568
effective length of database: 2,165,440
effective search space: 1229969920
effective search space used: 1229969920
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0559.15