TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0550.1
         (1631 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15785 similar to UP|Q94BV7 (Q94BV7) AT4g05020/T32N4_4, partial...   135  4e-32
AV412167                                                               35  0.095
TC11053 weakly similar to UP|Q9FHK7 (Q9FHK7) Receptor-like prote...    33  0.28
TC14020 similar to UP|Q9LTU6 (Q9LTU6) Gb|AAF50915.1, partial (48%)     28  8.9
TC9648 weakly similar to UP|Q9ZPD6 (Q9ZPD6) BnMAP4K alpha2, part...    28  8.9

>TC15785 similar to UP|Q94BV7 (Q94BV7) AT4g05020/T32N4_4, partial (43%)
          Length = 854

 Score =  135 bits (341), Expect = 4e-32
 Identities = 73/118 (61%), Positives = 85/118 (71%)
 Frame = +2

Query: 867 GGPTGVEFAASLHDFVNEDLVRLYPGIKDIVKITLLEAGDHILSMFDKRITAFADDKFQR 926
           GGPTGVEFAASLHD VNEDLV+LYP  KD+VKITLLEAGDHILSMFDKRITAFA+DKF+R
Sbjct: 164 GGPTGVEFAASLHDSVNEDLVKLYPKAKDLVKITLLEAGDHILSMFDKRITAFAEDKFRR 343

Query: 927 DGIDVKTGSVVVKSTDPISGLSETSSDHDDIESELDNQGVIDVAISERLFVTGVLDEL 984
           DGIDVKTGS+VVK +D      E  +   +I S      V    I  R F+   + ++
Sbjct: 344 DGIDVKTGSMVVKVSDKEISTKEMKNG-GEITSIPYGMAVWSTGIGTRPFIRDFMQQI 514


>AV412167 
          Length = 366

 Score = 35.0 bits (79), Expect = 0.095
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = +2

Query: 923 KFQRDGIDVKTGSVVVKSTD 942
           +FQRDGIDVKTGS+VVK ++
Sbjct: 2   RFQRDGIDVKTGSMVVKVSE 61


>TC11053 weakly similar to UP|Q9FHK7 (Q9FHK7) Receptor-like protein kinase,
            partial (9%)
          Length = 606

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 17/66 (25%), Positives = 34/66 (50%), Gaps = 6/66 (9%)
 Frame = +1

Query: 1168 IYDQNSTRYNNIDKQVIVTLATLTFFC------RRPTILAIMEFINSINIENGNLATSSD 1221
            ++DQ   RY NI+++ +V++  +   C      +RPT+  +++ +  I +E   L    D
Sbjct: 37   VFDQELLRYQNIEEE-LVSMLQVGLACVVPLPEKRPTMAEVVKMVEDIRVEPSPLGEDYD 213

Query: 1222 SSSTSM 1227
             S  S+
Sbjct: 214  ESRNSL 231


>TC14020 similar to UP|Q9LTU6 (Q9LTU6) Gb|AAF50915.1, partial (48%)
          Length = 546

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 26/106 (24%), Positives = 46/106 (42%)
 Frame = +2

Query: 1236 LDVLHVTTVEEHAVKGLLGKGKSRVMFSLTLKMAQAQILLMKENETKLACLSQESLLAEI 1295
            LD L++ + E   VK L G   SR +  L+ K  + +  +   ++T++            
Sbjct: 29   LDELYIESFEIKDVKTLRGDHLSRAIGRLSGKGGKTKFAIENASKTRIV----------- 175

Query: 1296 KVFPSSFSIKAALGNLKISDDSLSSSHFYYWACDMRNPGGRSFVEL 1341
             +  S   I  +  N+KI+ DSL S         M +P G+ + +L
Sbjct: 176  -IADSKIHILGSFANIKIARDSLCS-------LIMGSPAGKVYSKL 289


>TC9648 weakly similar to UP|Q9ZPD6 (Q9ZPD6) BnMAP4K alpha2, partial (10%)
          Length = 686

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 21/77 (27%), Positives = 39/77 (50%)
 Frame = -1

Query: 1521 IIIKMEELKAAMSNKEYQIITECAVSNFSEVPDIPSPLNQYSSKTLNGATDDIVPEVTSG 1580
            +I   ++L   +S    ++IT CA+     +    +  N+  SK  NGA DDI+   +S 
Sbjct: 230  LISTSQDLGEVLSMFTSELITVCAIDPSGSLA--MASFNEGISKIDNGAEDDIILSFSSS 57

Query: 1581 ADSVTTDVEASVLLKIW 1597
            + S+  D+E S+   ++
Sbjct: 56   SLSL-CDLETSLCASMY 9


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,100,385
Number of Sequences: 28460
Number of extensions: 323990
Number of successful extensions: 1615
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1613
length of query: 1631
length of database: 4,897,600
effective HSP length: 103
effective length of query: 1528
effective length of database: 1,966,220
effective search space: 3004384160
effective search space used: 3004384160
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)